YJHF - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YJHF - Uncharacterized permease YjhF

UniProt:	P39357	Sequences: MPLIIVVAGIALLLLLTIKIKLNTFVSLIIVSIAVAIASGMDLSKVVTSVESGLGGTLGHIGLIFGFGVMLGRLLADAGGAQRIALTMLNYFGKNKLDWAVVCSAFIVGIALFFEVGLILLVPILFAIAREAKISPMFMCVPMLSGLLVAHGFLPPHPGPTVIAREYGADVGLVLIYGIIVGIPTFILCGPVLNKFCQRIIPDAFKKEGNIASLGATRRFSESEMPGFGISFLTAMLPVILMAVVTIIQMTHAKSAADSGLFYNVILFLGNSTIAMLISLLFAIYTMGLGRGKTIPDLMDSCGKAIAGIAGLLLIIGGGGAFKQVLIDSGVGQYISTLVSGMDINPILMAWGVAAFLRICLGSATVAAISTAGLVIPLLAVHPNTNLALITLATGAGSCICSHVNDASFWMIKDFFGLTTKETLLSWTLMSTLLSISGLIFILLASLVL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12548
Length:	449 (421)
Sequences:	5467 (3634)
Seq/√Len:	177.1

ECOLI - YJHF GNTP YGBN GNTU IDNT GNTT DSDX
BACSU - GNTP YOJA YXJC
HALSA - Q9HNF6 Q9HNR2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
304_K	307_A	3.495	1.00
294_T	297_D	3.373	1.00
237_L	282_F	3.236	1.00
12_L	34_A	3.217	1.00
9_G	322_F	3.207	1.00
324_Q	328_D	3.119	1.00
272_S	276_M	3.076	1.00
196_F	200_I	3.039	1.00
9_G	35_V	2.979	1.00
180_I	184_P	2.967	1.00
333_Q	337_T	2.908	1.00
77_D	301_S	2.904	1.00
87_T	228_F	2.851	1.00
228_F	232_F	2.819	1.00
419_T	422_E	2.811	1.00
87_T	91_Y	2.790	1.00
272_S	275_A	2.764	1.00
11_A	15_L	2.586	1.00
183_I	187_I	2.559	1.00
49_S	328_D	2.551	1.00
234_T	238_P	2.544	1.00
351_W	435_S	2.504	1.00
343_D	346_P	2.406	1.00
177_Y	180_I	2.373	1.00
227_G	230_I	2.358	1.00
182_G	185_T	2.349	1.00
42_D	45_K	2.326	1.00
48_T	52_S	2.321	1.00
337_T	340_S	2.284	1.00
15_L	19_K	2.257	1.00
440_I	444_L	2.255	1.00
436_I	440_I	2.244	1.00
432_T	436_I	2.237	1.00
87_T	90_N	2.236	1.00
342_M	348_L	2.230	1.00
345_N	348_L	2.184	1.00
201_I	205_F	2.175	1.00
229_G	233_L	2.157	1.00
82_Q	86_L	2.051	1.00
200_I	204_A	2.023	1.00
52_S	56_G	1.997	1.00
193_L	197_C	1.991	1.00
354_A	371_T	1.973	1.00
167_Y	394_T	1.968	1.00
77_D	297_D	1.940	1.00
343_D	348_L	1.890	1.00
42_D	46_V	1.866	1.00
176_I	179_I	1.852	1.00
334_Y	338_L	1.821	1.00
12_L	31_V	1.809	1.00
355_A	400_I	1.787	1.00
197_C	200_I	1.766	1.00
182_G	186_F	1.756	1.00
359_I	401_C	1.753	1.00
350_A	394_T	1.745	1.00
193_L	196_F	1.735	1.00
231_S	234_T	1.733	1.00
379_L	390_I	1.703	1.00
178_G	181_V	1.703	1.00
163_I	368_A	1.698	1.00
114_F	117_G	1.688	1.00
197_C	201_I	1.673	1.00
