YJHP - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YJHP - Uncharacterized protein YjhP

UniProt:	P39367	Sequences: MDIPRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRRWLEANPDDDFAAEVRAELNIAPKRYVTYARECFGWGVFALIAR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12558
Length:	248 (209)
Sequences:	17044 (12983)
Seq/√Len:	898.0

ECOLI - YJHP TAM BIOC SMTA UBIE UBIG CMOA TEHB YAFE CMOB CFA RLMA
BACSU - YCGJ YXBB MENG YODH YRRT YBAJ YDAC YRHH YQEM YXJB
HALSA - Q9HRX3 Q9HR63 Q9HR81 Q9HND6 Q9HMT2 ARSM Q9HQ85 Q9HSK6
SULSO - Q7LXN7 Q97WH3 Q97X57 Q97WT7 Q97ZU8 Q97YX4 Q97XD7 Q97WN4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
39_R	61_T	3.429	1.00
127_A	179_Y	2.746	1.00
72_T	90_F	2.596	1.00
69_S	92_H	2.547	1.00
75_A	90_F	2.543	1.00
63_T	104_C	2.526	1.00
45_S	64_G	2.513	1.00
72_T	76_K	2.513	1.00
61_T	89_H	2.497	1.00
125_L	128_Q	2.457	1.00
51_L	62_G	2.430	1.00
56_R	82_L	2.369	1.00
126_L	136_M	2.335	1.00
63_T	91_I	2.316	1.00
41_L	104_C	2.311	1.00
65_I	93_N	2.220	1.00
69_S	73_A	2.216	1.00
105_D	131_K	2.206	1.00
52_C	79_A	2.088	1.00
130_L	134_G	2.066	1.00
38_T	106_V	2.053	1.00
107_A	130_L	2.049	1.00
107_A	126_L	2.037	1.00
72_T	92_H	2.035	1.00
44_G	112_A	2.014	1.00
74_Q	77_R	1.969	1.00
125_L	129_S	1.906	1.00
35_K	38_T	1.904	1.00
109_C	112_A	1.793	1.00
52_C	78_R	1.765	1.00
120_A	176_D	1.757	1.00
118_G	121_G	1.752	1.00
26_A	53_T	1.744	1.00
66_D	72_T	1.738	1.00
39_R	63_T	1.715	1.00
130_L	136_M	1.714	1.00
120_A	124_E	1.698	1.00
40_I	54_W	1.690	1.00
63_T	89_H	1.574	1.00
39_R	131_K	1.555	1.00
43_L	95_A	1.539	1.00
77_R	81_E	1.525	1.00
43_L	126_L	1.518	1.00
195_Y	198_A	1.512	1.00
95_A	116_A	1.504	1.00
64_G	90_F	1.488	1.00
206_W	209_A	1.481	1.00
79_A	90_F	1.473	1.00
93_N	99_V	1.465	1.00
45_S	51_L	1.455	1.00
34_M	38_T	1.424	1.00
112_A	116_A	1.419	1.00
194_R	198_A	1.395	1.00
100_A	103_K	1.383	1.00
80_E	85_S	1.382	1.00
51_L	64_G	1.379	1.00
40_I	106_V	1.351	1.00
73_A	76_K	1.341	1.00
121_G	124_E	1.332	1.00
79_A	88_V	1.331	1.00
120_A	173_A	1.316	1.00
78_R	81_E	1.314	1.00
166_T	169_G	1.307	1.00
155_A	159_S	1.305	1.00
45_S	75_A	1.304	1.00
39_R	104_C	1.289	1.00
50_M	108_A	1.277	1.00
27_T	30_R	1.269	1.00
94_D	97_G	1.268	1.00
195_Y	200_W	1.266	1.00
98_Y	129_S	1.256	1.00
70_L	73_A	1.253	1.00
116_A	122_A	1.252	1.00
130_L	179_Y	1.246	1.00
44_G	109_C	1.234	1.00
156_C	159_S	1.231	1.00
41_L	107_A	1.223	1.00
122_A	126_L	1.202	1.00
26_A	30_R	1.200	1.00
101_N	128_Q	1.194	1.00
73_A	77_R	1.177	1.00
16_I	19_P	1.177	1.00
53_T	57_D	1.157	1.00
31_V	185_V	1.154	1.00
77_R	80_E	1.144	1.00
119_F	173_A	1.142	1.00
172_G	176_D	1.137	1.00
53_T	56_R	1.133	1.00
65_I	98_Y	1.127	1.00
98_Y	125_L	1.117	1.00
95_A	112_A	1.115	1.00
212_D	215_F	1.111	1.00
52_C	82_L	1.109	1.00
