YFJD - ECOLI - GREMLIN Contacts

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YFJD - UPF0053 inner membrane protein YfjD

UniProt:	P37908	Sequences: MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12442
Length:	428 (406)
Sequences:	8094 (5247)
Seq/√Len:	260.4

ECOLI - YFJD YTFL YEGH YOAE CORC
BACSU - YHDP YHDT YQHB YUGS YRKA
HALSA - Q9HN02 Q9HHN9 Q9HRX1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
214_I	315_L	4.163	1.00
386_E	392_T	3.732	1.00
351_I	416_V	3.631	1.00
395_R	400_D	3.418	1.00
393_R	400_D	3.203	1.00
393_R	402_D	3.104	1.00
242_R	247_D	3.095	1.00
380_I	414_V	2.966	1.00
222_D	225_S	2.963	1.00
282_V	291_Q	2.939	1.00
221_D	225_S	2.821	1.00
350_I	404_L	2.807	1.00
216_G	241_Y	2.747	1.00
256_E	277_D	2.727	1.00
242_R	273_L	2.662	1.00
345_N	348_S	2.650	1.00
402_D	417_F	2.627	1.00
400_D	417_F	2.589	1.00
144_W	148_A	2.533	1.00
350_I	413_Q	2.526	1.00
120_Y	123_K	2.515	1.00
271_T	274_R	2.512	1.00
219_I	242_R	2.498	1.00
240_L	276_A	2.496	1.00
400_D	419_V	2.401	1.00
204_V	291_Q	2.374	1.00
133_A	137_I	2.367	1.00
103_F	149_I	2.337	1.00
304_L	315_L	2.337	1.00
286_T	294_K	2.280	1.00
216_G	245_L	2.259	1.00
214_I	312_I	2.245	1.00
51_R	133_A	2.169	1.00
360_I	364_F	2.141	1.00
38_L	52_V	2.140	1.00
404_L	415_K	2.105	1.00
379_V	396_I	2.060	1.00
219_I	249_I	2.053	1.00
51_R	130_F	2.051	1.00
291_Q	316_V	2.039	1.00
344_Q	348_S	2.036	1.00
304_L	312_I	2.025	1.00
376_V	414_V	2.018	1.00
20_S	74_N	2.003	1.00
42_A	53_E	2.003	1.00
219_I	273_L	1.999	1.00
61_R	140_M	1.981	1.00
217_I	226_I	1.962	1.00
207_I	288_L	1.961	1.00
152_M	156_M	1.960	1.00
22_Y	131_L	1.948	1.00
251_M	279_I	1.947	1.00
207_I	316_V	1.943	1.00
405_D	413_Q	1.925	1.00
348_S	415_K	1.922	1.00
54_K	133_A	1.827	1.00
360_I	416_V	1.820	1.00
217_I	240_L	1.815	1.00
127_P	131_L	1.799	1.00
348_S	417_F	1.771	1.00
46_N	126_Y	1.771	1.00
37_R	122_E	1.758	1.00
355_A	360_I	1.746	1.00
41_M	126_Y	1.727	1.00
241_Y	248_A	1.722	1.00
407_Q	412_K	1.705	1.00
341_V	355_A	1.668	1.00
228_R	232_H	1.664	1.00
236_G	253_R	1.662	1.00
405_D	412_K	1.661	1.00
178_V	193_L	1.641	1.00
51_R	129_S	1.614	1.00
302_V	315_L	1.602	1.00
221_D	226_I	1.597	1.00
319_E	323_E	1.597	1.00
355_A	376_V	1.586	1.00
343_P	349_V	1.571	1.00
220_N	242_R	1.570	1.00
148_A	152_M	1.568	1.00
350_I	415_K	1.560	1.00
196_V	325_I	1.553	1.00
402_D	415_K	1.543	1.00
202_M	206_D	1.539	1.00
26_S	128_S	1.531	1.00
360_I	376_V	1.518	1.00
361_N	366_W	1.511	1.00
401_I	414_V	1.495	1.00
351_I	376_V	1.495	1.00
218_D	221_D	1.494	1.00
284_E	313_Q	1.493	1.00
286_T	291_Q	1.490	1.00
95_A	99_G	1.483	1.00
