YJGM - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YJGM - Uncharacterized N-acetyltransferase YjgM

UniProt:	P39337	Sequences: MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12532
Length:	167 (137)
Sequences:	16711 (13108)
Seq/√Len:	1119.9

ECOLI - YJGM YEDL RIMI MNAT PHNO YAFP YPEA YIAC YJAB RIML RIMJ YHHY ATDA YJHQ
BACSU - PAIA YTMI RIMI YSNE YHFO YWNH YBFA YQJY YYAR YESJ YUAI YHDJ YYCN YDGE YRKN YKKB SPSD YOAA YJDG YBBJ YOKL YDAF YVBK BLTD YNAD YJCK YXEL YOBR YITI
HALSA - Q9HSL3 Q9HMF0 Q9HMI8 Q9HQD2 Q9HRK6 Q9HNJ3 Q9HMZ2 Q9HRY5 Q9HP19 Q9HRY6
SULSO - Y209 Q7LXZ8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
12_R	66_E	3.409	1.00
113_M	144_F	2.909	1.00
106_K	142_L	2.777	1.00
28_Q	96_L	2.770	1.00
75_G	112_A	2.577	1.00
106_K	141_H	2.382	1.00
65_V	104_L	2.358	1.00
63_W	111_M	2.272	1.00
110_L	142_L	2.192	1.00
115_Q	119_M	2.170	1.00
67_Y	99_I	2.074	1.00
72_V	99_I	2.051	1.00
140_E	146_H	1.998	1.00
12_R	18_D	1.998	1.00
115_Q	118_E	1.967	1.00
113_M	124_C	1.955	1.00
111_M	114_E	1.867	1.00
64_V	71_V	1.831	1.00
126_L	139_Y	1.811	1.00
67_Y	72_V	1.810	1.00
109_A	142_L	1.781	1.00
88_C	116_A	1.741	1.00
73_G	95_F	1.731	1.00
136_I	140_E	1.730	1.00
67_Y	102_K	1.692	1.00
146_H	149_Y	1.639	1.00
21_A	24_R	1.585	1.00
66_E	71_V	1.571	1.00
61_A	115_Q	1.520	1.00
79_P	121_F	1.511	1.00
111_M	115_Q	1.500	1.00
100_R	134_E	1.493	1.00
62_Y	76_G	1.480	1.00
24_R	28_Q	1.461	1.00
106_K	110_L	1.430	1.00
77_I	112_A	1.405	1.00
99_I	102_K	1.404	1.00
14_L	22_I	1.396	1.00
86_D	122_K	1.390	1.00
137_A	140_E	1.387	1.00
70_E	98_A	1.371	1.00
136_I	146_H	1.349	1.00
88_C	121_F	1.345	1.00
23_A	27_R	1.296	1.00
70_E	96_L	1.277	1.00
66_E	69_G	1.256	1.00
14_L	64_V	1.237	1.00
21_A	71_V	1.228	1.00
87_I	125_Y	1.209	1.00
44_A	47_N	1.194	1.00
63_W	115_Q	1.192	1.00
75_G	108_L	1.182	1.00
77_I	116_A	1.167	1.00
10_V	66_E	1.164	1.00
114_E	118_E	1.163	1.00
128_T	132_L	1.159	1.00
24_R	96_L	1.154	1.00
116_A	124_C	1.143	1.00
103_G	106_K	1.139	1.00
135_A	139_Y	1.137	1.00
133_K	137_A	1.115	1.00
87_I	123_R	1.113	1.00
28_Q	97_P	1.112	1.00
109_A	139_Y	1.094	1.00
124_C	144_F	1.090	1.00
61_A	119_M	1.083	1.00
90_L	109_A	1.080	1.00
133_K	136_I	1.062	1.00
29_V	94_Y	1.060	1.00
18_D	66_E	1.057	1.00
28_Q	98_A	1.052	1.00
67_Y	70_E	1.038	1.00
128_T	136_I	1.005	1.00
77_I	115_Q	1.005	1.00
95_F	104_L	0.999	1.00
13_R	61_A	0.991	1.00
16_L	52_Y	0.956	1.00
96_L	99_I	0.941	1.00
13_R	115_Q	0.926	1.00
110_L	114_E	0.925	1.00
138_L	142_L	0.923	1.00
25_V	29_V	0.923	1.00
79_P	119_M	0.917	1.00
11_M	63_W	0.914	1.00
21_A	70_E	0.905	1.00
132_L	135_A	0.894	1.00
113_M	117_R	0.891	1.00
41_Y	45_D	0.872	1.00
19_N	23_A	0.859	1.00
70_E	99_I	0.858	1.00
78_A	91_Q	0.857	1.00
109_A	138_L	0.855	1.00
11_M	111_M	0.844	1.00
65_V	73_G	0.842	1.00
25_V	71_V	0.839	1.00
107_K	110_L	0.828	1.00
25_V	96_L	0.828	1.00
93_M	139_Y	0.825	1.00