171_V	175_D	1.102	1.00
200_W	204_R	1.100	1.00
55_A	87_R	1.097	1.00
107_A	129_S	1.071	1.00
42_D	62_G	1.060	1.00
78_R	82_L	1.051	1.00
123_E	174_F	1.049	1.00
39_R	105_D	1.047	1.00
27_T	31_V	1.044	1.00
67_M	94_D	1.042	1.00
66_D	71_F	1.041	1.00
216_A	220_R	1.021	1.00
217_A	220_R	1.016	1.00
31_V	183_E	1.015	1.00
42_D	64_G	1.004	1.00
64_G	75_A	1.004	1.00
198_A	201_L	1.000	1.00
74_Q	78_R	0.999	1.00
126_L	130_L	0.994	1.00
196_E	202_T	0.993	1.00
217_A	221_A	0.983	1.00
113_T	140_E	0.980	1.00
38_T	60_I	0.975	1.00
50_M	110_V	0.963	1.00
153_A	157_G	0.956	1.00
39_R	103_K	0.952	1.00
167_L	171_V	0.947	1.00
36_P	59_G	0.944	1.00
150_E	153_A	0.938	1.00
101_N	125_L	0.937	1.00
202_T	206_W	0.937	1.00
172_G	175_D	0.933	1.00
198_A	202_T	0.931	1.00
196_E	200_W	0.931	1.00
213_D	216_A	0.929	1.00
121_G	125_L	0.929	1.00
15_R	47_S	0.919	1.00
28_L	137_L	0.917	1.00
124_E	177_L	0.914	1.00
21_T	24_K	0.910	1.00
215_F	218_E	0.908	1.00
47_S	71_F	0.901	1.00
38_T	105_D	0.901	1.00
171_V	184_M	0.898	1.00
40_I	108_A	0.894	1.00
54_W	108_A	0.893	1.00
111_G	114_W	0.887	1.00
96_A	116_A	0.886	1.00
193_D	197_A	0.884	1.00
195_Y	199_K	0.880	1.00
41_L	129_S	0.880	1.00
99_V	125_L	0.878	1.00
93_N	98_Y	0.877	1.00
103_K	131_K	0.872	1.00
65_I	91_I	0.871	1.00
51_L	90_F	0.863	1.00
150_E	154_Q	0.860	1.00
127_A	177_L	0.857	1.00
76_K	80_E	0.850	1.00
113_T	116_A	0.842	1.00
203_M	207_L	0.832	1.00
26_A	57_D	0.828	1.00
218_E	222_E	0.824	1.00
215_F	219_V	0.817	1.00
50_M	54_W	0.807	1.00
32_L	137_L	0.807	1.00
45_S	66_D	0.802	1.00
68_S	71_F	0.799	1.00
27_T	185_V	0.798	1.00
48_G	75_A	0.798	1.00
33_R	135_I	0.797	1.00
146_L	149_T	0.796	1.00
169_G	172_G	0.795	1.00
52_C	56_R	0.790	1.00
207_L	211_P	0.789	1.00
219_V	223_L	0.786	1.00
22_E	26_A	0.783	1.00
49_E	53_T	0.781	1.00
168_P	172_G	0.779	1.00
51_L	88_V	0.778	1.00
14_H	17_H	0.776	1.00
220_R	223_L	0.770	1.00
124_E	128_Q	0.766	1.00
153_A	156_C	0.763	1.00
79_A	84_V	0.762	1.00
212_D	216_A	0.761	1.00
34_M	37_G	0.760	1.00
55_A	88_V	0.756	1.00
120_A	177_L	0.756	1.00
154_Q	157_G	0.754	1.00
111_G	139_G	0.754	1.00
28_L	110_V	0.754	1.00
211_P	215_F	0.753	1.00
23_E	26_A	0.752	1.00
151_E	154_Q	0.747	1.00
25_Y	50_M	0.745	1.00
113_T	123_E	0.725	1.00
106_V	135_I	0.723	1.00
48_G	90_F	0.722	1.00
110_V	139_G	0.722	1.00
163_D	169_G	0.722	1.00
34_M	60_I	0.717	1.00
114_W	140_E	0.704	1.00
194_R	197_A	0.701	1.00
127_A	178_G	0.697	1.00
199_K	202_T	0.696	1.00
37_G	60_I	0.688	1.00
197_A	200_W	0.685	1.00
103_K	129_S	0.684	1.00
109_C	138_I	0.682	1.00
214_D	218_E	0.682	1.00
42_D	108_A	0.679	1.00
219_V	222_E	0.679	1.00
76_K	89_H	0.677	1.00
174_F	177_L	0.674	1.00
27_T	187_A	0.671	1.00
193_D	202_T	0.668	1.00
198_A	203_M	0.660	1.00
168_P	171_V	0.657	1.00
66_D	92_H	0.654	1.00
45_S	65_I	0.651	1.00
