YJEH - ECOLI - GREMLIN Contacts

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YJEH - Inner membrane protein YjeH

UniProt:	P39277	Sequences: MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPVLIILVFPIAIVFAILGRHYPSAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPAALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTRGASSSANLQTVIAGLIVALIVAIWWAGDIKPANIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWGCTVVVLHFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGYLACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIHALEINLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKSLYALIMLAGLWLLLPKRKTPENGITT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12470
Length:	418 (398)
Sequences:	24499 (15910)
Seq/√Len:	797.5

ECOLI - YJEH POTE ARCD AROP FRLA ADIC ANSP CADB PLAP PROY YIFK GABP PUUP MMUP YJEM PHEP YBAT CYCA LYSP YCAM YGJI GADC TNAB
BACSU - YECA YBEC YTNA YHDG YBXG YBGF ROCC ASPP AAPA YDGF GABP ARCD YVBW YCGH STET HUTM YFNA ROCE YDAO GERBB YNDE GERAB GERKB YFKT
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97U05 Q97XM0 Q97ZB5 Q97X49 Q97WS3 Q97Z63 Q7LXI7 Q97WD4 Q97VR4 Q97VA8 Q97U33 Q97Y76 Q97VA6 Q97YN3 Q97YX9 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
134_W	323_L	4.395	1.00
305_Y	317_N	4.362	1.00
364_K	368_G	3.333	1.00
49_I	229_G	3.182	1.00
308_R	317_N	3.111	1.00
215_R	219_R	3.011	1.00
9_G	211_K	2.940	1.00
210_F	216_D	2.769	1.00
73_A	300_H	2.702	1.00
212_N	215_R	2.648	1.00
298_A	307_A	2.635	1.00
310_S	316_N	2.589	1.00
89_G	297_Q	2.582	1.00
127_L	327_V	2.489	1.00
61_I	366_L	2.424	1.00
305_Y	308_R	2.422	1.00
14_I	223_I	2.398	1.00
266_G	270_I	2.317	1.00
356_L	378_G	2.281	1.00
209_E	292_R	2.271	1.00
208_S	299_Q	2.266	1.00
10_L	223_I	2.266	1.00
77_G	85_E	2.252	1.00
10_L	216_D	2.156	1.00
135_Y	139_R	2.145	1.00
295_W	299_Q	2.142	1.00
320_N	324_G	2.127	1.00
257_K	260_V	2.094	1.00
405_L	409_R	2.068	1.00
13_G	210_F	2.066	1.00
127_L	330_T	2.060	1.00
10_L	14_I	2.056	1.00
166_G	238_V	2.055	1.00
138_T	316_N	2.042	1.00
169_K	172_N	2.042	1.00
142_S	146_N	2.035	1.00
134_W	319_L	2.032	1.00
126_E	330_T	2.017	1.00
247_E	261_Q	2.011	1.00
375_V	379_L	2.007	1.00
80_F	364_K	2.000	1.00
397_I	401_G	1.997	1.00
131_A	327_V	1.994	1.00
359_M	377_G	1.990	1.00
93_L	322_V	1.979	1.00
58_V	359_M	1.973	1.00
219_R	223_I	1.962	1.00
9_G	12_Q	1.938	1.00
153_G	157_A	1.904	1.00
50_I	54_P	1.884	1.00
301_N	304_H	1.875	1.00
77_G	82_S	1.868	1.00
306_L	321_A	1.847	1.00
244_A	247_E	1.817	1.00
33_A	41_S	1.807	1.00
80_F	360_L	1.786	1.00
90_W	403_W	1.777	1.00
44_A	189_A	1.750	1.00
