YJFP - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YJFP - Esterase YjfP

UniProt:	P39298	Sequences: MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYSYFAVALAQAGLRVIMPDAPDHGSRFSGDAARRLNQFWQILLQSMQEFTTLRAAIAEENWLLDDRLAVGGASMGAMTALGITARHPTVRCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNNIVAPLAEWEATNHLEQLSDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDAAVTFFRQHL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12490
Length:	249 (213)
Sequences:	48743 (35722)
Seq/√Len:	2447.6

ECOLI - YJFP FRSA PTRB YCJY DLHH YGHX YFHR PLDB MHPC YIEL RUTD YBFF YPFH BIOH
BACSU - YITV YUXL CAH YTAP YTMA YQKD EST PLBAC YBFK YBAC YQJL YFHM YUGF NAP YISY YDJP RSBQ YCGS YBDG
HALSA - Q9HS46 Q9HN07 Q9HPY2 Q9HP29 Q9HPT9 Q9HHP4
SULSO - Q97VD6 Q7LX61 Q97YB2 Q97VT8 PIP Q97VW1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
110_A	133_C	4.562	1.00
63_P	90_E	3.734	1.00
125_T	134_T	3.125	1.00
195_L	227_P	3.090	1.00
224_S	240_A	3.016	1.00
53_A	242_V	2.824	1.00
195_L	225_W	2.516	1.00
202_A	225_W	2.458	1.00
226_Q	240_A	2.370	1.00
33_Y	91_F	2.223	1.00
136_S	139_G	2.131	1.00
92_T	128_H	2.129	1.00
110_A	245_F	2.041	1.00
92_T	124_I	2.020	1.00
184_L	187_R	1.976	1.00
29_C	56_R	1.888	1.00
95_R	109_L	1.873	1.00
92_T	96_A	1.868	1.00
111_V	121_A	1.868	1.00
206_L	225_W	1.859	1.00
46_F	238_L	1.798	1.00
19_P	56_R	1.795	1.00
121_A	134_T	1.790	1.00
108_R	132_R	1.743	1.00
123_G	127_R	1.699	1.00
27_L	56_R	1.694	1.00
240_A	243_T	1.687	1.00
53_A	246_R	1.678	1.00
16_H	56_R	1.676	1.00
49_A	53_A	1.671	1.00
189_L	212_L	1.654	1.00
33_Y	62_A	1.640	1.00
96_A	130_T	1.612	1.00
180_H	183_Q	1.584	1.00
202_A	206_L	1.574	1.00
122_L	136_S	1.573	1.00
222_T	240_A	1.561	1.00
91_F	124_I	1.547	1.00
18_Y	56_R	1.537	1.00
209_Q	223_C	1.517	1.00
58_I	94_L	1.506	1.00
206_L	210_Q	1.502	1.00
22_Q	27_L	1.474	1.00
118_A	139_G	1.472	1.00
135_A	241_A	1.469	1.00
88_M	123_G	1.447	1.00
55_L	246_R	1.440	1.00
97_A	101_E	1.435	1.00
40_S	67_S	1.430	1.00
17_A	59_M	1.426	1.00
193_H	202_A	1.416	1.00
207_R	211_A	1.416	1.00
193_H	205_S	1.416	1.00
92_T	127_R	1.407	1.00
190_L	224_S	1.403	1.00
226_Q	229_V	1.402	1.00
110_A	132_R	1.398	1.00
29_C	58_I	1.396	1.00
35_G	115_S	1.391	1.00
47_A	59_M	1.362	1.00
30_V	55_L	1.360	1.00
124_I	128_H	1.348	1.00
49_A	238_L	1.346	1.00
239_D	243_T	1.343	1.00
123_G	126_A	1.336	1.00
49_A	242_V	1.334	1.00
33_Y	121_A	1.320	1.00
28_P	108_R	1.316	1.00
137_M	237_A	1.306	1.00
134_T	189_L	1.289	1.00
89_Q	127_R	1.282	1.00
99_A	130_T	1.278	1.00
33_Y	60_P	1.270	1.00
49_A	52_Q	1.270	1.00
114_A	138_M	1.263	1.00
58_I	98_I	1.257	1.00
242_V	246_R	1.252	1.00
209_Q	215_T	1.232	1.00
32_F	112_G	1.227	1.00
36_F	116_M	1.209	1.00
51_A	57_V	1.203	1.00
84_L	87_S	1.202	1.00
15_L	40_S	1.201	1.00
97_A	100_E	1.192	1.00
237_A	241_A	1.185	1.00
196_D	228_G	1.180	1.00
135_A	245_F	1.167	1.00
168_I	171_P	1.162	1.00
