DEGQ - ECOLI - GREMLIN Contacts

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DEGQ - Periplasmic pH-dependent serine endoprotease DegQ

UniProt:	P39099	Sequences: MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESIYLLMR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12612
Length:	455 (391)
Sequences:	2760 (1914)
Seq/√Len:	96.8

ECOLI - DEGQ DEGP DEGS
BACSU - HTRB HTRA YYXA
HALSA - Q9HSH6
SULSO - Q97VL1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
220_N	224_E	6.945	1.00
47_E	163_R	6.224	1.00
345_L	354_V	5.928	1.00
316_S	344_G	5.832	1.00
98_N	101_K	4.174	1.00
117_I	131_L	4.154	1.00
318_N	335_T	4.009	1.00
158_D	161_K	3.665	1.00
108_N	134_S	3.646	1.00
209_I	243_G	3.598	1.00
344_G	351_P	3.454	1.00
130_K	146_Q	3.308	1.00
155_A	224_E	3.307	1.00
342_K	353_E	3.214	1.00
294_V	308_V	3.183	1.00
162_L	226_I	3.161	1.00
340_K	355_E	3.040	1.00
52_A	153_Q	2.977	1.00
142_L	259_I	2.884	1.00
129_A	143_L	2.872	1.00
424_S	427_E	2.760	1.00
186_V	203_I	2.755	1.00
158_D	249_N	2.707	1.00
160_D	249_N	2.605	1.00
105_L	251_A	2.592	1.00
342_K	355_E	2.573	1.00
95_V	225_L	2.567	1.00
345_L	352_L	2.529	1.00
105_L	255_A	2.445	1.00
340_K	357_T	2.429	1.00
96_I	121_L	2.314	1.00
300_G	304_A	2.309	1.00
316_S	321_P	2.302	1.00
95_V	217_A	2.276	1.00
127_F	145_I	2.248	1.00
217_A	225_L	2.238	1.00
70_E	73_K	2.220	1.00
43_A	163_R	2.206	1.00
308_V	345_L	2.097	1.00
315_T	346_L	2.076	1.00
294_V	314_I	2.058	1.00
59_E	116_K	2.040	1.00
116_K	128_D	2.038	1.00
162_L	186_V	2.029	1.00
316_S	319_G	2.022	1.00
49_V	154_I	2.012	1.00
103_Y	132_I	2.002	1.00
41_S	166_D	2.002	1.00
104_V	145_I	1.981	1.00
299_P	304_A	1.971	1.00
43_A	166_D	1.923	1.00
305_K	359_D	1.911	1.00
46_L	181_A	1.897	1.00
272_K	296_E	1.844	1.00
344_G	353_E	1.843	1.00
269_L	356_V	1.821	1.00
118_S	126_E	1.805	1.00
308_V	343_L	1.799	1.00
97_I	255_A	1.785	1.00
167_F	183_S	1.784	1.00
315_T	351_P	1.777	1.00
71_E	75_F	1.775	1.00
71_E	74_K	1.769	1.00
74_K	77_G	1.730	1.00
154_I	219_L	1.680	1.00
256_Q	260_D	1.678	1.00
308_V	354_V	1.671	1.00
427_E	431_V	1.669	1.00
56_V	119_I	1.658	1.00
156_I	248_S	1.657	1.00
42_L	167_F	1.620	1.00
173_N	178_G	1.612	1.00
130_K	144_Q	1.608	1.00
44_P	163_R	1.602	1.00
154_I	225_L	1.595	1.00
73_K	77_G	1.587	1.00
256_Q	259_I	1.576	1.00
96_I	151_L	1.557	1.00
168_A	186_V	1.547	1.00
100_S	150_K	1.543	1.00
335_T	358_L	1.538	1.00
417_V	428_M	1.535	1.00
252_R	256_Q	1.530	1.00
394_I	408_L	1.527	1.00
