YJDL - ECOLI - GREMLIN Contacts

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YJDL - Probable dipeptide and tripeptide permease YjdL

UniProt:	P39276	Sequences: MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIAGALLMTLGHVVLGIDTNSTFSLYLALAIIICGYGLFKSNISCLLGELYDENDHRRDGGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGGGMFIGLLIFLSGHRHFQSTRSMDKKALTSVKFALPVWSWLVVMLCLAPVFFTLLLENDWSGYLLAIVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQAFNIEVPTALFQSVNAIAVMLAGVVLAWLASPESRGNSTLRVWLKFAFGLLLMACGFMLLAFDARHAAADGQASMGVMISGLALMGFAELFIDPVAIAQITRLKMSGVLTGIYMLATGAVANWLAGVVAQQTTESQISGMAIAAYQRFFSQMGEWTLACVAIIVVLAFATRFLFSTPTNMIQESND	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12469
Length:	485 (459)
Sequences:	4666 (2912)
Seq/√Len:	135.9

ECOLI - YJDL DTPD DTPB DTPA
BACSU - YCLF

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
160_A	172_L	4.442	1.00
358_L	383_L	3.486	1.00
67_L	72_L	3.435	1.00
277_F	387_A	3.377	1.00
310_F	374_M	3.338	1.00
72_L	77_A	3.310	1.00
43_D	294_R	3.145	1.00
87_L	108_I	3.121	1.00
347_F	390_F	3.047	1.00
298_R	304_E	2.976	1.00
453_E	457_A	2.945	1.00
317_A	382_A	2.719	1.00
33_L	289_S	2.646	1.00
91_V	105_A	2.644	1.00
67_L	71_L	2.625	1.00
395_A	412_Y	2.593	1.00
81_G	115_L	2.584	1.00
72_L	80_A	2.570	1.00
86_T	178_F	2.557	1.00
91_V	108_I	2.513	1.00
299_Q	304_E	2.487	1.00
161_A	308_A	2.483	1.00
378_I	382_A	2.454	1.00
23_S	89_H	2.426	1.00
351_L	386_F	2.409	1.00
195_R	200_K	2.406	1.00
17_Q	21_Y	2.369	1.00
448_F	451_M	2.327	1.00
292_I	377_M	2.319	1.00
235_S	238_L	2.299	1.00
340_R	343_L	2.286	1.00
92_L	105_A	2.277	1.00
83_L	87_L	2.236	1.00
75_R	188_H	2.214	1.00
350_L	459_V	2.200	1.00
162_Q	307_T	2.178	1.00
20_E	117_K	2.155	1.00
231_E	239_L	2.137	1.00
278_W	392_D	2.115	1.00
79_I	185_L	2.090	1.00
324_V	328_L	2.067	1.00
239_L	243_C	2.052	1.00
50_F	285_G	2.041	1.00
313_V	378_I	2.041	1.00
324_V	327_W	2.039	1.00
358_L	379_S	2.033	1.00
24_F	54_A	2.025	1.00
93_G	174_G	2.014	1.00
328_L	332_E	1.994	1.00
321_A	386_F	1.992	1.00
50_F	286_S	1.980	1.00
17_Q	20_E	1.978	1.00
61_P	68_A	1.972	1.00
258_P	262_R	1.968	1.00
139_F	400_T	1.968	1.00
213_S	217_V	1.966	1.00
32_I	36_T	1.919	1.00
60_T	63_L	1.878	1.00
43_D	290_L	1.847	1.00
365_H	368_A	1.845	1.00
124_L	138_G	1.791	1.00
203_T	206_K	1.768	1.00
239_L	242_V	1.755	1.00
17_Q	117_K	1.729	1.00
100_F	104_L	1.719	1.00
85_M	116_F	1.699	1.00
37_H	166_W	1.689	1.00
41_F	49_L	1.683	1.00
320_L	324_V	1.671	1.00
88_G	109_I	1.666	1.00