342_M	345_N	1.670	1.00
152_G	399_C	1.658	1.00
5_I	38_A	1.656	1.00
281_L	285_Y	1.654	1.00
425_L	429_L	1.654	1.00
73_R	77_D	1.650	1.00
197_C	204_A	1.634	1.00
45_K	48_T	1.611	1.00
204_A	207_K	1.601	1.00
174_V	177_Y	1.591	1.00
246_T	250_M	1.577	1.00
22_L	27_S	1.557	1.00
238_P	242_M	1.553	1.00
175_L	179_I	1.551	1.00
245_V	249_Q	1.547	1.00
105_A	108_V	1.527	1.00
140_C	416_F	1.519	1.00
177_Y	181_V	1.508	1.00
241_L	278_I	1.507	1.00
297_D	300_D	1.506	1.00
201_I	204_A	1.499	1.00
96_K	108_V	1.490	1.00
83_R	87_T	1.487	1.00
54_L	62_G	1.486	1.00
113_F	116_V	1.481	1.00
94_K	131_E	1.479	1.00
198_Q	201_I	1.471	1.00
13_L	31_V	1.470	1.00
192_V	196_F	1.469	1.00
275_A	280_L	1.463	1.00
180_I	183_I	1.447	1.00
400_I	435_S	1.447	1.00
429_L	433_L	1.444	1.00
443_L	446_S	1.430	1.00
69_V	302_C	1.412	1.00
172_G	175_L	1.408	1.00
99_W	191_P	1.406	1.00
233_L	237_L	1.402	1.00
176_I	180_I	1.400	1.00
181_V	184_P	1.397	1.00
228_F	231_S	1.394	1.00
193_L	201_I	1.388	1.00
192_V	195_K	1.379	1.00
204_A	208_E	1.373	1.00
174_V	391_T	1.362	1.00
175_L	178_G	1.350	1.00
49_S	324_Q	1.344	1.00
179_I	183_I	1.344	1.00
229_G	232_F	1.330	1.00
276_M	279_S	1.323	1.00
246_T	249_Q	1.321	1.00
323_K	327_I	1.315	1.00
161_T	164_A	1.315	1.00
181_V	185_T	1.314	1.00
200_I	203_D	1.311	1.00
380_A	387_L	1.309	1.00
190_G	193_L	1.307	1.00
247_I	250_M	1.304	1.00
316_I	407_A	1.297	1.00
72_G	301_S	1.295	1.00
199_R	203_D	1.293	1.00
202_P	205_F	1.285	1.00
300_D	304_K	1.285	1.00
166_E	372_A	1.278	1.00
180_I	187_I	1.275	1.00
109_G	113_F	1.271	1.00
115_E	407_A	1.270	1.00
183_I	186_F	1.270	1.00
81_A	85_A	1.261	1.00
113_F	117_G	1.255	1.00
230_I	233_L	1.255	1.00
170_D	173_L	1.253	1.00
296_P	300_D	1.240	1.00
205_F	208_E	1.238	1.00
384_N	387_L	1.237	1.00
194_N	198_Q	1.237	1.00
70_M	302_C	1.236	1.00
396_A	438_G	1.236	1.00
193_L	200_I	1.235	1.00
12_L	16_L	1.229	1.00
181_V	445_A	1.226	1.00
195_K	198_Q	1.219	1.00
282_F	286_T	1.219	1.00
96_K	107_I	1.216	1.00
173_L	176_I	1.213	1.00
78_A	287_M	1.204	1.00
114_F	408_S	1.204	1.00
242_M	246_T	1.200	1.00
430_M	434_L	1.196	1.00
190_G	194_N	1.195	1.00
133_K	204_A	1.192	1.00
198_Q	202_P	1.187	1.00
421_K	425_L	1.182	1.00
386_N	389_L	1.179	1.00
396_A	442_I	1.176	1.00
382_H	385_T	1.170	1.00
101_V	105_A	1.166	1.00
184_P	187_I	1.161	1.00
226_P	231_S	1.160	1.00