72_F	75_F	1.498	1.00
159_S	249_N	1.498	1.00
156_I	252_R	1.489	1.00
265_K	360_T	1.476	1.00
72_F	76_F	1.465	1.00
235_P	240_V	1.456	1.00
211_R	235_P	1.444	1.00
147_N	151_L	1.441	1.00
317_L	335_T	1.434	1.00
317_L	332_I	1.432	1.00
276_M	286_L	1.431	1.00
103_Y	142_L	1.427	1.00
103_Y	259_I	1.424	1.00
52_A	154_I	1.409	0.99
71_E	77_G	1.409	0.99
269_L	358_L	1.378	0.99
315_T	344_G	1.378	0.99
312_D	347_R	1.376	0.99
49_V	219_L	1.373	0.99
271_I	292_A	1.351	0.99
255_A	259_I	1.347	0.99
422_V	427_E	1.324	0.99
71_E	79_D	1.308	0.99
423_N	427_E	1.306	0.99
273_G	325_F	1.304	0.99
417_V	422_V	1.278	0.99
70_E	74_K	1.278	0.99
95_V	228_I	1.274	0.99
290_R	321_P	1.267	0.99
95_V	219_L	1.260	0.99
341_V	358_L	1.249	0.99
228_I	251_A	1.248	0.99
194_L	197_E	1.247	0.99
173_N	231_A	1.238	0.99
302_G	359_D	1.232	0.99
275_E	325_F	1.229	0.99
168_A	226_I	1.227	0.99
45_M	169_V	1.216	0.98
234_A	237_G	1.196	0.98
108_N	112_N	1.189	0.98
103_Y	144_Q	1.178	0.98
101_K	144_Q	1.175	0.98
140_I	228_I	1.174	0.98
133_G	258_L	1.170	0.98
71_E	76_F	1.168	0.98
346_L	351_P	1.166	0.98
169_V	221_L	1.163	0.98
162_L	203_I	1.160	0.98
109_H	214_S	1.160	0.98
112_N	136_D	1.156	0.98
49_V	171_V	1.154	0.98
374_A	383_G	1.148	0.98
267_G	358_L	1.148	0.98
306_A	356_V	1.147	0.98
336_E	339_T	1.146	0.98
104_V	143_L	1.145	0.98
92_G	110_V	1.141	0.98
261_F	265_K	1.138	0.98
42_L	183_S	1.135	0.98
58_V	117_I	1.132	0.98
427_E	430_K	1.130	0.98
102_G	144_Q	1.127	0.98
41_S	44_P	1.125	0.97
109_H	139_D	1.124	0.97
196_L	200_E	1.120	0.97
46_L	50_L	1.113	0.97
162_L	189_L	1.109	0.97
277_S	280_I	1.106	0.97
276_M	289_Q	1.104	0.97
207_A	243_G	1.088	0.97
140_I	246_I	1.087	0.97
430_K	434_A	1.081	0.97
138_S	266_R	1.080	0.97
46_L	171_V	1.070	0.97
268_L	362_T	1.064	0.96
120_Q	126_E	1.061	0.96
335_T	339_T	1.051	0.96
323_N	327_E	1.049	0.96
45_M	219_L	1.044	0.96
254_L	258_L	1.042	0.96
138_S	254_L	1.038	0.96
205_T	218_L	1.021	0.96
177_L	180_T	1.015	0.95
274_T	280_I	1.014	0.95
118_S	128_D	1.014	0.95
257_Q	261_F	1.008	0.95
147_N	150_K	1.005	0.95
420_D	434_A	1.004	0.95
60_G	88_F	1.004	0.95
123_D	127_F	1.001	0.95
187_S	204_Q	0.999	0.95
420_D	431_V	0.999	0.95
164_V	189_L	0.997	0.95
58_V	115_Q	0.995	0.95
422_V	431_V	0.991	0.95
59_E	87_P	0.988	0.95
290_R	323_N	0.984	0.95
263_E	360_T	0.982	0.94
318_N	342_K	0.976	0.94
400_G	404_A	0.975	0.94
38_P	41_S	0.972	0.94
121_L	127_F	0.972	0.94
117_I	143_L	0.966	0.94
56_V	90_G	0.962	0.94
268_L	302_G	0.962	0.94