144_A	319_M	1.661	1.00
314_N	385_G	1.660	1.00
467_F	471_F	1.641	1.00
188_H	193_S	1.630	1.00
207_F	211_V	1.601	1.00
210_P	214_W	1.601	1.00
205_V	208_A	1.598	1.00
350_L	354_C	1.590	1.00
199_K	202_L	1.584	1.00
251_A	264_L	1.569	1.00
32_I	290_L	1.567	1.00
460_A	464_V	1.534	1.00
60_T	110_I	1.533	1.00
33_L	307_T	1.527	1.00
372_A	376_V	1.526	1.00
208_A	212_W	1.523	1.00
90_V	174_G	1.522	1.00
151_I	319_M	1.494	1.00
276_L	458_C	1.489	1.00
450_Q	454_W	1.485	1.00
121_S	413_M	1.484	1.00
42_D	45_H	1.479	1.00
355_G	384_M	1.479	1.00
262_R	474_S	1.474	1.00
461_I	465_L	1.473	1.00
142_L	146_G	1.463	1.00
231_E	242_V	1.458	1.00
314_N	318_V	1.457	1.00
165_G	168_V	1.456	1.00
306_P	309_L	1.449	1.00
205_V	209_L	1.441	1.00
158_G	308_A	1.441	1.00
298_R	307_T	1.438	1.00
224_V	227_T	1.437	1.00
223_P	227_T	1.426	1.00
360_A	454_W	1.415	1.00
18_I	145_A	1.412	1.00
364_R	368_A	1.409	1.00
274_G	415_A	1.403	1.00
449_S	453_E	1.395	1.00
192_Q	195_R	1.390	1.00
279_V	420_A	1.389	1.00
35_L	50_F	1.385	1.00
105_A	109_I	1.384	1.00
464_V	468_A	1.382	1.00
363_A	366_A	1.376	1.00
36_T	290_L	1.375	1.00
240_A	243_C	1.372	1.00
206_K	210_P	1.364	1.00
468_A	471_F	1.353	1.00
211_V	215_L	1.349	1.00
360_A	449_S	1.348	1.00
210_P	213_S	1.345	1.00
354_C	383_L	1.344	1.00
80_A	83_L	1.339	1.00
234_W	238_L	1.333	1.00
160_A	164_Y	1.320	1.00
231_E	235_S	1.319	1.00
468_A	472_L	1.313	1.00
331_P	335_G	1.311	1.00
168_V	171_A	1.305	1.00
317_A	385_G	1.300	1.00
346_A	459_V	1.296	1.00
144_A	322_G	1.294	1.00
88_G	112_G	1.293	1.00
236_G	239_L	1.292	1.00
99_T	103_Y	1.289	1.00
281_A	284_G	1.282	1.00
195_R	198_D	1.282	1.00
86_T	90_V	1.275	1.00
467_F	470_R	1.275	1.00
456_L	460_A	1.270	1.00
48_S	429_Q	1.268	1.00
18_I	148_I	1.268	1.00
292_I	374_M	1.259	1.00
466_A	470_R	1.256	1.00
26_G	157_C	1.254	1.00
175_G	179_I	1.252	1.00
235_S	240_A	1.252	1.00
373_S	376_V	1.251	1.00
231_E	243_C	1.247	1.00
392_D	396_I	1.245	1.00
327_W	331_P	1.245	1.00
359_L	380_G	1.243	1.00
12_Y	187_G	1.243	1.00
113_Y	117_K	1.238	1.00
362_D	376_V	1.234	1.00
227_T	231_E	1.224	1.00
209_L	213_S	1.222	1.00
332_E	337_S	1.222	1.00
214_W	217_V	1.221	1.00
231_E	234_W	1.218	1.00
143_Y	388_E	1.217	1.00
21_Y	117_K	1.215	1.00
72_L	76_T	1.213	1.00
236_G	240_A	1.210	1.00
147_N	314_N	1.206	1.00
233_D	236_G	1.206	1.00
295_F	371_Q	1.203	1.00
198_D	202_L	1.194	1.00
299_Q	302_N	1.190	1.00
126_E	400_T	1.187	0.99
32_I	46_A	1.186	0.99
136_D	397_A	1.186	0.99
406_G	410_G	1.185	0.99
206_K	257_F	1.183	0.99