30_V	112_G	1.160	1.00
195_L	228_G	1.160	1.00
60_P	91_F	1.156	1.00
34_H	62_A	1.154	1.00
213_S	216_G	1.150	1.00
112_G	137_M	1.134	1.00
16_H	58_I	1.126	1.00
207_R	210_Q	1.119	1.00
28_P	55_L	1.118	1.00
62_A	120_T	1.113	1.00
29_C	98_I	1.098	1.00
96_A	100_E	1.096	1.00
14_V	58_I	1.094	1.00
32_F	57_V	1.093	1.00
111_V	124_I	1.076	1.00
33_Y	111_V	1.073	1.00
96_A	128_H	1.072	1.00
60_P	94_L	1.071	1.00
195_L	202_A	1.071	1.00
126_A	180_H	1.069	1.00
48_V	52_Q	1.057	1.00
95_R	131_V	1.052	1.00
34_H	65_H	1.048	1.00
182_E	211_A	1.047	1.00
110_A	135_A	1.041	1.00
193_H	225_W	1.039	1.00
164_E	167_N	1.028	1.00
14_V	94_L	1.027	1.00
93_T	96_A	1.025	1.00
206_L	223_C	1.025	1.00
55_L	110_A	1.007	1.00
37_T	65_H	0.996	1.00
38_S	42_V	0.992	1.00
112_G	135_A	0.992	1.00
13_P	67_S	0.991	1.00
192_W	226_Q	0.988	1.00
138_M	197_D	0.976	1.00
114_A	137_M	0.976	1.00
123_G	180_H	0.960	1.00
86_Q	89_Q	0.959	1.00
29_C	109_L	0.957	1.00
55_L	245_F	0.952	1.00
193_H	223_C	0.949	1.00
30_V	50_L	0.931	1.00
85_L	127_R	0.930	1.00
31_I	95_R	0.929	1.00
192_W	224_S	0.926	1.00
44_S	48_V	0.921	1.00
28_P	110_A	0.916	1.00
138_M	233_I	0.914	1.00
136_S	191_L	0.911	1.00
83_I	86_Q	0.907	1.00
193_H	200_V	0.907	1.00
71_G	74_A	0.905	1.00
122_L	208_L	0.902	1.00
191_L	209_Q	0.897	1.00
19_P	27_L	0.896	1.00
134_T	187_R	0.896	1.00
37_T	115_S	0.887	1.00
62_A	116_M	0.886	1.00
191_L	205_S	0.886	1.00
40_S	59_M	0.885	1.00
192_W	237_A	0.879	1.00
47_A	51_A	0.879	1.00
203_D	206_L	0.858	1.00
91_F	120_T	0.857	1.00
229_V	233_I	0.852	1.00
32_F	47_A	0.843	1.00
209_Q	213_S	0.842	1.00
191_L	208_L	0.839	1.00
125_T	187_R	0.834	1.00
18_Y	22_Q	0.827	1.00
94_L	98_I	0.826	1.00
122_L	139_G	0.820	1.00
135_A	190_L	0.814	1.00
127_R	180_H	0.812	1.00
13_P	61_D	0.812	1.00
89_Q	93_T	0.811	1.00
40_S	61_D	0.809	1.00
92_T	130_T	0.809	1.00
165_F	168_I	0.807	1.00
163_N	167_N	0.796	1.00
119_M	140_S	0.795	1.00
89_Q	92_T	0.795	1.00
203_D	207_R	0.791	1.00
173_A	179_N	0.788	1.00
32_F	43_Y	0.787	1.00
85_L	89_Q	0.786	1.00
176_E	179_N	0.783	1.00
114_A	232_R	0.775	1.00
162_Q	165_F	0.772	1.00
62_A	65_H	0.765	1.00
22_Q	25_T	0.758	1.00
178_T	211_A	0.757	1.00
138_M	194_G	0.755	1.00
16_H	19_P	0.752	1.00
133_C	137_M	0.751	1.00
169_V	172_L	0.748	1.00
17_A	51_A	0.744	1.00
94_L	97_A	0.741	1.00
209_Q	216_G	0.738	1.00
17_A	57_V	0.738	1.00
38_S	119_M	0.738	1.00
205_S	223_C	0.738	1.00
21_G	27_L	0.733	1.00
133_C	245_F	0.721	1.00
43_Y	46_F	0.721	1.00
150_L	153_P	0.715	1.00
138_M	193_H	0.714	1.00
95_R	124_I	0.712	1.00
149_S	153_P	0.712	1.00
204_E	207_R	0.709	1.00
198_D	230_R	0.707	1.00
88_M	92_T	0.707	1.00
99_A	102_N	0.706	1.00
18_Y	21_G	0.705	1.00
162_Q	166_N	0.705	1.00
205_S	209_Q	0.704	1.00
95_R	100_E	0.703	1.00
47_A	57_V	0.702	1.00
238_L	241_A	0.699	1.00
206_L	209_Q	0.692	1.00
30_V	57_V	0.689	1.00
133_C	244_F	0.689	1.00
28_P	107_D	0.689	1.00
137_M	241_A	0.686	1.00
229_V	236_E	0.686	1.00