309_K	347_R	0.961	0.94
61_T	115_Q	0.959	0.94
347_R	352_L	0.959	0.94
95_V	154_I	0.953	0.94
296_E	310_A	0.942	0.93
309_K	348_N	0.936	0.93
199_L	333_A	0.934	0.93
392_I	422_V	0.931	0.93
429_R	433_A	0.921	0.92
55_S	90_G	0.920	0.92
139_D	214_S	0.919	0.92
132_I	144_Q	0.918	0.92
156_I	251_A	0.917	0.92
107_N	110_V	0.913	0.92
274_T	295_S	0.912	0.92
425_I	428_M	0.910	0.92
319_G	342_K	0.910	0.92
280_I	283_A	0.909	0.92
58_V	91_L	0.905	0.92
114_A	117_I	0.901	0.92
320_K	331_R	0.901	0.92
57_R	120_Q	0.886	0.91
35_D	38_P	0.885	0.91
69_P	73_K	0.880	0.91
63_S	85_A	0.878	0.90
52_A	152_T	0.877	0.90
426_A	429_R	0.876	0.90
42_L	46_L	0.876	0.90
390_K	423_N	0.876	0.90
46_L	169_V	0.870	0.90
169_V	183_S	0.862	0.90
94_G	104_V	0.860	0.90
350_K	355_E	0.858	0.89
98_N	144_Q	0.855	0.89
330_S	334_T	0.849	0.89
95_V	167_F	0.847	0.89
293_F	311_G	0.847	0.89
179_Q	219_L	0.844	0.89
108_N	136_D	0.838	0.88
157_A	162_L	0.837	0.88
189_L	203_I	0.837	0.88
422_V	428_M	0.833	0.88
280_I	284_F	0.829	0.88
234_A	239_S	0.827	0.88
431_V	434_A	0.825	0.88
420_D	427_E	0.825	0.88
166_D	220_N	0.823	0.87
428_M	432_L	0.823	0.87
194_L	198_G	0.818	0.87
70_E	75_F	0.817	0.87
175_F	232_I	0.816	0.87
140_I	248_S	0.813	0.87
127_F	147_N	0.813	0.87
297_V	307_G	0.811	0.87
51_P	152_T	0.810	0.87
111_I	134_S	0.804	0.86
251_A	255_A	0.802	0.86
212_G	215_G	0.801	0.86
392_I	424_S	0.801	0.86
107_N	229_N	0.798	0.86
146_Q	149_S	0.797	0.86
267_G	337_P	0.796	0.86
105_L	248_S	0.793	0.85
170_A	229_N	0.793	0.85
156_I	255_A	0.791	0.85
426_A	430_K	0.787	0.85
317_L	341_V	0.787	0.85
391_G	394_I	0.787	0.85
268_L	298_L	0.785	0.85
385_L	389_G	0.785	0.85
272_K	298_L	0.781	0.84
239_S	243_G	0.779	0.84
403_A	407_G	0.776	0.84
140_I	243_G	0.775	0.84
402_P	406_A	0.774	0.84
167_F	177_L	0.770	0.84
181_A	185_I	0.769	0.84
236_G	239_S	0.767	0.83
218_L	245_A	0.766	0.83
98_N	153_Q	0.762	0.83
46_L	167_F	0.760	0.83
111_I	143_L	0.760	0.83
50_L	122_N	0.759	0.83
54_V	104_V	0.759	0.83
186_V	226_I	0.758	0.83
96_I	145_I	0.757	0.83
343_L	354_V	0.755	0.82
55_S	91_L	0.754	0.82
360_T	363_S	0.754	0.82
54_V	94_G	0.753	0.82
157_A	248_S	0.751	0.82
285_N	288_V	0.749	0.82
260_D	263_E	0.748	0.82
61_T	85_A	0.747	0.82
202_F	232_I	0.746	0.82
324_S	327_E	0.744	0.82
131_L	134_S	0.742	0.81
190_G	201_N	0.741	0.81
197_E	200_E	0.740	0.81
272_K	295_S	0.735	0.81
106_T	109_H	0.734	0.81
34_A	37_A	0.733	0.81
82_D	345_L	0.732	0.80
209_I	213_N	0.727	0.80
396_E	410_K	0.727	0.80