257_K	261_Q	1.723	1.00
212_N	216_D	1.716	1.00
364_K	367_Q	1.712	1.00
383_L	387_M	1.703	1.00
12_Q	149_T	1.692	1.00
137_G	284_N	1.689	1.00
76_V	88_T	1.687	1.00
131_A	323_L	1.681	1.00
104_L	283_L	1.668	1.00
404_L	408_K	1.667	1.00
379_L	383_L	1.651	1.00
372_L	376_V	1.648	1.00
222_M	226_L	1.641	1.00
157_A	161_A	1.641	1.00
310_S	314_I	1.640	1.00
88_T	357_L	1.625	1.00
130_L	326_C	1.618	1.00
138_T	320_N	1.612	1.00
17_L	224_G	1.597	1.00
121_Q	124_L	1.595	1.00
100_L	326_C	1.585	1.00
40_N	186_L	1.575	1.00
226_L	230_L	1.554	1.00
393_L	397_I	1.551	1.00
14_I	227_L	1.538	1.00
398_M	402_L	1.522	1.00
104_L	130_L	1.513	1.00
111_G	125_A	1.507	1.00
399_L	403_W	1.495	1.00
81_G	84_L	1.488	1.00
8_L	12_Q	1.483	1.00
206_L	288_Q	1.471	1.00
294_V	318_A	1.468	1.00
295_W	309_L	1.465	1.00
134_W	320_N	1.450	1.00
170_P	173_I	1.450	1.00
156_V	160_V	1.438	1.00
389_G	392_S	1.436	1.00
269_W	273_V	1.427	1.00
317_N	321_A	1.421	1.00
290_F	322_V	1.415	1.00
158_L	274_I	1.401	1.00
5_K	313_H	1.397	1.00
212_N	219_R	1.395	1.00
304_H	307_A	1.395	1.00
127_L	131_A	1.395	1.00
76_V	357_L	1.386	1.00
48_L	193_M	1.378	1.00
80_F	84_L	1.377	1.00
374_A	377_G	1.374	1.00
168_I	241_H	1.370	1.00
213_P	218_P	1.370	1.00
69_A	208_S	1.365	1.00
107_A	276_Y	1.355	1.00
56_A	225_L	1.355	1.00
360_L	378_G	1.354	1.00
260_V	268_L	1.344	1.00
367_Q	370_Y	1.344	1.00
12_Q	145_A	1.342	1.00
304_H	308_R	1.341	1.00
395_A	398_M	1.337	1.00
291_A	319_L	1.331	1.00
56_A	221_L	1.329	1.00
381_C	384_L	1.328	1.00
401_G	405_L	1.324	1.00
168_I	173_I	1.314	1.00
51_L	380_L	1.312	1.00
8_L	13_G	1.310	1.00
230_L	234_G	1.308	1.00
66_Y	78_M	1.306	1.00
55_I	359_M	1.303	1.00
175_F	178_P	1.302	1.00
61_I	64_R	1.300	1.00
308_R	316_N	1.293	1.00
372_L	375_V	1.290	1.00
107_A	129_T	1.285	1.00
360_L	364_K	1.284	1.00
130_L	323_L	1.277	1.00
403_W	406_L	1.271	1.00
163_W	234_G	1.270	1.00
366_L	370_Y	1.256	1.00
162_I	166_G	1.256	1.00
79_A	361_A	1.253	1.00
216_D	219_R	1.251	1.00
57_I	222_M	1.242	1.00
74_H	78_M	1.241	1.00
263_F	267_A	1.240	1.00
374_A	381_C	1.236	1.00
21_L	228_A	1.236	1.00
133_V	283_L	1.230	1.00
394_Y	398_M	1.218	1.00
377_G	380_L	1.217	1.00
28_A	106_I	1.216	1.00
396_L	400_A	1.212	1.00
392_S	396_L	1.211	1.00
10_L	219_R	1.208	1.00
393_L	396_L	1.196	1.00
86_R	90_W	1.196	1.00
294_V	302_P	1.192	1.00
42_L	237_V	1.185	1.00
8_L	145_A	1.178	1.00
50_I	376_V	1.175	1.00
54_P	376_V	1.170	1.00
123_L	127_L	1.163	1.00
93_L	294_V	1.157	1.00
251_A	257_K	1.150	1.00
391_K	395_A	1.150	1.00
103_A	282_S	1.146	1.00
161_A	165_A	1.145	1.00
398_M	401_G	1.142	1.00
382_V	386_A	1.142	1.00
169_K	173_I	1.141	1.00
251_A	254_S	1.141	1.00