74_L	283_A	1.160	1.00
86_L	131_E	1.153	1.00
82_Q	223_S	1.148	1.00
180_I	185_T	1.148	1.00
234_T	242_M	1.148	1.00
101_V	104_S	1.148	1.00
53_G	324_Q	1.141	1.00
400_I	432_T	1.140	1.00
250_M	253_A	1.137	1.00
171_V	175_L	1.133	1.00
273_T	277_L	1.129	1.00
201_I	208_E	1.128	1.00
34_A	38_A	1.127	1.00
6_V	10_I	1.126	1.00
363_S	366_V	1.123	1.00
39_S	42_D	1.120	1.00
441_F	445_A	1.115	1.00
25_F	314_L	1.111	1.00
115_E	316_I	1.110	1.00
178_G	184_P	1.099	1.00
104_S	108_V	1.096	1.00
276_M	280_L	1.088	1.00
245_V	250_M	1.074	1.00
342_M	346_P	1.069	1.00
214_L	217_T	1.067	1.00
275_A	283_A	1.061	1.00
229_G	234_T	1.061	1.00
172_G	176_I	1.060	1.00
359_I	400_I	1.057	1.00
230_I	234_T	1.056	1.00
402_S	406_D	1.054	1.00
80_G	231_S	1.052	1.00
174_V	179_I	1.050	1.00
145_S	190_G	1.049	1.00
194_N	197_C	1.049	1.00
351_W	439_L	1.049	1.00
239_V	243_A	1.048	1.00
191_P	194_N	1.045	1.00
344_I	348_L	1.044	1.00
279_S	283_A	1.044	1.00
77_D	304_K	1.043	1.00
86_L	90_N	1.036	0.99
420_T	424_L	1.033	0.99
57_T	320_G	1.032	0.99
191_P	195_K	1.031	0.99
118_L	415_F	1.030	0.99
248_I	252_H	1.029	0.99
40_G	45_K	1.027	0.99
197_C	203_D	1.026	0.99
177_Y	183_I	1.024	0.99
110_I	113_F	1.024	0.99
231_S	238_P	1.014	0.99
235_A	242_M	1.013	0.99
249_Q	252_H	1.013	0.99
238_P	241_L	1.007	0.99
171_V	174_V	1.006	0.99
422_E	425_L	1.001	0.99
237_L	279_S	0.989	0.99
175_L	180_I	0.987	0.99
247_I	251_T	0.985	0.99
330_G	333_Q	0.985	0.99
392_L	442_I	0.983	0.99
130_R	136_P	0.980	0.99
83_R	228_F	0.979	0.99
102_V	186_F	0.979	0.99
171_V	176_I	0.978	0.99
101_V	108_V	0.974	0.99
196_F	204_A	0.972	0.99
413_K	423_T	0.972	0.99
268_F	271_N	0.970	0.99
41_M	49_S	0.967	0.99
244_V	248_I	0.965	0.99
50_V	321_A	0.961	0.99
35_V	322_F	0.960	0.99
84_I	231_S	0.960	0.99
190_G	197_C	0.960	0.99
109_G	117_G	0.959	0.99
324_Q	327_I	0.958	0.99
274_I	278_I	0.956	0.99
27_S	31_V	0.953	0.99
63_L	67_F	0.951	0.99
272_S	277_L	0.946	0.99
177_Y	392_L	0.943	0.99
40_G	43_L	0.943	0.99
189_C	193_L	0.941	0.99
267_L	270_G	0.941	0.99
64_I	316_I	0.940	0.99
364_A	402_S	0.938	0.99
368_A	398_S	0.938	0.99
150_A	157_H	0.936	0.99
214_L	218_R	0.934	0.99
233_L	240_I	0.933	0.99
171_V	178_G	0.932	0.99
9_G	34_A	0.932	0.99
96_K	106_F	0.930	0.99
180_I	186_F	0.929	0.99
266_I	271_N	0.925	0.99
48_T	51_E	0.922	0.99