83_Q	86_Q	0.726	0.80
210_N	213_N	0.725	0.80
230_T	246_I	0.723	0.80
107_N	214_S	0.720	0.79
193_G	196_L	0.720	0.79
267_G	333_A	0.719	0.79
204_Q	210_N	0.715	0.79
399_K	404_A	0.711	0.79
200_E	225_L	0.711	0.79
109_H	212_G	0.705	0.78
50_L	179_Q	0.705	0.78
297_V	310_A	0.704	0.78
107_N	212_G	0.700	0.77
186_V	430_K	0.697	0.77
305_K	424_S	0.696	0.77
249_N	252_R	0.696	0.77
338_G	354_V	0.695	0.77
139_D	184_G	0.695	0.77
173_N	230_T	0.693	0.77
121_L	125_R	0.693	0.77
248_S	251_A	0.693	0.77
100_S	153_Q	0.692	0.77
304_A	307_G	0.688	0.76
416_G	419_R	0.687	0.76
318_N	355_E	0.682	0.76
257_Q	264_I	0.681	0.75
57_R	91_L	0.680	0.75
59_E	89_E	0.679	0.75
284_F	313_I	0.677	0.75
36_Q	39_L	0.677	0.75
58_V	90_G	0.676	0.75
275_E	324_S	0.675	0.75
327_E	331_R	0.673	0.75
104_V	151_L	0.671	0.74
60_G	115_Q	0.671	0.74
175_F	240_V	0.670	0.74
178_G	217_A	0.668	0.74
95_V	329_R	0.664	0.74
180_T	253_T	0.664	0.74
301_S	304_A	0.663	0.74
161_K	222_N	0.662	0.73
89_E	143_L	0.662	0.73
135_D	266_R	0.660	0.73
273_G	328_L	0.659	0.73
202_F	230_T	0.658	0.73
277_S	281_A	0.656	0.73
273_G	292_A	0.655	0.73
64_Q	85_A	0.653	0.72
49_V	225_L	0.651	0.72
274_T	293_F	0.651	0.72
131_L	143_L	0.651	0.72
109_H	184_G	0.650	0.72
70_E	77_G	0.647	0.72
156_I	225_L	0.646	0.72
45_M	48_K	0.645	0.71
248_S	252_R	0.642	0.71
233_L	239_S	0.642	0.71
200_E	231_A	0.638	0.71
142_L	255_A	0.636	0.70
182_T	188_A	0.636	0.70
279_D	282_K	0.635	0.70
298_L	301_S	0.635	0.70
44_P	47_E	0.634	0.70
316_S	351_P	0.634	0.70
139_D	212_G	0.633	0.70
392_I	425_I	0.631	0.70
385_L	388_G	0.631	0.70
73_K	79_D	0.627	0.69
187_S	210_N	0.627	0.69
163_R	166_D	0.627	0.69
166_D	179_Q	0.627	0.69
158_D	252_R	0.627	0.69
122_N	179_Q	0.625	0.69
109_H	247_P	0.625	0.69
410_K	416_G	0.625	0.69
420_D	430_K	0.624	0.69
106_T	139_D	0.623	0.69
401_S	404_A	0.623	0.69
135_D	138_S	0.622	0.69
232_I	240_V	0.621	0.69
82_D	85_A	0.621	0.69
404_A	410_K	0.621	0.69
286_L	289_Q	0.620	0.69
400_G	403_A	0.619	0.68
156_I	162_L	0.618	0.68
170_A	218_L	0.618	0.68
58_V	88_F	0.616	0.68
198_G	296_E	0.613	0.68
196_L	231_A	0.613	0.68
278_A	282_K	0.612	0.68
428_M	431_V	0.612	0.68
317_L	343_L	0.612	0.68
317_L	331_R	0.611	0.67
385_L	396_E	0.611	0.67
98_N	259_I	0.610	0.67
137_Q	198_G	0.609	0.67
96_I	104_V	0.608	0.67
74_K	79_D	0.607	0.67
177_L	230_T	0.606	0.67
69_P	75_F	0.605	0.67
106_T	184_G	0.604	0.66
100_S	152_T	0.603	0.66
213_N	216_G	0.603	0.66
33_V	37_A	0.603	0.66
424_S	428_M	0.602	0.66