317_N	320_N	1.132	1.00
68_S	74_H	1.132	1.00
374_A	380_L	1.127	1.00
260_V	265_V	1.125	1.00
211_K	216_D	1.121	1.00
11_A	15_G	1.116	1.00
182_E	185_G	1.115	1.00
174_P	178_P	1.113	1.00
377_G	381_C	1.109	1.00
374_A	378_G	1.108	1.00
136_I	147_L	1.102	1.00
76_V	84_L	1.102	1.00
166_G	242_F	1.102	1.00
245_Y	248_K	1.100	1.00
374_A	386_A	1.100	1.00
7_E	211_K	1.096	1.00
299_Q	307_A	1.095	1.00
356_L	382_V	1.093	1.00
59_F	72_V	1.087	1.00
80_F	83_R	1.084	1.00
17_L	203_F	1.082	1.00
124_L	128_G	1.081	1.00
309_L	313_H	1.073	1.00
148_Q	284_N	1.073	1.00
168_I	172_N	1.072	1.00
402_L	405_L	1.072	1.00
108_A	125_A	1.071	1.00
63_G	75_F	1.065	1.00
34_A	41_S	1.064	1.00
324_G	328_V	1.061	1.00
390_W	394_Y	1.060	1.00
46_P	233_W	1.055	1.00
16_L	206_L	1.047	1.00
18_S	227_L	1.047	1.00
131_A	135_Y	1.046	1.00
394_Y	397_I	1.040	1.00
167_D	170_P	1.035	1.00
65_H	370_Y	1.025	1.00
111_G	115_F	1.025	1.00
73_A	296_S	1.012	1.00
392_S	395_A	1.009	1.00
397_I	400_A	1.004	1.00
58_V	374_A	1.003	1.00
134_W	138_T	1.003	1.00
13_G	220_A	1.000	1.00
198_V	351_F	0.993	1.00
128_G	132_L	0.992	1.00
147_L	151_I	0.991	1.00
383_L	386_A	0.990	1.00
381_C	385_L	0.990	1.00
78_M	369_R	0.987	1.00
390_W	393_L	0.986	1.00
160_V	164_W	0.982	1.00
146_N	150_V	0.969	1.00
393_L	398_M	0.968	1.00
374_A	384_L	0.962	1.00
174_P	177_A	0.957	1.00
244_A	261_Q	0.951	1.00
392_S	397_I	0.947	1.00
18_S	228_A	0.945	1.00
207_A	217_F	0.945	1.00
138_T	310_S	0.942	1.00
380_L	383_L	0.939	1.00
397_I	406_L	0.937	1.00
68_S	78_M	0.932	1.00
163_W	238_V	0.930	1.00
42_L	240_L	0.927	1.00
138_T	314_I	0.927	1.00
132_L	280_F	0.924	1.00
162_I	259_V	0.923	1.00
70_G	73_A	0.920	1.00
391_K	394_Y	0.918	1.00
384_L	387_M	0.916	1.00
188_A	192_V	0.916	1.00
237_V	241_H	0.916	1.00
133_V	284_N	0.912	1.00
253_A	257_K	0.909	1.00
108_A	126_E	0.909	1.00
151_I	281_A	0.906	1.00
141_A	288_Q	0.905	1.00
183_L	186_L	0.902	1.00
356_L	360_L	0.900	1.00
377_G	386_A	0.899	1.00
201_E	205_H	0.896	1.00
392_S	398_M	0.895	1.00
378_G	381_C	0.889	1.00
49_I	197_F	0.888	1.00
265_V	269_W	0.883	1.00
242_F	258_I	0.882	1.00
77_G	300_H	0.881	1.00
102_A	195_W	0.881	1.00
392_S	406_L	0.880	1.00
403_W	407_P	0.878	1.00
388_V	393_L	0.870	1.00
102_A	344_I	0.868	1.00
287_I	323_L	0.866	1.00
229_G	233_W	0.862	1.00
115_F	118_H	0.861	1.00
168_I	171_A	0.861	1.00
70_G	74_H	0.860	1.00
90_W	302_P	0.859	1.00
380_L	384_L	0.859	1.00
43_W	186_L	0.858	1.00
223_I	227_L	0.855	1.00
107_A	279_C	0.853	1.00
397_I	403_W	0.852	1.00
392_S	399_L	0.851	1.00
402_L	406_L	0.849	1.00
308_R	311_S	0.844	1.00
396_L	403_W	0.838	1.00
302_P	306_L	0.837	1.00