438_G	442_I	0.921	0.99
237_L	241_L	0.921	0.99
249_Q	253_A	0.921	0.99
309_I	313_L	0.921	0.99
234_T	241_L	0.916	0.99
178_G	182_G	0.915	0.99
402_S	427_W	0.912	0.99
284_I	287_M	0.911	0.99
116_V	119_I	0.907	0.99
181_V	441_F	0.906	0.99
358_R	406_D	0.905	0.99
408_S	412_I	0.902	0.99
172_G	179_I	0.902	0.99
160_P	164_A	0.901	0.99
273_T	276_M	0.899	0.99
233_L	286_T	0.897	0.99
227_G	231_S	0.896	0.99
217_T	221_S	0.891	0.98
173_L	177_Y	0.886	0.98
16_L	22_L	0.886	0.98
220_F	224_E	0.884	0.98
106_F	110_I	0.881	0.98
16_L	27_S	0.877	0.98
96_K	100_A	0.875	0.98
293_K	298_L	0.875	0.98
49_S	53_G	0.873	0.98
104_S	107_I	0.873	0.98
144_L	409_F	0.869	0.98
182_G	187_I	0.863	0.98
358_R	364_A	0.862	0.98
248_I	251_T	0.861	0.98
401_C	428_T	0.856	0.98
31_V	34_A	0.855	0.98
248_I	253_A	0.854	0.98
267_L	271_N	0.852	0.98
109_G	112_L	0.851	0.98
270_G	283_A	0.849	0.98
235_A	238_P	0.848	0.98
109_G	115_E	0.847	0.98
439_L	443_L	0.846	0.98
428_T	432_T	0.846	0.98
110_I	114_F	0.845	0.98
189_C	194_N	0.844	0.98
102_V	105_A	0.843	0.98
194_N	200_I	0.843	0.98
169_A	174_V	0.843	0.98
32_S	36_A	0.842	0.98
111_A	114_F	0.841	0.98
213_S	216_A	0.840	0.98
272_S	283_A	0.839	0.98
249_Q	267_L	0.839	0.98
198_Q	204_A	0.838	0.98
193_L	433_L	0.837	0.98
376_I	380_A	0.837	0.98
172_G	177_Y	0.837	0.98
111_A	116_V	0.834	0.98
200_I	205_F	0.832	0.98
44_S	48_T	0.831	0.98
111_A	117_G	0.831	0.98
367_A	406_D	0.830	0.98
200_I	207_K	0.828	0.98
7_V	11_A	0.828	0.98
190_G	196_F	0.828	0.98
47_V	51_E	0.826	0.98
103_C	107_I	0.824	0.97
96_K	99_W	0.819	0.97
377_P	381_V	0.819	0.97
437_S	441_F	0.813	0.97
348_L	439_L	0.810	0.97
196_F	199_R	0.809	0.97
134_I	138_F	0.805	0.97
203_D	206_K	0.805	0.97
195_K	199_R	0.805	0.97
112_L	115_E	0.804	0.97
389_L	442_I	0.801	0.97
224_E	228_F	0.797	0.97
150_A	154_L	0.797	0.97
226_P	230_I	0.795	0.97
194_N	201_I	0.791	0.97
39_S	329_S	0.790	0.97
228_F	234_T	0.790	0.97
200_I	208_E	0.790	0.97
101_V	107_I	0.788	0.97
243_A	246_T	0.788	0.97
148_L	431_S	0.786	0.97
94_K	132_A	0.784	0.97
389_L	445_A	0.783	0.97
284_I	288_G	0.780	0.96
192_V	200_I	0.778	0.96
431_S	434_L	0.777	0.96
103_C	106_F	0.776	0.96
275_A	286_T	0.774	0.96
171_V	179_I	0.774	0.96
177_Y	388_A	0.773	0.96
281_L	286_T	0.771	0.96
149_V	182_G	0.771	0.96
10_I	13_L	0.768	0.96
192_V	197_C	0.765	0.96
109_G	150_A	0.764	0.96
