GREMLIN Database
YBGD - Uncharacterized fimbrial-like protein YbgD
UniProt: P37909 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12359
Length: 188 (165)
Sequences: 3315 (2637)
Seq/√Len: 205.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
127_V161_A3.2271.00
123_T173_T3.0461.00
113_L126_G2.9251.00
114_L139_L2.8891.00
43_E80_N2.8381.00
128_R164_E2.8341.00
130_M162_W2.8321.00
97_V185_L2.8051.00
128_R162_W2.7341.00
75_D156_T2.7331.00
116_N177_V2.5121.00
45_H79_I2.4961.00
163_M177_V2.4591.00
124_G172_V2.4071.00
77_R156_T2.1441.00
109_G112_P2.1321.00
131_D135_G2.1001.00
134_D160_F2.0801.00
121_E176_E1.9811.00
114_L181_A1.9801.00
64_N67_H1.9621.00
127_V179_A1.9581.00
75_D158_N1.9281.00
128_R136_N1.8771.00
138_V141_S1.8431.00
73_A160_F1.7971.00
106_K166_I1.6931.00
45_H77_R1.6871.00
113_L164_E1.6581.00
68_H128_R1.6381.00
71_K162_W1.6351.00
45_H48_D1.5471.00
36_E57_Q1.5371.00
63_I165_Q1.5061.00
118_S121_E1.4991.00
103_S114_L1.4941.00
18_T22_Y1.4691.00
58_V69_S1.4671.00
48_D77_R1.4371.00
68_H162_W1.4281.00
16_L19_A1.4241.00
25_D28_S1.4221.00
102_D184_V1.4181.00
56_G72_V1.4141.00
21_V25_D1.3961.00
102_D140_G1.3901.00
55_L163_M1.3801.00
73_A158_N1.3621.00
74_V129_L1.3521.00
51_K76_I1.3521.00
99_V157_L1.3441.00
112_P138_V1.3391.00
63_I172_V1.3301.00
98_G186_D1.3101.00
48_D51_K1.2731.00
113_L128_R1.2641.00
56_G70_N1.2481.00
14_S17_F1.1931.00
103_S106_K1.1871.00
55_L177_V1.1791.00
68_H130_M1.1511.00
96_K147_D1.1461.00
32_H180_N1.1421.00
132_K158_N1.1411.00
15_L18_T1.1191.00
68_H164_E1.1061.00
97_V155_Q1.0921.00
56_G177_V1.0911.00
62_H69_S1.0871.00
165_Q172_V1.0831.00
43_E79_I1.0791.00
105_A112_P1.0791.00
29_G33_F1.0691.00
71_K160_F1.0501.00
148_L155_Q1.0461.00
63_I125_V1.0371.00
106_K109_G1.0331.00
17_F20_P1.0291.00
122_A125_V1.0151.00
126_G166_I1.0081.00
46_P51_K1.0071.00
63_I166_I1.0001.00
64_N165_Q0.9991.00
29_G183_Y0.9931.00
53_I74_V0.9871.00
20_P23_A0.9831.00
16_L20_P0.9741.00
22_Y25_D0.9661.00
30_E50_D0.9490.99
165_Q171_D0.9490.99
98_G145_D0.9480.99
114_L179_A0.9480.99
58_V163_M0.9380.99
99_V185_L0.9310.99
100_T142_A0.9250.99
58_V63_I0.9170.99
14_S18_T0.9120.99
58_V177_V0.9090.99
101_F129_L0.9040.99
100_T186_D0.9000.99
39_E60_T0.8920.99
67_H165_Q0.8820.99
55_L127_V0.8770.99
129_L181_A0.8630.99
149_D155_Q0.8610.99
13_V16_L0.8590.99
137_I143_A0.8480.99
59_T62_H0.8420.99
65_R165_Q0.8400.99
34_K54_D0.8400.99
34_K52_N0.8380.99
63_I67_H0.8370.99
23_A27_G0.8360.99
125_V163_M0.8330.99
37_V172_V0.8310.99
51_K183_Y0.8270.98
139_L159_F0.8180.98
19_A23_A0.8050.98
96_K145_D0.7980.98
106_K126_G0.7970.98
166_I170_V0.7940.98
105_A139_L0.7920.98
39_E82_D0.7900.98
130_M136_N0.7890.98
55_L161_A0.7830.98
127_V177_V0.7810.98
78_L155_Q0.7790.98
141_S144_P0.7720.98
8_L12_A0.7670.98
15_L20_P0.7640.97
