YJHQ - ECOLI - GREMLIN Contacts

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YJHQ - Uncharacterized N-acetyltransferase YjhQ

UniProt:	P39368	Sequences: MTVHHFTFHITDKSDASDIREVETRAFGFSKEADLVASLLEDESARPALSLLARYEGKAVGHILFTRATFKGEMDSPLMHILAPLAVIPEYQGMGVGGRLIRTGIEHLRLMGCQTVFVLGHATYYPRHGFEPCAGDKGYPAPYPIPEEHKACWMMQSLTAQPMTLTGHIRCADPDETGALT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12559
Length:	181 (163)
Sequences:	2180 (1588)
Seq/√Len:	124.4

ECOLI - YJHQ YHBS

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
65_F	104_G	5.392	1.00
105_I	116_V	3.519	1.00
85_L	101_I	3.422	1.00
105_I	130_F	3.058	1.00
20_R	37_A	3.036	1.00
23_E	86_A	2.932	1.00
121_H	126_P	2.694	1.00
79_M	115_T	2.656	1.00
9_H	54_R	2.534	1.00
62_H	86_A	2.170	1.00
103_T	107_H	2.140	1.00
22_V	59_A	2.070	1.00
107_H	110_L	2.054	1.00
70_F	167_G	2.032	1.00
89_P	92_Q	1.991	1.00
25_R	88_I	1.984	1.00
98_G	127_R	1.905	1.00
11_T	50_S	1.873	1.00
91_Y	94_M	1.834	1.00
20_R	24_T	1.832	1.00
114_Q	159_T	1.828	1.00
55_Y	91_Y	1.826	1.00
51_L	103_T	1.821	1.00
54_R	57_G	1.736	1.00
103_T	106_E	1.735	1.00
9_H	15_D	1.723	1.00
98_G	102_R	1.722	1.00
52_L	59_A	1.668	1.00
11_T	40_L	1.655	1.00
80_H	113_C	1.639	1.00
63_I	104_G	1.572	1.00
157_S	161_Q	1.561	1.00
82_L	101_I	1.557	1.00
60_V	96_V	1.522	1.00
51_L	104_G	1.452	1.00
23_E	62_H	1.445	1.00
157_S	163_M	1.440	1.00
98_G	128_H	1.425	1.00
87_V	96_V	1.413	1.00
122_A	149_H	1.374	1.00
80_H	108_L	1.367	1.00
119_L	171_C	1.336	1.00
117_F	139_Y	1.334	1.00
126_P	154_M	1.314	1.00
10_I	107_H	1.292	1.00
88_I	91_Y	1.248	1.00
58_K	88_I	1.247	1.00
131_E	136_D	1.241	0.99
82_L	118_V	1.240	0.99
135_G	147_E	1.231	0.99
46_R	172_A	1.219	0.99
53_A	96_V	1.218	0.99
81_I	171_C	1.212	0.99
105_I	156_Q	1.209	0.99
24_T	33_A	1.205	0.99
7_T	54_R	1.187	0.99
109_R	156_Q	1.168	0.99
63_I	100_L	1.143	0.99
82_L	116_V	1.128	0.99
8_F	51_L	1.127	0.99
6_F	55_Y	1.126	0.99
21_E	24_T	1.122	0.99
133_C	155_M	1.103	0.99
68_A	169_I	1.098	0.99
107_H	111_M	1.083	0.99
6_F	99_R	1.075	0.99
23_E	36_V	1.073	0.99
133_C	138_G	1.069	0.98
55_Y	60_V	1.065	0.98
51_L	107_H	1.062	0.98
157_S	160_A	1.055	0.98
101_I	128_H	1.052	0.98
39_L	66_T	1.052	0.98
140_P	168_H	1.051	0.98
141_A	145_I	1.045	0.98
119_L	153_W	1.042	0.98
42_D	172_A	1.037	0.98
81_I	175_D	1.037	0.98
61_G	100_L	1.037	0.98
70_F	79_M	1.010	0.98
30_S	33_A	0.988	0.97
97_G	124_Y	0.988	0.97
17_S	21_E	0.965	0.97
20_R	34_D	0.961	0.97
171_C	175_D	0.956	0.97
84_P	125_Y	0.949	0.97
70_F	165_L	0.943	0.97
121_H	149_H	0.937	0.97
42_D	174_P	0.937	0.97
68_A	79_M	0.936	0.96
35_L	83_A	0.933	0.96
15_D	54_R	0.931	0.96
106_E	109_R	0.928	0.96
35_L	141_A	0.926	0.96
60_V	91_Y	0.923	0.96
121_H	154_M	0.922	0.96
81_I	153_W	0.912	0.96
118_V	154_M	0.903	0.96
157_S	162_P	0.903	0.96
20_R	33_A	0.902	0.96
63_I	85_L	0.900	0.96
67_R	78_L	0.893	0.95
99_R	102_R	0.892	0.95
102_R	106_E	0.876	0.95
46_R	111_M	0.873	0.95
153_W	171_C	0.872	0.95
65_F	82_L	0.871	0.95
29_F	33_A	0.860	0.94
24_T	28_G	0.854	0.94
55_Y	58_K	0.849	0.94
128_H	156_Q	0.829	0.93
131_E	157_S	0.822	0.93
22_V	88_I	0.812	0.93
24_T	31_K	0.809	0.92
81_I	117_F	0.809	0.92
71_K	168_H	0.808	0.92
58_K	90_E	0.806	0.92
58_K	91_Y	0.796	0.92
9_H	52_L	0.792	0.92
106_E	110_L	0.792	0.92
66_T	149_H	0.790	0.91
53_A	87_V	0.789	0.91