64_Q	77_G	0.600	0.66
254_L	359_D	0.600	0.66
347_R	354_V	0.600	0.66
205_T	208_S	0.599	0.66
64_Q	84_P	0.599	0.66
317_L	328_L	0.599	0.66
62_A	86_Q	0.599	0.66
124_G	201_N	0.597	0.66
32_Q	35_D	0.596	0.65
133_G	262_G	0.595	0.65
200_E	219_L	0.595	0.65
175_F	239_S	0.595	0.65
200_E	250_M	0.594	0.65
305_K	357_T	0.594	0.65
271_I	325_F	0.594	0.65
392_I	428_M	0.594	0.65
202_F	231_A	0.592	0.65
40_P	45_M	0.591	0.65
35_D	222_N	0.590	0.65
407_G	422_V	0.590	0.65
145_I	148_P	0.589	0.65
108_N	185_I	0.589	0.65
318_N	339_T	0.589	0.65
106_T	212_G	0.588	0.64
95_V	200_E	0.587	0.64
205_T	210_N	0.587	0.64
275_E	326_A	0.587	0.64
57_R	126_E	0.587	0.64
102_G	151_L	0.585	0.64
318_N	331_R	0.583	0.64
288_V	346_L	0.582	0.64
97_I	142_L	0.582	0.64
393_K	396_E	0.581	0.64
106_T	141_A	0.580	0.63
343_L	356_V	0.579	0.63
257_Q	260_D	0.579	0.63
55_S	176_G	0.578	0.63
184_G	212_G	0.577	0.63
204_Q	244_F	0.575	0.63
392_I	395_D	0.574	0.63
425_I	429_R	0.574	0.63
165_G	191_R	0.572	0.62
419_R	436_P	0.572	0.62
135_D	191_R	0.571	0.62
33_V	36_Q	0.571	0.62
133_G	142_L	0.570	0.62
170_A	213_N	0.569	0.62
281_A	285_N	0.568	0.62
138_S	250_M	0.568	0.62
430_K	433_A	0.568	0.62
189_L	211_R	0.567	0.62
395_D	406_A	0.567	0.62
92_G	216_G	0.567	0.62
384_Q	387_D	0.566	0.62
188_A	231_A	0.566	0.62
184_G	204_Q	0.565	0.61
403_A	412_D	0.564	0.61
37_A	40_P	0.563	0.61
399_K	436_P	0.563	0.61
346_L	349_G	0.560	0.61
184_G	214_S	0.560	0.61
261_F	264_I	0.555	0.60
108_N	179_Q	0.554	0.60
206_D	210_N	0.553	0.60
56_V	129_A	0.553	0.60
335_T	341_V	0.553	0.60
205_T	245_A	0.553	0.60
273_G	322_L	0.553	0.60
416_G	422_V	0.552	0.60
390_K	421_R	0.552	0.60
139_D	247_P	0.552	0.60
332_I	335_T	0.552	0.60
276_M	290_R	0.551	0.59
309_K	350_K	0.551	0.59
109_H	213_N	0.551	0.59
270_G	307_G	0.551	0.59
211_R	240_V	0.550	0.59
303_S	306_A	0.549	0.59
41_S	163_R	0.549	0.59
171_V	181_A	0.549	0.59
399_K	415_I	0.548	0.59
397_V	404_A	0.548	0.59
70_E	79_D	0.548	0.59
97_I	337_P	0.548	0.59
270_G	302_G	0.547	0.59
41_S	178_G	0.547	0.59
390_K	413_V	0.546	0.59
98_N	337_P	0.545	0.59
189_L	330_S	0.544	0.58
142_L	258_L	0.544	0.58
399_K	410_K	0.544	0.58
109_H	204_Q	0.544	0.58
322_L	327_E	0.543	0.58
199_L	329_R	0.543	0.58
403_A	406_A	0.543	0.58
131_L	341_V	0.541	0.58
416_G	428_M	0.541	0.58
253_T	334_T	0.541	0.58
46_L	189_L	0.540	0.58
55_S	242_I	0.539	0.58
191_R	244_F	0.539	0.58
294_V	354_V	0.539	0.58
384_Q	388_G	0.539	0.58
166_D	239_S	0.537	0.58
395_D	405_Q	0.537	0.58