353_A	456_L	1.180	0.99
450_Q	453_E	1.179	0.99
382_A	386_F	1.169	0.99
235_S	241_I	1.166	0.99
351_L	387_A	1.164	0.99
158_G	309_L	1.161	0.99
156_A	172_L	1.159	0.99
237_Y	241_I	1.155	0.99
318_V	388_E	1.152	0.99
121_S	142_L	1.147	0.99
339_L	347_F	1.145	0.99
234_W	240_A	1.145	0.99
303_I	309_L	1.143	0.99
157_C	160_A	1.143	0.99
345_F	391_I	1.138	0.99
159_L	164_Y	1.137	0.99
113_Y	116_F	1.136	0.99
34_Y	102_L	1.136	0.99
57_V	60_T	1.133	0.99
64_G	114_G	1.130	0.99
236_G	243_C	1.128	0.99
431_T	455_T	1.124	0.99
74_N	126_E	1.124	0.99
256_K	260_H	1.120	0.99
206_K	211_V	1.114	0.99
201_A	205_V	1.109	0.99
182_L	186_S	1.108	0.99
207_F	258_P	1.108	0.99
117_K	413_M	1.106	0.99
231_E	236_G	1.105	0.99
288_I	380_G	1.104	0.99
86_T	181_L	1.097	0.99
17_Q	142_L	1.090	0.99
128_Y	138_G	1.086	0.99
57_V	110_I	1.085	0.99
19_W	176_G	1.084	0.99
20_E	25_Y	1.084	0.99
171_A	175_G	1.083	0.99
196_S	199_K	1.081	0.99
146_G	413_M	1.081	0.99
21_Y	24_F	1.078	0.99
353_A	357_M	1.068	0.99
35_L	102_L	1.068	0.99
229_L	243_C	1.065	0.99
286_S	428_A	1.065	0.99
88_G	92_L	1.064	0.99
41_F	99_T	1.063	0.99
235_S	239_L	1.063	0.99
288_I	381_L	1.051	0.99
41_F	45_H	1.046	0.99
28_R	50_F	1.046	0.99
311_Q	315_A	1.038	0.99
150_S	315_A	1.034	0.99
121_S	409_T	1.033	0.99
146_G	396_I	1.025	0.99
143_Y	318_V	1.025	0.99
231_E	240_A	1.021	0.98
207_F	210_P	1.021	0.98
357_M	452_G	1.020	0.98
155_I	309_L	1.019	0.98
208_A	211_V	1.016	0.98
354_C	358_L	1.015	0.98
65_G	406_G	1.015	0.98
333_S	338_T	1.013	0.98
202_L	206_K	1.006	0.98
298_R	306_P	1.005	0.98
186_S	189_R	1.005	0.98
124_L	127_L	1.005	0.98
259_E	262_R	1.005	0.98
193_S	196_S	1.003	0.98
21_Y	25_Y	1.001	0.98
226_F	229_L	0.998	0.98
37_H	162_Q	0.997	0.98
250_I	253_M	0.996	0.98
45_H	48_S	0.995	0.98
125_G	400_T	0.994	0.98
348_G	391_I	0.994	0.98
333_S	336_N	0.993	0.98
85_M	113_Y	0.987	0.98
67_L	77_A	0.986	0.98
292_I	296_V	0.977	0.98
17_Q	116_F	0.976	0.98
223_P	226_F	0.974	0.98
198_D	201_A	0.973	0.98
253_M	257_F	0.970	0.98
171_A	174_G	0.969	0.98
206_K	209_L	0.966	0.98
19_W	120_I	0.964	0.98
346_A	463_V	0.963	0.98
217_V	243_C	0.961	0.98
318_V	323_V	0.961	0.98
229_L	232_N	0.958	0.98
201_A	204_S	0.957	0.98
48_S	425_G	0.957	0.98
297_N	371_Q	0.956	0.98
65_G	410_G	0.952	0.98
281_A	385_G	0.951	0.98
232_N	243_C	0.951	0.98
28_R	282_Q	0.950	0.98
465_L	469_T	0.946	0.98
58_Y	117_K	0.942	0.97
284_G	388_E	0.942	0.97
361_F	365_H	0.941	0.97
284_G	384_M	0.940	0.97
79_I	82_A	0.940	0.97
143_Y	147_N	0.940	0.97
221_L	224_V	0.939	0.97