101_G	134_E	0.823	1.00
130_A	149_Y	0.823	1.00
22_I	74_G	0.820	1.00
26_I	74_G	0.818	1.00
32_E	97_P	0.799	1.00
93_M	109_A	0.794	1.00
43_V	47_N	0.787	1.00
20_P	24_R	0.785	1.00
89_E	125_Y	0.782	1.00
52_Y	56_S	0.782	1.00
29_V	33_Y	0.781	1.00
76_G	91_Q	0.773	1.00
72_V	104_L	0.771	1.00
43_V	46_P	0.754	1.00
42_T	46_P	0.754	1.00
11_M	107_K	0.750	1.00
41_Y	44_A	0.743	1.00
125_Y	147_I	0.742	1.00
14_L	62_Y	0.739	1.00
126_L	135_A	0.735	1.00
44_A	48_L	0.734	1.00
14_L	19_N	0.734	1.00
15_T	18_D	0.731	1.00
128_T	135_A	0.727	1.00
57_Q	60_H	0.726	1.00
113_M	142_L	0.723	1.00
107_K	111_M	0.721	1.00
27_R	31_A	0.720	1.00
80_L	89_E	0.716	1.00
104_L	107_K	0.709	1.00
30_S	94_Y	0.700	1.00
116_A	121_F	0.697	1.00
74_G	94_Y	0.696	1.00
75_G	93_M	0.694	1.00
109_A	144_F	0.692	1.00
75_G	90_L	0.686	1.00
30_S	34_G	0.684	1.00
81_T	86_D	0.682	1.00
16_L	19_N	0.682	1.00
110_L	113_M	0.679	1.00
129_T	132_L	0.677	1.00
88_C	124_C	0.675	1.00
47_N	50_E	0.675	1.00
24_R	70_E	0.674	1.00
128_T	139_Y	0.671	1.00
90_L	126_L	0.669	1.00
21_A	66_E	0.669	1.00
65_V	108_L	0.664	1.00
111_M	118_E	0.659	1.00
47_N	51_L	0.651	1.00
50_E	53_Q	0.644	1.00
21_A	25_V	0.640	1.00
51_L	54_V	0.636	1.00
51_L	55_Y	0.627	1.00
13_R	63_W	0.624	1.00
79_P	88_C	0.623	1.00
46_P	49_D	0.618	1.00
31_A	35_L	0.617	1.00
106_K	137_A	0.616	1.00
114_E	117_R	0.615	1.00
33_Y	36_T	0.615	1.00
105_A	138_L	0.615	1.00
24_R	27_R	0.610	1.00
101_G	137_A	0.606	1.00
25_V	94_Y	0.602	1.00
50_E	54_V	0.601	1.00
26_I	94_Y	0.598	1.00
65_V	95_F	0.598	1.00
31_A	34_G	0.597	1.00
26_I	92_K	0.595	1.00
52_Y	55_Y	0.592	1.00
20_P	23_A	0.592	1.00
90_L	112_A	0.584	1.00
45_D	48_L	0.582	1.00
99_I	104_L	0.579	1.00
132_L	136_I	0.575	1.00
137_A	141_H	0.574	1.00
65_V	107_K	0.573	1.00
100_R	135_A	0.571	1.00
109_A	113_M	0.570	1.00
26_I	30_S	0.564	1.00
89_E	92_K	0.563	1.00
12_R	15_T	0.560	1.00
90_L	139_Y	0.560	1.00
74_G	92_K	0.558	1.00
134_E	137_A	0.553	1.00
21_A	96_L	0.549	1.00
49_D	53_Q	0.545	1.00
30_S	36_T	0.535	1.00
62_Y	66_E	0.535	1.00
126_L	144_F	0.533	1.00
12_R	64_V	0.529	1.00
61_A	79_P	0.523	1.00
95_F	108_L	0.522	1.00
14_L	18_D	0.520	1.00
29_V	34_G	0.519	1.00
48_L	51_L	0.519	1.00
11_M	108_L	0.515	1.00
42_T	47_N	0.514	1.00
93_M	126_L	0.512	1.00
61_A	77_I	0.511	1.00
72_V	98_A	0.510	1.00
93_M	135_A	0.508	1.00
73_G	108_L	0.507	1.00
101_G	141_H	0.507	1.00
60_H	76_G	0.505	1.00
42_T	45_D	0.503	1.00
32_E	36_T	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3dr6A	2	0.9341	99.9	0.297	Contact Map
2j8mA	2	0.9341	99.9	0.306	Contact Map
2r7hA	2	0.9281	99.9	0.307	Contact Map
3d8pA	1	0.9281	99.9	0.314	Contact Map
2q7bA	2	0.9401	99.9	0.321	Contact Map
1gheA	1	0.9521	99.9	0.327	Contact Map
2ob0A	1	0.9042	99.9	0.33	Contact Map
2fiaA	1	0.9281	99.9	0.333	Contact Map
4kvxA	1	0.8743	99.9	0.333	Contact Map
4h89A	2	0.9461	99.9	0.335	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0078 seconds.