364_A	407_A	0.764	0.96
187_I	192_V	0.762	0.96
222_E	225_M	0.762	0.96
91_Y	95_N	0.761	0.96
189_C	196_F	0.760	0.96
5_I	31_V	0.759	0.96
162_V	166_E	0.759	0.96
193_L	429_L	0.759	0.96
389_L	446_S	0.757	0.96
364_A	398_S	0.753	0.96
197_C	433_L	0.751	0.96
423_T	427_W	0.748	0.96
174_V	388_A	0.748	0.96
176_I	181_V	0.745	0.95
358_R	367_A	0.740	0.95
426_S	429_L	0.739	0.95
86_L	225_M	0.738	0.95
35_V	325_V	0.737	0.95
275_A	279_S	0.736	0.95
271_N	275_A	0.732	0.95
354_A	398_S	0.731	0.95
350_A	375_V	0.730	0.95
202_P	206_K	0.729	0.95
115_E	119_I	0.729	0.95
266_I	270_G	0.725	0.95
190_G	195_K	0.724	0.95
361_L	370_S	0.721	0.95
173_L	388_A	0.721	0.95
185_T	189_C	0.719	0.94
173_L	179_I	0.719	0.94
237_L	240_I	0.717	0.94
109_G	114_F	0.715	0.94
8_A	12_L	0.715	0.94
141_V	145_S	0.715	0.94
169_A	172_G	0.712	0.94
5_I	39_S	0.710	0.94
162_V	369_I	0.709	0.94
129_A	134_I	0.706	0.94
245_V	252_H	0.706	0.94
16_L	30_I	0.705	0.94
5_I	9_G	0.704	0.94
140_C	418_L	0.704	0.94
125_L	143_M	0.703	0.94
270_G	275_A	0.702	0.94
273_T	283_A	0.701	0.94
427_W	431_S	0.699	0.94
245_V	251_T	0.698	0.94
193_L	198_Q	0.698	0.94
377_P	382_H	0.697	0.94
339_V	353_V	0.697	0.94
199_R	207_K	0.696	0.93
201_I	206_K	0.695	0.93
52_S	55_G	0.694	0.93
112_L	117_G	0.693	0.93
392_L	396_A	0.692	0.93
111_A	115_E	0.690	0.93
227_G	233_L	0.689	0.93
177_Y	184_P	0.688	0.93
442_I	446_S	0.687	0.93
116_V	159_G	0.687	0.93
234_T	286_T	0.686	0.93
229_G	251_T	0.686	0.93
102_V	106_F	0.685	0.93
428_T	435_S	0.684	0.93
284_I	302_C	0.684	0.93
58_L	317_G	0.683	0.93
45_K	49_S	0.683	0.93
179_I	182_G	0.683	0.93
117_G	157_H	0.683	0.93
225_M	229_G	0.682	0.93
348_L	443_L	0.679	0.93
404_V	424_L	0.678	0.93
41_M	46_V	0.678	0.93
230_I	238_P	0.677	0.93
285_Y	288_G	0.671	0.92
228_F	233_L	0.670	0.92
354_A	367_A	0.670	0.92
125_L	129_A	0.668	0.92
137_M	203_D	0.666	0.92
110_I	117_G	0.665	0.92
23_N	26_V	0.663	0.92
245_V	248_I	0.663	0.92
199_R	202_P	0.660	0.92
232_F	236_M	0.658	0.91
189_C	200_I	0.656	0.91
109_G	116_V	0.655	0.91
41_M	329_S	0.655	0.91
52_S	328_D	0.653	0.91
409_F	413_K	0.652	0.91
388_A	392_L	0.651	0.91
393_A	397_G	0.650	0.91
96_K	104_S	0.649	0.91
283_A	287_M	0.646	0.91
220_F	223_S	0.645	0.91
12_L	15_L	0.645	0.91
358_R	402_S	0.644	0.91
266_I	269_L	0.643	0.90
117_G	147_L	0.643	0.90