238_L	243_C	0.936	0.97
206_K	250_I	0.936	0.97
60_T	114_G	0.934	0.97
238_L	241_I	0.930	0.97
392_D	412_Y	0.925	0.97
392_D	395_A	0.923	0.97
198_D	204_S	0.918	0.97
322_G	393_P	0.918	0.97
322_G	326_A	0.914	0.97
277_F	318_V	0.913	0.97
51_S	424_A	0.912	0.97
221_L	226_F	0.909	0.97
47_I	286_S	0.907	0.97
198_D	214_W	0.906	0.97
325_L	328_L	0.898	0.97
317_A	378_I	0.898	0.97
121_S	396_I	0.895	0.97
284_G	381_L	0.892	0.96
6_Q	10_I	0.890	0.96
195_R	199_K	0.889	0.96
234_W	237_Y	0.889	0.96
200_K	206_K	0.888	0.96
430_Q	434_S	0.887	0.96
58_Y	413_M	0.885	0.96
204_S	207_F	0.881	0.96
49_L	103_Y	0.877	0.96
237_Y	242_V	0.876	0.96
42_D	46_A	0.874	0.96
270_L	345_F	0.872	0.96
97_N	101_S	0.872	0.96
228_L	231_E	0.869	0.96
274_G	412_Y	0.865	0.96
332_E	339_L	0.858	0.96
353_A	459_V	0.856	0.96
159_L	163_W	0.849	0.95
225_F	228_L	0.844	0.95
14_V	145_A	0.841	0.95
36_T	43_D	0.833	0.95
362_D	372_A	0.828	0.95
33_L	37_H	0.827	0.95
20_E	177_M	0.827	0.95
66_W	71_L	0.827	0.95
226_F	231_E	0.827	0.95
137_G	326_A	0.824	0.94
237_Y	243_C	0.823	0.94
18_I	146_G	0.822	0.94
84_L	111_C	0.822	0.94
426_V	430_Q	0.820	0.94
280_L	455_T	0.814	0.94
56_L	422_W	0.814	0.94
364_R	450_Q	0.812	0.94
62_I	410_G	0.811	0.94
19_W	22_F	0.809	0.94
325_L	386_F	0.807	0.94
116_F	120_I	0.803	0.94
321_A	389_L	0.803	0.94
129_D	192_Q	0.802	0.94
281_A	392_D	0.802	0.94
345_F	395_A	0.801	0.94
446_R	449_S	0.800	0.94
291_F	296_V	0.800	0.94
305_V	374_M	0.799	0.94
167_H	171_A	0.798	0.93
199_K	207_F	0.797	0.93
152_A	155_I	0.794	0.93
330_S	333_S	0.793	0.93
282_Q	416_T	0.792	0.93
259_E	474_S	0.791	0.93
296_V	377_M	0.791	0.93
321_A	324_V	0.790	0.93
87_L	91_V	0.789	0.93
192_Q	196_S	0.789	0.93
305_V	309_L	0.787	0.93
335_G	338_T	0.787	0.93
227_T	230_L	0.786	0.93
197_M	201_A	0.785	0.93
233_D	238_L	0.784	0.93
230_L	240_A	0.783	0.93
452_G	455_T	0.782	0.93
388_E	392_D	0.782	0.93
142_L	388_E	0.781	0.93
32_I	47_I	0.780	0.93
423_L	426_V	0.775	0.92
142_L	396_I	0.774	0.92
281_A	314_N	0.774	0.92
280_L	352_M	0.771	0.92
237_Y	240_A	0.766	0.92
251_A	255_I	0.765	0.92
211_V	258_P	0.764	0.92
358_L	380_G	0.757	0.92
20_E	283_Q	0.755	0.91
121_S	146_G	0.754	0.91
363_A	367_A	0.754	0.91
162_Q	308_A	0.753	0.91
207_F	213_S	0.752	0.91
12_Y	190_H	0.750	0.91
298_R	374_M	0.750	0.91
77_A	115_L	0.747	0.91
275_T	420_A	0.745	0.91
202_L	211_V	0.744	0.91
343_L	346_A	0.743	0.91
282_Q	421_N	0.743	0.91
125_G	139_F	0.743	0.91
271_M	399_I	0.740	0.91
273_V	466_A	0.738	0.91
161_A	165_G	0.738	0.91
57_V	119_N	0.738	0.91