118_H	121_Q	0.834	1.00
177_A	181_I	0.832	1.00
388_V	392_S	0.830	1.00
378_G	382_V	0.829	1.00
390_W	397_I	0.827	1.00
22_L	25_G	0.823	1.00
76_V	361_A	0.817	1.00
306_L	317_N	0.817	1.00
377_G	387_M	0.816	1.00
15_G	149_T	0.815	1.00
53_F	57_I	0.810	1.00
111_G	276_Y	0.810	1.00
405_L	408_K	0.809	1.00
346_Y	350_I	0.803	1.00
396_L	405_L	0.795	1.00
12_Q	146_N	0.795	1.00
146_N	149_T	0.794	1.00
323_L	327_V	0.794	1.00
112_Q	122_L	0.794	1.00
264_G	267_A	0.793	1.00
316_N	320_N	0.792	1.00
54_P	58_V	0.791	1.00
363_C	367_Q	0.790	1.00
406_L	409_R	0.788	1.00
176_P	181_I	0.788	1.00
202_A	289_S	0.787	1.00
7_E	142_S	0.787	1.00
123_L	330_T	0.787	1.00
62_L	362_G	0.787	1.00
10_L	220_A	0.785	1.00
83_R	404_L	0.783	1.00
155_I	278_A	0.782	1.00
84_L	357_L	0.781	1.00
33_A	37_A	0.781	1.00
125_A	128_G	0.781	1.00
156_V	231_V	0.780	1.00
135_Y	138_T	0.780	1.00
167_D	171_A	0.779	1.00
362_G	366_L	0.777	1.00
11_A	149_T	0.775	1.00
107_A	280_F	0.774	1.00
46_P	50_I	0.768	1.00
198_V	355_Y	0.767	1.00
374_A	385_L	0.766	1.00
391_K	405_L	0.763	1.00
108_A	122_L	0.763	1.00
388_V	391_K	0.762	1.00
99_G	347_A	0.762	1.00
212_N	218_P	0.762	1.00
375_V	386_A	0.761	1.00
83_R	87_V	0.760	1.00
11_A	146_N	0.759	1.00
183_L	187_F	0.758	1.00
324_G	327_V	0.754	1.00
292_R	295_W	0.751	1.00
377_G	384_L	0.748	1.00
363_C	375_V	0.741	1.00
175_F	180_N	0.740	1.00
73_A	77_G	0.737	1.00
392_S	405_L	0.736	1.00
145_A	149_T	0.735	1.00
396_L	406_L	0.735	1.00
14_I	220_A	0.734	1.00
397_I	409_R	0.733	1.00
365_L	370_Y	0.732	1.00
62_L	75_F	0.732	1.00
61_I	65_H	0.729	1.00
187_F	383_L	0.728	1.00
393_L	399_L	0.728	1.00
130_L	330_T	0.726	1.00
53_F	222_M	0.726	1.00
26_V	235_C	0.726	1.00
311_S	316_N	0.725	1.00
133_V	287_I	0.723	1.00
388_V	399_L	0.722	1.00
238_V	241_H	0.719	1.00
234_G	238_V	0.718	1.00
137_G	319_L	0.718	1.00
349_G	396_L	0.717	1.00
21_L	224_G	0.714	1.00
247_E	250_A	0.713	1.00
392_S	403_W	0.711	1.00
218_P	221_L	0.711	1.00
372_L	380_L	0.710	1.00
400_A	404_L	0.707	1.00
393_L	404_L	0.701	1.00
388_V	397_I	0.698	1.00
139_R	143_S	0.695	1.00
92_F	96_I	0.686	1.00
133_V	280_F	0.686	1.00
7_E	141_A	0.685	1.00
399_L	406_L	0.681	1.00
22_L	155_I	0.680	1.00
391_K	396_L	0.680	1.00
287_I	291_A	0.679	1.00
43_W	47_V	0.678	1.00
266_G	269_W	0.677	1.00
69_A	295_W	0.677	1.00
41_S	236_T	0.676	1.00
365_L	369_R	0.676	1.00
235_C	255_L	0.676	1.00
111_G	129_T	0.674	1.00
361_A	365_L	0.673	1.00
397_I	404_L	0.673	1.00
97_P	325_C	0.673	1.00
177_A	180_N	0.672	1.00
73_A	89_G	0.672	1.00
208_S	295_W	0.671	1.00
105_Q	343_L	0.669	1.00
123_L	126_E	0.669	1.00
79_A	364_K	0.669	1.00
98_V	346_Y	0.666	1.00
398_M	405_L	0.666	1.00