67_F	158_P	0.642	0.90
152_G	364_A	0.639	0.90
189_C	192_V	0.638	0.90
342_M	347_I	0.638	0.90
226_P	240_I	0.634	0.90
222_E	227_G	0.633	0.90
234_T	250_M	0.633	0.90
80_G	83_R	0.632	0.90
367_A	371_T	0.630	0.90
293_K	297_D	0.630	0.90
218_R	221_S	0.628	0.89
198_Q	205_F	0.628	0.89
240_I	244_V	0.626	0.89
280_L	286_T	0.626	0.89
271_N	274_I	0.625	0.89
98_D	101_V	0.624	0.89
271_N	280_L	0.624	0.89
200_I	206_K	0.624	0.89
277_L	281_L	0.622	0.89
294_T	298_L	0.622	0.89
38_A	45_K	0.622	0.89
70_M	279_S	0.620	0.89
33_I	274_I	0.619	0.89
275_A	278_I	0.618	0.89
83_R	231_S	0.616	0.89
138_F	142_P	0.614	0.88
34_A	37_I	0.614	0.88
213_S	217_T	0.613	0.88
175_L	184_P	0.613	0.88
361_L	366_V	0.612	0.88
36_A	46_V	0.612	0.88
191_P	198_Q	0.612	0.88
49_S	52_S	0.611	0.88
163_I	167_Y	0.611	0.88
284_I	298_L	0.610	0.88
99_W	103_C	0.610	0.88
214_L	222_E	0.610	0.88
366_V	370_S	0.608	0.88
26_V	280_L	0.608	0.88
418_L	422_E	0.607	0.88
129_A	139_M	0.607	0.88
349_M	379_L	0.607	0.88
217_T	223_S	0.607	0.88
185_T	437_S	0.606	0.88
441_F	444_L	0.605	0.88
172_G	180_I	0.605	0.88
174_V	178_G	0.604	0.88
224_E	227_G	0.600	0.87
5_I	8_A	0.599	0.87
153_F	438_G	0.599	0.87
73_R	304_K	0.597	0.87
355_A	435_S	0.595	0.87
135_S	198_Q	0.595	0.87
343_D	347_I	0.595	0.87
112_L	276_M	0.594	0.87
166_E	373_G	0.593	0.87
225_M	228_F	0.593	0.87
403_H	431_S	0.591	0.86
44_S	47_V	0.591	0.86
303_G	307_A	0.591	0.86
228_F	235_A	0.590	0.86
407_A	410_W	0.589	0.86
230_I	286_T	0.588	0.86
235_A	241_L	0.588	0.86
229_G	240_I	0.588	0.86
359_I	428_T	0.587	0.86
194_N	204_A	0.587	0.86
232_F	238_P	0.585	0.86
153_F	396_A	0.585	0.86
214_L	219_R	0.585	0.86
280_L	284_I	0.585	0.86
203_D	207_K	0.584	0.86
434_L	438_G	0.583	0.86
148_L	399_C	0.582	0.86
402_S	431_S	0.581	0.85
368_A	371_T	0.581	0.85
112_L	323_K	0.578	0.85
196_F	207_K	0.576	0.85
246_T	251_T	0.576	0.85
300_D	307_A	0.574	0.85
224_E	232_F	0.573	0.85
225_M	231_S	0.573	0.85
238_P	246_T	0.572	0.85
216_A	227_G	0.572	0.85
100_A	107_I	0.572	0.85
37_I	43_L	0.572	0.85
300_D	303_G	0.571	0.85
112_L	116_V	0.569	0.84
315_I	369_I	0.568	0.84
101_V	139_M	0.568	0.84
382_H	386_N	0.567	0.84
106_F	149_V	0.566	0.84
146_G	150_A	0.565	0.84
399_C	408_S	0.565	0.84
350_A	390_I	0.564	0.84
334_Y	337_T	0.564	0.84
189_C	434_L	0.564	0.84
145_S	430_M	0.564	0.84