126_E	405_S	0.738	0.91
225_F	231_E	0.737	0.90
431_T	435_Q	0.736	0.90
226_F	230_L	0.733	0.90
184_F	188_H	0.733	0.90
321_A	382_A	0.732	0.90
17_Q	146_G	0.732	0.90
201_A	207_F	0.729	0.90
20_E	24_F	0.729	0.90
41_F	103_Y	0.728	0.90
79_I	181_L	0.728	0.90
277_F	391_I	0.728	0.90
279_V	423_L	0.727	0.90
253_M	256_K	0.725	0.90
452_G	456_L	0.724	0.90
222_A	225_F	0.723	0.90
79_I	83_L	0.722	0.90
331_P	334_R	0.721	0.89
291_F	377_M	0.721	0.89
222_A	226_F	0.719	0.89
227_T	232_N	0.719	0.89
208_A	223_P	0.718	0.89
47_I	290_L	0.718	0.89
232_N	236_G	0.715	0.89
397_A	401_R	0.715	0.89
89_H	177_M	0.714	0.89
93_G	171_A	0.714	0.89
343_L	463_V	0.713	0.89
230_L	235_S	0.711	0.89
446_R	453_E	0.709	0.89
285_G	289_S	0.709	0.89
229_L	239_L	0.709	0.89
154_P	312_S	0.708	0.89
329_A	338_T	0.707	0.89
194_T	200_K	0.707	0.89
314_N	388_E	0.706	0.89
54_A	57_V	0.703	0.88
327_W	330_S	0.702	0.88
69_D	73_G	0.702	0.88
351_L	383_L	0.698	0.88
250_I	264_L	0.698	0.88
55_S	422_W	0.697	0.88
420_A	423_L	0.697	0.88
86_T	174_G	0.697	0.88
332_E	335_G	0.697	0.88
158_G	161_A	0.696	0.88
280_L	384_M	0.694	0.88
367_A	450_Q	0.692	0.88
273_V	462_I	0.692	0.88
233_D	243_C	0.691	0.87
122_C	409_T	0.690	0.87
29_A	154_P	0.687	0.87
30_L	169_G	0.686	0.87
232_N	239_L	0.685	0.87
21_Y	146_G	0.683	0.87
33_L	36_T	0.682	0.87
218_M	221_L	0.682	0.87
141_L	144_A	0.680	0.87
151_I	315_A	0.680	0.87
89_H	174_G	0.678	0.86
34_Y	326_A	0.678	0.86
446_R	450_Q	0.677	0.86
296_V	374_M	0.675	0.86
221_L	225_F	0.674	0.86
211_V	214_W	0.674	0.86
279_V	427_V	0.673	0.86
90_V	94_I	0.671	0.86
230_L	234_W	0.671	0.86
357_M	360_A	0.669	0.86
199_K	214_W	0.668	0.86
161_A	166_W	0.668	0.86
63_L	420_A	0.668	0.86
7_P	10_I	0.667	0.86
156_A	159_L	0.666	0.85
235_S	243_C	0.666	0.85
447_F	451_M	0.665	0.85
14_V	18_I	0.665	0.85
6_Q	9_A	0.665	0.85
76_T	80_A	0.664	0.85
64_G	128_Y	0.664	0.85
197_M	200_K	0.664	0.85
234_W	242_V	0.662	0.85
147_N	315_A	0.661	0.85
58_Y	147_N	0.660	0.85
346_A	350_L	0.657	0.85
229_L	236_G	0.657	0.85
205_V	212_W	0.656	0.85
360_A	364_R	0.656	0.85
119_N	173_A	0.655	0.85
182_L	225_F	0.654	0.84
232_N	240_A	0.654	0.84
362_D	380_G	0.654	0.84
305_V	368_A	0.652	0.84
8_R	11_Y	0.652	0.84
193_S	200_K	0.650	0.84
357_M	457_A	0.649	0.84
369_D	372_A	0.648	0.84
359_L	362_D	0.644	0.84
206_K	213_S	0.644	0.84
231_E	238_L	0.643	0.83
118_S	122_C	0.637	0.83
212_W	215_L	0.636	0.83
24_F	117_K	0.636	0.83
203_T	210_P	0.636	0.83
313_V	317_A	0.632	0.82
30_L	35_L	0.631	0.82
208_A	214_W	0.630	0.82