291_A	318_A	0.664	1.00
399_L	405_L	0.663	1.00
137_G	288_Q	0.663	1.00
378_G	387_M	0.663	1.00
315_P	318_A	0.662	1.00
127_L	331_L	0.661	1.00
389_G	397_I	0.656	1.00
310_S	313_H	0.652	1.00
60_A	64_R	0.649	1.00
91_L	354_I	0.647	1.00
79_A	365_L	0.647	1.00
43_W	46_P	0.645	1.00
185_G	188_A	0.644	1.00
42_L	233_W	0.642	1.00
19_T	152_A	0.640	1.00
80_F	361_A	0.637	1.00
401_G	404_L	0.637	1.00
101_P	343_L	0.635	1.00
163_W	235_C	0.633	1.00
56_A	200_L	0.633	1.00
298_A	306_L	0.633	1.00
379_L	382_V	0.631	1.00
52_V	200_L	0.631	1.00
385_L	393_L	0.631	1.00
95_V	351_F	0.631	1.00
367_Q	371_R	0.630	1.00
227_L	231_V	0.630	1.00
368_G	371_R	0.630	1.00
103_A	106_I	0.630	1.00
305_Y	321_A	0.630	1.00
176_P	180_N	0.628	1.00
141_A	206_L	0.626	1.00
204_A	221_L	0.626	1.00
101_P	329_S	0.624	1.00
145_A	284_N	0.624	1.00
113_A	272_C	0.624	1.00
389_G	396_L	0.623	1.00
178_P	246_G	0.622	1.00
377_G	383_L	0.622	1.00
59_F	358_C	0.622	1.00
30_P	236_T	0.619	1.00
42_L	46_P	0.619	1.00
395_A	406_L	0.618	1.00
306_L	318_A	0.618	1.00
167_D	172_N	0.618	1.00
143_S	146_N	0.618	1.00
395_A	405_L	0.618	1.00
63_G	217_F	0.616	1.00
393_L	403_W	0.612	1.00
39_N	240_L	0.611	1.00
373_L	381_C	0.611	1.00
140_G	143_S	0.609	1.00
294_V	321_A	0.608	1.00
138_T	319_L	0.608	1.00
14_I	17_L	0.607	1.00
339_N	342_A	0.607	1.00
389_G	399_L	0.606	1.00
129_T	283_L	0.604	1.00
131_A	134_W	0.603	1.00
391_K	404_L	0.602	1.00
381_C	387_M	0.599	1.00
373_L	387_M	0.598	1.00
112_Q	116_G	0.597	1.00
96_I	286_Y	0.595	1.00
134_W	287_I	0.595	1.00
108_A	111_G	0.595	1.00
157_A	160_V	0.595	1.00
375_V	380_L	0.595	1.00
389_G	395_A	0.594	1.00
259_V	267_A	0.594	1.00
47_V	190_L	0.594	1.00
209_E	309_L	0.592	1.00
130_L	327_V	0.592	1.00
23_G	232_Y	0.591	1.00
63_G	204_A	0.590	1.00
400_A	403_W	0.589	1.00
374_A	387_M	0.589	1.00
375_V	385_L	0.588	1.00
392_S	407_P	0.588	1.00
382_V	385_L	0.588	1.00
45_W	196_C	0.588	1.00
373_L	376_V	0.586	1.00
223_I	226_L	0.586	1.00
350_I	354_I	0.585	1.00
394_Y	399_L	0.585	1.00
235_C	239_V	0.585	1.00
254_S	259_V	0.585	1.00
278_A	281_A	0.585	1.00
312_R	316_N	0.584	1.00
18_S	21_L	0.584	1.00
7_E	11_A	0.582	1.00
375_V	378_G	0.580	1.00
110_F	275_G	0.580	1.00
48_L	194_F	0.579	1.00
20_S	285_I	0.579	1.00
20_S	286_Y	0.578	1.00
389_G	393_L	0.578	1.00
99_G	102_A	0.577	1.00
376_V	380_L	0.575	1.00
72_V	201_E	0.573	1.00
114_M	272_C	0.573	1.00
377_G	385_L	0.570	1.00
154_L	158_L	0.570	1.00
397_I	405_L	0.569	1.00
91_L	353_M	0.566	1.00
22_L	231_V	0.565	1.00
62_L	79_A	0.565	1.00
359_M	378_G	0.564	1.00
198_V	201_E	0.562	1.00
165_A	263_F	0.561	1.00
273_V	277_L	0.561	1.00
246_G	250_A	0.560	1.00