152_P	155_I	0.686	1.00
82_Q	86_Q	0.676	1.00
212_L	215_T	0.674	1.00
114_A	234_T	0.673	1.00
149_S	152_P	0.669	1.00
50_L	112_G	0.665	1.00
142_Y	207_R	0.662	1.00
31_I	60_P	0.661	1.00
148_R	151_F	0.659	1.00
151_F	154_L	0.657	1.00
87_S	120_T	0.653	1.00
102_N	106_D	0.651	1.00
32_F	59_M	0.647	1.00
82_Q	85_L	0.647	1.00
88_M	120_T	0.644	1.00
112_G	241_A	0.642	1.00
190_L	222_T	0.641	1.00
179_N	182_E	0.640	1.00
163_N	166_N	0.639	1.00
48_V	51_A	0.637	1.00
168_I	172_L	0.636	1.00
145_S	148_R	0.635	1.00
61_D	66_G	0.635	1.00
30_V	245_F	0.634	1.00
113_G	121_A	0.634	1.00
118_A	136_S	0.633	1.00
177_A	180_H	0.632	1.00
17_A	47_A	0.630	1.00
170_A	174_E	0.629	1.00
45_Y	48_V	0.628	1.00
178_T	207_R	0.625	1.00
31_I	58_I	0.625	1.00
95_R	99_A	0.621	1.00
14_V	97_A	0.616	1.00
243_T	246_R	0.614	1.00
109_L	131_V	0.614	1.00
137_M	192_W	0.613	1.00
141_G	208_L	0.613	1.00
92_T	95_R	0.609	1.00
30_V	110_A	0.608	1.00
29_C	100_E	0.606	1.00
202_A	223_C	0.605	1.00
124_I	131_V	0.603	1.00
100_E	109_L	0.602	1.00
122_L	141_G	0.599	1.00
166_N	169_V	0.599	1.00
150_L	155_I	0.595	1.00
170_A	173_A	0.595	1.00
147_A	150_L	0.592	1.00
44_S	59_M	0.590	1.00
13_P	40_S	0.589	1.00
190_L	240_A	0.589	1.00
167_N	171_P	0.587	1.00
178_T	181_L	0.582	1.00
152_P	156_P	0.582	1.00
191_L	212_L	0.582	1.00
165_F	169_V	0.580	1.00
37_T	116_M	0.575	1.00
99_A	106_D	0.575	1.00
164_E	171_P	0.575	1.00
142_Y	145_S	0.573	1.00
111_V	131_V	0.572	1.00
49_A	239_D	0.572	1.00
41_L	44_S	0.570	1.00
150_L	154_L	0.566	1.00
51_A	54_G	0.565	1.00
129_P	185_S	0.560	1.00
31_I	109_L	0.558	1.00
151_F	155_I	0.557	1.00
26_P	56_R	0.556	1.00
166_N	170_A	0.555	1.00
137_M	234_T	0.552	1.00
238_L	242_V	0.551	1.00
36_F	65_H	0.549	1.00
115_S	231_H	0.541	1.00
119_M	123_G	0.537	1.00
111_V	134_T	0.535	1.00
142_Y	176_E	0.535	1.00
126_A	183_Q	0.534	1.00
33_Y	120_T	0.533	1.00
55_L	242_V	0.531	1.00
88_M	127_R	0.528	1.00
181_L	211_A	0.526	1.00
210_Q	214_E	0.526	1.00
50_L	241_A	0.524	1.00
230_R	236_E	0.524	1.00
135_A	192_W	0.522	1.00
62_A	87_S	0.521	1.00
165_F	172_L	0.520	1.00
15_L	18_Y	0.519	1.00
167_N	170_A	0.517	1.00
58_I	102_N	0.515	1.00
192_W	240_A	0.515	1.00
36_F	62_A	0.511	1.00
22_Q	26_P	0.510	1.00
95_R	130_T	0.505	1.00
146_L	150_L	0.505	1.00
87_S	116_M	0.504	1.00
118_A	200_V	0.504	1.00
84_L	116_M	0.503	1.00
50_L	57_V	0.502	1.00
99_A	107_D	0.502	1.00
191_L	223_C	0.502	1.00
68_R	72_D	0.500	1.00
61_D	67_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2z3zA	2	0.9478	100	0.27	Contact Map
4q1vA	2	0.9478	100	0.27	Contact Map
2ecfA	2	0.9478	100	0.274	Contact Map
1xfdA	2	0.9478	100	0.275	Contact Map
4wjlA	2	0.9478	100	0.285	Contact Map
3azoA	1	0.9759	100	0.285	Contact Map
4hxfB	4	0.9679	100	0.288	Contact Map
3o4hA	2	0.9398	100	0.298	Contact Map
1z68A	2	0.9558	100	0.298	Contact Map
4a5sA	2	0.9558	100	0.301	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0083 seconds.