207_F	214_W	0.630	0.82
120_I	123_L	0.629	0.82
155_I	312_S	0.628	0.82
254_M	257_F	0.625	0.82
200_K	207_F	0.624	0.82
248_Q	251_A	0.623	0.81
284_G	314_N	0.622	0.81
47_I	431_T	0.622	0.81
224_V	228_L	0.620	0.81
23_S	113_Y	0.617	0.81
230_L	233_D	0.616	0.81
276_L	279_V	0.616	0.81
93_G	181_L	0.616	0.81
234_W	239_L	0.616	0.81
210_P	218_M	0.615	0.81
360_A	363_A	0.614	0.81
352_M	355_G	0.614	0.81
277_F	314_N	0.614	0.81
361_F	364_R	0.613	0.80
270_L	398_Q	0.612	0.80
204_S	261_R	0.611	0.80
230_L	238_L	0.611	0.80
250_I	254_M	0.609	0.80
147_N	388_E	0.608	0.80
148_I	318_V	0.608	0.80
278_W	281_A	0.607	0.80
260_H	403_K	0.607	0.80
185_L	188_H	0.607	0.80
23_S	27_M	0.607	0.80
221_L	231_E	0.607	0.80
21_Y	26_G	0.606	0.80
192_Q	199_K	0.606	0.80
159_L	308_A	0.604	0.79
121_S	392_D	0.604	0.79
245_I	248_Q	0.603	0.79
459_V	462_I	0.602	0.79
192_Q	198_D	0.601	0.79
233_D	239_L	0.601	0.79
424_A	452_G	0.601	0.79
143_Y	314_N	0.601	0.79
71_L	92_L	0.601	0.79
199_K	203_T	0.599	0.79
48_S	52_A	0.598	0.79
140_S	326_A	0.597	0.79
86_T	144_A	0.595	0.78
35_L	39_L	0.595	0.78
325_L	389_L	0.593	0.78
144_A	148_I	0.593	0.78
51_S	425_G	0.592	0.78
143_Y	311_Q	0.592	0.78
151_I	316_I	0.591	0.78
348_G	387_A	0.591	0.78
82_A	177_M	0.590	0.78
116_F	119_N	0.590	0.78
96_T	99_T	0.589	0.78
126_E	194_T	0.589	0.78
147_N	150_S	0.588	0.78
164_Y	306_P	0.587	0.77
17_Q	26_G	0.587	0.77
238_L	242_V	0.586	0.77
229_L	234_W	0.586	0.77
179_I	221_L	0.584	0.77
119_N	406_G	0.584	0.77
12_Y	183_I	0.584	0.77
471_F	474_S	0.583	0.77
120_I	146_G	0.583	0.77
217_V	221_L	0.582	0.77
168_V	173_A	0.582	0.77
111_C	196_S	0.581	0.77
196_S	204_S	0.580	0.77
232_N	238_L	0.580	0.77
469_T	473_F	0.580	0.77
56_L	110_I	0.580	0.77
211_V	237_Y	0.580	0.77
78_V	406_G	0.579	0.77
403_K	410_G	0.579	0.77
236_G	241_I	0.578	0.76
203_T	213_S	0.577	0.76
183_I	191_F	0.576	0.76
305_V	382_A	0.575	0.76
25_Y	153_A	0.574	0.76
207_F	261_R	0.574	0.76
11_Y	15_A	0.574	0.76
147_N	392_D	0.574	0.76
426_V	429_Q	0.573	0.76
398_Q	474_S	0.573	0.76
314_N	384_M	0.571	0.76
48_S	51_S	0.570	0.75
30_L	43_D	0.570	0.75
235_S	242_V	0.569	0.75
139_F	270_L	0.568	0.75
78_V	184_F	0.568	0.75
68_A	73_G	0.568	0.75
246_A	407_V	0.568	0.75
196_S	200_K	0.567	0.75
95_D	98_S	0.565	0.75
298_R	310_F	0.565	0.75
214_W	252_R	0.564	0.75
283_Q	356_F	0.563	0.75
32_I	289_S	0.562	0.74
342_W	402_L	0.561	0.74
21_Y	113_Y	0.561	0.74
85_M	109_I	0.560	0.74
187_G	190_H	0.559	0.74
284_G	355_G	0.559	0.74
354_C	357_M	0.558	0.74
209_L	214_W	0.558	0.74