214_L	220_F	0.564	0.84
358_R	398_S	0.563	0.84
38_A	43_L	0.562	0.84
93_G	96_K	0.561	0.83
243_A	247_I	0.560	0.83
151_H	157_H	0.559	0.83
357_L	371_T	0.559	0.83
47_V	274_I	0.558	0.83
108_V	117_G	0.558	0.83
391_T	434_L	0.557	0.83
97_L	103_C	0.556	0.83
288_G	292_G	0.554	0.83
29_I	67_F	0.553	0.83
75_L	287_M	0.553	0.83
350_A	354_A	0.552	0.82
437_S	440_I	0.552	0.82
52_S	324_Q	0.550	0.82
219_R	222_E	0.549	0.82
63_L	66_G	0.549	0.82
355_A	401_C	0.548	0.82
99_W	102_V	0.547	0.82
192_V	201_I	0.545	0.82
13_L	360_C	0.544	0.82
80_G	287_M	0.544	0.82
46_V	50_V	0.544	0.82
426_S	430_M	0.541	0.81
275_A	281_L	0.540	0.81
244_V	250_M	0.540	0.81
184_P	441_F	0.538	0.81
35_V	38_A	0.537	0.81
122_V	416_F	0.534	0.80
151_H	155_P	0.534	0.80
41_M	45_K	0.534	0.80
114_F	118_L	0.533	0.80
215_G	219_R	0.533	0.80
196_F	208_E	0.532	0.80
154_L	157_H	0.531	0.80
160_P	364_A	0.531	0.80
157_H	160_P	0.528	0.80
21_K	27_S	0.528	0.80
226_P	234_T	0.527	0.80
73_R	76_A	0.527	0.80
108_V	121_L	0.526	0.79
194_N	205_F	0.526	0.79
41_M	44_S	0.525	0.79
243_A	250_M	0.524	0.79
337_T	341_G	0.523	0.79
201_I	207_K	0.523	0.79
109_G	157_H	0.522	0.79
30_I	34_A	0.522	0.79
332_G	336_S	0.521	0.79
269_L	273_T	0.520	0.79
196_F	202_P	0.520	0.79
178_G	183_I	0.519	0.78
335_I	360_C	0.517	0.78
355_A	359_I	0.516	0.78
242_M	245_V	0.516	0.78
413_K	416_F	0.515	0.78
6_V	331_V	0.515	0.78
273_T	287_M	0.512	0.78
226_P	229_G	0.511	0.77
82_Q	104_S	0.511	0.77
401_C	432_T	0.511	0.77
276_M	283_A	0.510	0.77
196_F	201_I	0.509	0.77
213_S	220_F	0.508	0.77
401_C	424_L	0.508	0.77
162_V	165_R	0.506	0.77
157_H	368_A	0.506	0.77
149_V	431_S	0.504	0.76
197_C	207_K	0.504	0.76
173_L	178_G	0.504	0.76
162_V	167_Y	0.503	0.76
346_P	390_I	0.502	0.76
12_L	19_K	0.502	0.76
46_V	51_E	0.501	0.76
105_A	117_G	0.501	0.76
223_S	226_P	0.500	0.76

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r1iA	2	0.9777	100	0.578	Contact Map
4r0cA	3	0.9599	100	0.599	Contact Map
4f35D	2	0.8797	100	0.647	Contact Map
2cfqA	1	0.8196	73.4	0.948	Contact Map
4pd6A	3	0.7283	67.2	0.95	Contact Map
4k0jA	3	0.3096	56.9	0.953	Contact Map
4dx5A	3	0.3497	53	0.954	Contact Map
3aqpA	1	0.3252	45.4	0.956	Contact Map
2nwlA	3	0.7372	43.9	0.957	Contact Map
3qe7A	2	0.4343	42.2	0.957	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0118 seconds.