213_P	216_D	0.559	1.00
389_G	406_L	0.559	1.00
399_L	402_L	0.556	1.00
72_V	205_H	0.556	1.00
32_L	341_D	0.556	1.00
394_Y	403_W	0.554	1.00
114_M	273_V	0.554	1.00
104_L	108_A	0.553	1.00
209_E	315_P	0.553	1.00
144_S	288_Q	0.553	1.00
152_A	155_I	0.552	1.00
11_A	14_I	0.552	1.00
13_G	206_L	0.550	1.00
400_A	405_L	0.549	1.00
205_H	289_S	0.549	1.00
26_V	30_P	0.548	1.00
217_F	221_L	0.545	1.00
215_R	218_P	0.545	1.00
328_V	331_L	0.545	1.00
22_L	27_F	0.545	1.00
290_F	294_V	0.545	1.00
341_D	344_I	0.545	1.00
54_P	373_L	0.544	1.00
173_I	240_L	0.543	1.00
26_V	29_V	0.543	1.00
18_S	152_A	0.541	1.00
395_A	400_A	0.539	1.00
380_L	387_M	0.539	1.00
292_R	309_L	0.538	1.00
340_L	344_I	0.537	1.00
393_L	408_K	0.536	1.00
373_L	380_L	0.536	1.00
56_A	60_A	0.536	1.00
149_T	153_G	0.535	1.00
81_G	85_E	0.535	1.00
321_A	325_C	0.535	1.00
227_L	230_L	0.534	1.00
143_S	147_L	0.534	1.00
29_V	344_I	0.533	1.00
375_V	381_C	0.533	1.00
253_A	256_P	0.533	1.00
174_P	180_N	0.532	1.00
97_P	322_V	0.532	1.00
71_G	204_A	0.531	1.00
110_F	256_P	0.530	1.00
375_V	387_M	0.530	1.00
196_C	232_Y	0.528	1.00
399_L	407_P	0.527	1.00
99_G	103_A	0.527	1.00
73_A	85_E	0.526	1.00
55_I	201_E	0.525	1.00
396_L	402_L	0.525	1.00
391_K	398_M	0.525	1.00
148_Q	155_I	0.524	1.00
103_A	283_L	0.524	1.00
292_R	315_P	0.524	1.00
97_P	329_S	0.523	1.00
113_A	116_G	0.522	1.00
150_V	153_G	0.520	1.00
6_Q	211_K	0.519	1.00
101_P	326_C	0.518	1.00
394_Y	407_P	0.518	1.00
210_F	220_A	0.517	1.00
154_L	274_I	0.516	1.00
395_A	404_L	0.516	1.00
259_V	264_G	0.515	1.00
36_V	188_A	0.513	1.00
132_L	136_I	0.512	1.00
404_L	407_P	0.512	1.00
287_I	319_L	0.511	1.00
139_R	312_R	0.511	1.00
20_S	202_A	0.510	1.00
9_G	142_S	0.510	1.00
174_P	179_G	0.509	1.00
39_N	245_Y	0.507	1.00
395_A	401_G	0.507	1.00
393_L	405_L	0.505	1.00
104_L	107_A	0.504	1.00
128_G	131_A	0.504	1.00
316_N	319_L	0.503	1.00
173_I	241_H	0.503	1.00
45_W	236_T	0.503	1.00
109_G	122_L	0.502	1.00
391_K	403_W	0.502	1.00
17_L	21_L	0.502	1.00
227_L	234_G	0.501	1.00
239_V	255_L	0.501	1.00
48_L	197_F	0.500	1.00
60_A	221_L	0.500	1.00
210_F	217_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.9641	100	0.248	Contact Map
3giaA	1	0.9785	100	0.319	Contact Map
4djkA	2	0.933	100	0.352	Contact Map
3dh4A	3	0.9545	98.8	0.855	Contact Map
2xq2A	2	0.9545	98.7	0.859	Contact Map
2jlnA	1	0.9402	98.5	0.867	Contact Map
4wgvA	2	0.8565	98.2	0.88	Contact Map
2a65A	2	0.9569	96.5	0.91	Contact Map
4us3A	1	0.9139	95.1	0.919	Contact Map
4xp4A	1	0.9593	95	0.92	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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