111_G	115_I	0.651	1.00
216_A	223_L	0.650	1.00
111_G	141_P	0.648	1.00
30_R	57_D	0.647	1.00
80_E	87_R	0.643	1.00
29_G	54_W	0.641	1.00
70_L	74_Q	0.640	1.00
96_A	121_G	0.640	1.00
195_Y	203_M	0.640	1.00
19_P	22_E	0.639	1.00
201_L	205_R	0.638	1.00
42_D	65_I	0.636	1.00
100_A	129_S	0.634	1.00
95_A	122_A	0.633	1.00
45_S	90_F	0.633	1.00
64_G	88_V	0.632	1.00
181_V	184_M	0.631	1.00
196_E	201_L	0.631	1.00
17_H	20_F	0.629	1.00
80_E	83_G	0.628	1.00
204_R	207_L	0.627	1.00
96_A	117_G	0.627	1.00
84_V	87_R	0.626	1.00
93_N	97_G	0.622	1.00
202_T	205_R	0.622	1.00
69_S	76_K	0.621	1.00
197_A	201_L	0.619	1.00
29_G	53_T	0.619	1.00
155_A	158_V	0.618	1.00
67_M	92_H	0.618	1.00
61_T	87_R	0.615	1.00
113_T	138_I	0.615	1.00
204_R	208_E	0.606	1.00
193_D	200_W	0.603	1.00
201_L	204_R	0.601	1.00
23_E	27_T	0.600	1.00
128_Q	131_K	0.598	1.00
123_E	170_L	0.594	1.00
113_T	119_F	0.593	1.00
215_F	222_E	0.593	1.00
152_I	156_C	0.592	1.00
19_P	23_E	0.591	1.00
101_N	129_S	0.590	1.00
109_C	126_L	0.589	1.00
195_Y	201_L	0.584	1.00
170_L	174_F	0.584	1.00
97_G	121_G	0.578	1.00
113_T	122_A	0.575	1.00
196_E	199_K	0.574	1.00
213_D	217_A	0.569	1.00
169_G	173_A	0.568	1.00
193_D	196_E	0.568	1.00
216_A	219_V	0.565	1.00
97_G	125_L	0.563	1.00
208_E	211_P	0.562	1.00
40_I	62_G	0.560	1.00
104_C	129_S	0.558	1.00
123_E	177_L	0.557	1.00
167_L	186_L	0.555	1.00
207_L	210_N	0.555	1.00
136_M	179_Y	0.554	1.00
54_W	106_V	0.549	1.00
15_R	78_R	0.546	1.00
18_N	22_E	0.545	1.00
159_S	222_E	0.545	1.00
76_K	90_F	0.545	1.00
99_V	129_S	0.543	1.00
173_A	176_D	0.543	1.00
182_V	186_L	0.542	1.00
52_C	88_V	0.535	1.00
38_T	135_I	0.535	1.00
106_V	137_L	0.535	1.00
99_V	128_Q	0.533	1.00
189_Q	192_W	0.532	1.00
140_E	170_L	0.532	1.00
96_A	118_G	0.530	1.00
123_E	173_A	0.529	1.00
96_A	122_A	0.528	1.00
43_L	107_A	0.527	1.00
25_Y	53_T	0.525	1.00
37_G	59_G	0.523	1.00
194_R	202_T	0.523	1.00
14_H	20_F	0.520	1.00
161_T	165_L	0.520	1.00
162_S	165_L	0.518	1.00
158_V	222_E	0.516	1.00
106_V	134_G	0.515	1.00
205_R	208_E	0.514	1.00
165_L	169_G	0.512	1.00
44_G	116_A	0.512	1.00
39_R	102_E	0.512	1.00
15_R	19_P	0.512	1.00
95_A	98_Y	0.508	1.00
115_I	140_E	0.506	1.00
43_L	65_I	0.505	1.00
21_T	25_Y	0.504	1.00
38_T	131_K	0.503	1.00
153_A	159_S	0.502	1.00
40_I	60_I	0.501	1.00
115_I	141_P	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
5bp7A	3	1	100	0.34	Contact Map
2o57A	2	0.9798	100	0.359	Contact Map
4pneA	2	0.9556	100	0.369	Contact Map
2p35A	2	0.9194	100	0.372	Contact Map
3ccfA	1	0.9073	100	0.381	Contact Map
2yqzA	1	0.9677	100	0.384	Contact Map
3busA	1	0.9153	100	0.385	Contact Map
4kriA	1	0.9677	100	0.407	Contact Map
4ineA	2	0.9758	100	0.407	Contact Map
2fk8A	1	0.9476	100	0.408	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0086 seconds.