147_E	154_M	0.784	0.91
26_A	89_P	0.782	0.91
68_A	81_I	0.781	0.91
93_G	124_Y	0.776	0.91
19_I	45_A	0.776	0.91
25_R	90_E	0.775	0.91
51_L	100_L	0.774	0.91
124_Y	128_H	0.774	0.91
18_D	58_K	0.773	0.91
79_M	117_F	0.773	0.91
87_V	124_Y	0.766	0.90
73_E	166_T	0.765	0.90
64_L	83_A	0.760	0.90
27_F	84_P	0.759	0.90
47_P	64_L	0.758	0.90
65_F	108_L	0.754	0.89
61_G	87_V	0.751	0.89
25_R	89_P	0.750	0.89
34_D	38_S	0.749	0.89
67_R	113_C	0.745	0.89
49_L	111_M	0.742	0.89
46_R	113_C	0.729	0.88
108_L	139_Y	0.729	0.88
137_K	155_M	0.727	0.88
46_R	108_L	0.722	0.87
51_L	61_G	0.718	0.87
10_I	51_L	0.718	0.87
80_H	116_V	0.717	0.87
131_E	137_K	0.716	0.87
83_A	143_Y	0.715	0.87
114_Q	162_P	0.715	0.87
72_G	123_T	0.710	0.86
45_A	64_L	0.702	0.86
126_P	132_P	0.699	0.86
153_W	169_I	0.698	0.86
85_L	100_L	0.694	0.85
92_Q	125_Y	0.692	0.85
46_R	49_L	0.688	0.85
32_E	175_D	0.687	0.85
124_Y	127_R	0.687	0.85
102_R	156_Q	0.682	0.84
102_R	109_R	0.681	0.84
108_L	116_V	0.677	0.84
71_K	170_R	0.675	0.84
118_V	153_W	0.674	0.83
45_A	50_S	0.673	0.83
49_L	108_L	0.663	0.82
65_F	118_V	0.661	0.82
48_A	67_R	0.660	0.82
23_E	50_S	0.658	0.82
53_A	61_G	0.657	0.82
30_S	34_D	0.654	0.82
109_R	159_T	0.653	0.82
122_A	126_P	0.651	0.81
63_I	101_I	0.648	0.81
21_E	25_R	0.647	0.81
153_W	175_D	0.644	0.81
119_L	145_I	0.644	0.81
115_T	163_M	0.643	0.81
16_A	40_L	0.639	0.80
164_T	169_I	0.638	0.80
46_R	80_H	0.634	0.80
50_S	62_H	0.631	0.79
69_T	170_R	0.631	0.79
32_E	35_L	0.629	0.79
141_A	153_W	0.621	0.78
83_A	118_V	0.616	0.78
81_I	125_Y	0.614	0.77
160_A	163_M	0.611	0.77
70_F	115_T	0.611	0.77
119_L	141_A	0.607	0.77
55_Y	94_M	0.606	0.76
72_G	77_P	0.604	0.76
102_R	128_H	0.601	0.76
119_L	169_I	0.599	0.76
142_P	168_H	0.597	0.75
22_V	26_A	0.592	0.75
28_G	33_A	0.590	0.75
35_L	175_D	0.590	0.75
27_F	35_L	0.587	0.74
65_F	116_V	0.583	0.74
85_L	97_G	0.580	0.73
109_R	158_L	0.580	0.73
120_G	125_Y	0.577	0.73
32_E	119_L	0.575	0.73
27_F	92_Q	0.573	0.72
121_H	124_Y	0.573	0.72
139_Y	169_I	0.571	0.72
121_H	125_Y	0.570	0.72
24_T	30_S	0.567	0.72
43_E	47_P	0.563	0.71
12_D	15_D	0.562	0.71
39_L	174_P	0.560	0.71
23_E	85_L	0.558	0.70
47_P	79_M	0.553	0.70
116_V	130_F	0.548	0.69
119_L	154_M	0.548	0.69
136_D	140_P	0.546	0.69
146_P	149_H	0.542	0.68
12_D	110_L	0.542	0.68
159_T	162_P	0.540	0.68
83_A	146_P	0.539	0.68
95_G	99_R	0.537	0.68
16_A	45_A	0.535	0.67
145_I	153_W	0.533	0.67
25_R	28_G	0.532	0.67
9_H	59_A	0.531	0.67
54_R	59_A	0.529	0.66
18_D	59_A	0.527	0.66
18_D	21_E	0.527	0.66
118_V	156_Q	0.522	0.65
31_K	63_I	0.518	0.65
28_G	34_D	0.516	0.65
40_L	108_L	0.515	0.64
17_S	20_R	0.514	0.64
61_G	131_E	0.513	0.64
32_E	36_V	0.512	0.64
8_F	100_L	0.510	0.64
16_A	19_I	0.509	0.63
157_S	164_T	0.506	0.63
83_A	119_L	0.503	0.63
14_S	166_T	0.500	0.62

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4zbgA	1	0.8232	99.9	0.568	Contact Map
4rs2A	1	0.9558	99.9	0.608	Contact Map
3r1kA	4	0.9558	99.7	0.672	Contact Map
2hv2A	4	0.9669	99.7	0.674	Contact Map
3sxnA	4	0.9724	99.7	0.675	Contact Map
2i00A	4	0.9613	99.7	0.677	Contact Map
1kuxA	1	0.8398	99.7	0.679	Contact Map
1cjwA	1	0.8398	99.7	0.68	Contact Map
3te4A	1	0.8232	99.7	0.681	Contact Map
2reeA	1	0.8287	99.7	0.681	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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