408_L	412_D	0.537	0.58
250_M	329_R	0.536	0.57
107_N	213_N	0.536	0.57
174_P	210_N	0.535	0.57
421_R	430_K	0.535	0.57
335_T	343_L	0.532	0.57
210_N	214_S	0.532	0.57
176_G	212_G	0.531	0.57
387_D	393_K	0.531	0.57
173_N	217_A	0.530	0.57
173_N	244_F	0.530	0.57
40_P	221_L	0.530	0.57
342_K	352_L	0.529	0.56
385_L	415_I	0.529	0.56
203_I	218_L	0.529	0.56
320_K	423_N	0.527	0.56
264_I	267_G	0.527	0.56
167_F	221_L	0.527	0.56
391_G	413_V	0.527	0.56
267_G	332_I	0.526	0.56
175_F	233_L	0.526	0.56
125_R	149_S	0.526	0.56
239_S	242_I	0.525	0.56
235_P	238_G	0.525	0.56
111_I	274_T	0.525	0.56
386_K	423_N	0.524	0.56
56_V	171_V	0.524	0.56
180_T	191_R	0.524	0.56
343_L	347_R	0.524	0.56
366_A	369_E	0.524	0.56
384_Q	413_V	0.523	0.56
385_L	413_V	0.523	0.56
139_D	215_G	0.522	0.55
207_A	212_G	0.522	0.55
325_F	329_R	0.522	0.55
77_G	80_L	0.521	0.55
33_V	48_K	0.521	0.55
174_P	244_F	0.520	0.55
394_I	407_G	0.520	0.55
117_I	150_K	0.520	0.55
112_N	134_S	0.519	0.55
167_F	225_L	0.519	0.55
399_K	409_Q	0.519	0.55
107_N	139_D	0.519	0.55
390_K	417_V	0.518	0.55
57_R	118_S	0.518	0.55
104_V	310_A	0.518	0.55
345_L	353_E	0.517	0.55
43_A	221_L	0.517	0.55
33_V	38_P	0.516	0.55
237_G	240_V	0.516	0.55
101_K	132_I	0.515	0.54
369_E	373_P	0.515	0.54
164_V	230_T	0.515	0.54
429_R	435_K	0.514	0.54
287_D	351_P	0.514	0.54
201_N	242_I	0.514	0.54
48_K	51_P	0.514	0.54
286_L	346_L	0.513	0.54
37_A	309_K	0.513	0.54
304_A	337_P	0.512	0.54
197_E	317_L	0.512	0.54
35_D	39_L	0.510	0.54
384_Q	421_R	0.509	0.54
232_I	239_S	0.509	0.54
410_K	437_A	0.508	0.53
126_E	346_L	0.508	0.53
385_L	431_V	0.508	0.53
290_R	351_P	0.507	0.53
62_A	340_K	0.507	0.53
292_A	322_L	0.507	0.53
374_A	413_V	0.506	0.53
32_Q	36_Q	0.506	0.53
387_D	428_M	0.506	0.53
215_G	247_P	0.506	0.53
204_Q	212_G	0.506	0.53
107_N	207_A	0.505	0.53
157_A	189_L	0.504	0.53
409_Q	412_D	0.504	0.53
417_V	429_R	0.504	0.53
185_I	241_G	0.502	0.53
254_L	330_S	0.500	0.52

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ky9A	5	0.8725	100	0.323	Contact Map
3pv2A	6	0.8374	100	0.345	Contact Map
4a8cA	5	0.8681	100	0.356	Contact Map
4flnA	5	0.8505	100	0.434	Contact Map
3stjA	6	0.6593	100	0.453	Contact Map
1lcyA	3	0.6374	100	0.522	Contact Map
4ic6A	4	0.6967	100	0.526	Contact Map
3qo6A	5	0.6923	100	0.528	Contact Map
4ri0A	3	0.6703	100	0.534	Contact Map
1te0A	6	0.6923	100	0.534	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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