289_S	311_Q	0.558	0.74
224_V	233_D	0.557	0.74
224_V	231_E	0.557	0.74
452_G	459_V	0.554	0.73
109_I	114_G	0.551	0.73
234_W	243_C	0.551	0.73
388_E	395_A	0.550	0.73
431_T	447_F	0.549	0.73
8_R	190_H	0.548	0.73
26_G	73_G	0.548	0.73
343_L	470_R	0.547	0.72
276_L	387_A	0.547	0.72
59_V	421_N	0.547	0.72
195_R	202_L	0.546	0.72
53_Y	57_V	0.545	0.72
430_Q	433_E	0.545	0.72
144_A	323_V	0.545	0.72
80_A	185_L	0.544	0.72
449_S	452_G	0.544	0.72
85_M	89_H	0.543	0.72
283_Q	287_T	0.543	0.72
19_W	23_S	0.543	0.72
156_A	160_A	0.542	0.72
62_I	66_W	0.542	0.72
289_S	381_L	0.542	0.72
214_W	218_M	0.540	0.71
153_A	424_A	0.540	0.71
303_I	306_P	0.540	0.71
194_T	204_S	0.539	0.71
459_V	463_V	0.538	0.71
463_V	467_F	0.538	0.71
348_G	352_M	0.538	0.71
166_W	170_F	0.536	0.71
64_G	153_A	0.535	0.71
199_K	204_S	0.534	0.71
227_T	243_C	0.534	0.71
267_I	452_G	0.533	0.70
248_Q	252_R	0.533	0.70
21_Y	177_M	0.532	0.70
116_F	121_S	0.532	0.70
24_F	28_R	0.531	0.70
116_F	142_L	0.531	0.70
58_Y	314_N	0.531	0.70
143_Y	146_G	0.530	0.70
20_E	26_G	0.530	0.70
281_A	318_V	0.529	0.70
138_G	400_T	0.527	0.70
291_F	363_A	0.527	0.70
146_G	152_A	0.525	0.69
278_W	388_E	0.523	0.69
17_Q	25_Y	0.523	0.69
350_L	460_A	0.523	0.69
117_K	146_G	0.522	0.69
232_N	235_S	0.521	0.69
21_Y	142_L	0.520	0.69
350_L	463_V	0.519	0.68
16_I	116_F	0.518	0.68
267_I	399_I	0.518	0.68
230_L	236_G	0.516	0.68
241_I	250_I	0.515	0.68
9_A	12_Y	0.514	0.68
244_L	248_Q	0.514	0.68
161_A	164_Y	0.513	0.68
194_T	319_M	0.513	0.68
224_V	229_L	0.511	0.67
321_A	351_L	0.510	0.67
41_F	102_L	0.510	0.67
154_P	158_G	0.509	0.67
351_L	390_F	0.509	0.67
341_V	420_A	0.509	0.67
68_A	78_V	0.507	0.67
198_D	207_F	0.507	0.67
162_Q	298_R	0.506	0.67
6_Q	128_Y	0.506	0.67
186_S	259_E	0.505	0.66
201_A	210_P	0.505	0.66
147_N	318_V	0.505	0.66
162_Q	306_P	0.505	0.66
20_E	116_F	0.504	0.66
206_K	221_L	0.504	0.66
232_N	237_Y	0.504	0.66
22_F	155_I	0.502	0.66
405_S	408_L	0.501	0.66
292_I	310_F	0.500	0.66

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4oh3A	2	0.9608	100	0.53	Contact Map
4uvmA	1	0.9629	100	0.537	Contact Map
4q65A	1	0.8907	100	0.59	Contact Map
4tphA	2	0.8928	100	0.634	Contact Map
4ikvA	1	0.9485	100	0.647	Contact Map
4xnjA	1	0.9258	100	0.67	Contact Map
4w6vA	1	0.934	100	0.746	Contact Map
3wdoA	1	0.8227	99.9	0.786	Contact Map
2cfqA	1	0.8351	99.9	0.789	Contact Map
4pypA	1	0.866	99.9	0.797	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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