130_M160_F0.7620.97
76_I183_Y0.7590.97
60_T174_A0.7520.97
149_D152_S0.7470.97
146_L149_D0.7410.97
41_P163_M0.7310.97
68_H71_K0.7290.97
55_L72_V0.7250.97
139_L179_A0.7240.97
19_A22_Y0.7220.96
10_A17_F0.7220.96
167_D171_D0.7200.96
32_H52_N0.7180.96
29_G35_G0.7130.96
9_A19_A0.7120.96
32_H50_D0.7090.96
143_A159_F0.7080.96
11_L14_S0.7070.96
118_S178_T0.7060.96
116_N178_T0.7010.96
120_G176_E0.6970.96
101_F159_F0.6940.96
116_N120_G0.6910.95
8_L15_L0.6870.95
15_L22_Y0.6870.95
8_L14_S0.6790.95
9_A12_A0.6700.95
15_L19_A0.6640.94
124_G167_D0.6600.94
82_D85_A0.6590.94
12_A16_L0.6570.94
104_T115_S0.6570.94
46_P49_I0.6550.94
8_L11_L0.6540.94
62_H70_N0.6510.94
12_A15_L0.6500.94
9_A13_V0.6490.94
71_K130_M0.6440.93
11_L19_A0.6400.93
108_T126_G0.6400.93
98_G142_A0.6400.93
18_T21_V0.6330.93
84_P95_S0.6260.92
159_F183_Y0.6260.92
37_V58_V0.6250.92
11_L15_L0.6250.92
165_Q170_V0.6230.92
129_L139_L0.6190.92
124_G170_V0.6160.92
118_S176_E0.6130.92
8_L22_Y0.6110.92
54_D163_M0.6110.92
16_L22_Y0.6110.92
8_L20_P0.6100.91
98_G143_A0.6060.91
31_I74_V0.6050.91
106_K115_S0.6040.91
116_N121_E0.6040.91
97_V143_A0.6020.91
18_T24_A0.6020.91
76_I139_L0.5960.90
125_V172_V0.5960.90
124_G166_I0.5930.90
112_P126_G0.5920.90
10_A14_S0.5900.90
116_N163_M0.5900.90
8_L16_L0.5890.90
69_S163_M0.5870.90
56_G178_T0.5850.90
75_D105_A0.5850.90
135_G144_P0.5840.90
27_G30_E0.5840.90
29_G36_E0.5760.89
134_D144_P0.5750.89
100_T103_S0.5750.89
60_T125_V0.5740.89
54_D72_V0.5730.89
27_G33_F0.5720.89
53_I161_A0.5680.88
83_L152_S0.5670.88
48_D129_L0.5660.88
8_L21_V0.5590.88
10_A18_T0.5590.88
114_L137_I0.5540.87
9_A17_F0.5490.87
31_I47_E0.5480.86
8_L13_V0.5460.86
77_R154_E0.5460.86
13_V22_Y0.5440.86
14_S19_A0.5430.86
11_L18_T0.5430.86
60_T172_V0.5420.86
73_A132_K0.5400.86
109_G113_L0.5380.85
22_Y27_G0.5360.85
41_P83_L0.5340.85
102_D182_T0.5340.85
100_T141_S0.5320.85
79_I154_E0.5310.85
55_L162_W0.5310.85
12_A17_F0.5300.85
63_I170_V0.5290.85
82_D130_M0.5290.85
12_A20_P0.5270.84
10_A16_L0.5260.84
24_A27_G0.5240.84
96_K152_S0.5220.84
9_A16_L0.5190.83
38_I82_D0.5170.83
141_S145_D0.5170.83
37_V116_N0.5160.83
21_V28_S0.5140.83
78_L97_V0.5090.82
39_E85_A0.5080.82
133_N160_F0.5070.82
55_L69_S0.5050.82
8_L17_F0.5020.81
20_P25_D0.5000.81
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2jmrA 1 0.7979 100 0.299 Contact Map
2xg5B 1 0.7819 100 0.302 Contact Map
2uy6B 2 0.8191 100 0.312 Contact Map
2jtyA 1 0.8138 100 0.317 Contact Map
1pdkB 1 0.7447 100 0.342 Contact Map
3bwuF 1 0.6543 100 0.389 Contact Map
2w07B 1 0.6277 100 0.394 Contact Map
5afoA 1 0.9096 99.9 0.419 Contact Map
4dwhB 1 0.7021 99.9 0.419 Contact Map
3bfqG 1 0.6968 99.9 0.421 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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