343_P	346_D	1.471	1.00
192_M	196_V	1.471	1.00
380_I	401_I	1.468	1.00
344_Q	350_I	1.464	1.00
215_I	229_Q	1.447	1.00
395_R	419_V	1.443	1.00
20_S	70_N	1.439	1.00
123_K	127_P	1.435	1.00
288_L	321_I	1.429	1.00
242_R	249_I	1.428	1.00
398_E	419_V	1.415	1.00
244_S	247_D	1.410	1.00
39_R	43_K	1.406	1.00
344_Q	415_K	1.401	1.00
380_I	403_I	1.397	1.00
399_Y	418_P	1.396	1.00
75_I	78_S	1.377	1.00
351_I	360_I	1.370	1.00
251_M	302_V	1.355	1.00
215_I	235_H	1.355	1.00
11_I	15_I	1.355	1.00
381_L	411_I	1.353	1.00
380_I	394_V	1.353	1.00
52_V	129_S	1.352	1.00
396_I	401_I	1.350	1.00
23_F	69_G	1.346	1.00
53_E	57_R	1.345	1.00
322_L	326_V	1.341	1.00
12_I	80_L	1.340	1.00
65_L	135_L	1.337	1.00
52_V	125_A	1.332	1.00
42_A	50_K	1.328	1.00
192_M	325_I	1.321	1.00
140_M	144_W	1.319	1.00
215_I	238_I	1.315	1.00
293_V	296_Q	1.311	1.00
225_S	228_R	1.310	1.00
302_V	317_T	1.308	1.00
137_I	140_M	1.304	1.00
131_L	134_P	1.301	1.00
19_I	73_V	1.297	1.00
237_R	301_K	1.297	1.00
48_S	126_Y	1.296	1.00
344_Q	347_G	1.295	1.00
331_T	334_S	1.294	1.00
10_I	14_I	1.290	1.00
50_K	54_K	1.290	1.00
212_S	311_D	1.289	1.00
398_E	418_P	1.288	1.00
128_S	131_L	1.285	1.00
246_D	311_D	1.283	1.00
383_A	396_I	1.283	1.00
373_A	382_E	1.283	1.00
270_E	274_R	1.269	1.00
404_L	413_Q	1.268	1.00
130_F	134_P	1.264	1.00
25_G	124_V	1.263	1.00
45_G	49_A	1.263	1.00
8_T	12_I	1.246	1.00
294_K	298_N	1.236	1.00
260_L	275_A	1.232	1.00
91_D	95_A	1.229	1.00
39_R	53_E	1.227	1.00
380_I	384_L	1.221	1.00
211_R	246_D	1.211	1.00
148_A	151_R	1.198	1.00
48_S	130_F	1.186	1.00
23_F	135_L	1.179	1.00
204_V	305_V	1.167	1.00
215_I	233_S	1.159	1.00
41_M	46_N	1.157	1.00
357_V	361_N	1.155	1.00
399_Y	416_V	1.149	1.00
233_S	238_I	1.145	1.00
28_T	31_M	1.144	1.00
329_F	334_S	1.143	1.00
347_G	418_P	1.143	1.00
279_I	304_L	1.141	1.00
248_A	304_L	1.134	1.00
249_I	276_A	1.132	1.00
47_R	50_K	1.131	1.00
13_L	77_A	1.131	1.00
46_N	49_A	1.131	1.00
221_D	229_Q	1.125	1.00
246_D	312_I	1.117	1.00
38_L	53_E	1.115	1.00
341_V	363_A	1.110	1.00
67_L	70_N	1.103	1.00
211_R	311_D	1.100	1.00
205_D	284_E	1.098	1.00
65_L	143_V	1.098	1.00
48_S	52_V	1.092	1.00
112_L	153_L	1.091	1.00
237_R	319_E	1.085	1.00
134_P	137_I	1.083	1.00
15_I	19_I	1.081	1.00
283_P	286_T	1.081	1.00
204_V	282_V	1.074	1.00
364_F	399_Y	1.058	1.00
361_N	368_L	1.053	1.00
116_I	159_I	1.048	1.00
154_M	159_I	1.047	1.00
319_E	329_F	1.037	1.00
216_G	312_I	1.036	1.00
74_N	105_V	1.031	1.00
70_N	74_N	1.030	1.00
81_G	101_L	1.026	1.00
17_V	104_V	1.024	1.00
174_L	181_S	1.023	1.00
342_T	350_I	1.015	1.00
361_N	367_H	1.013	1.00
394_V	401_I	1.005	1.00
377_N	381_L	0.997	1.00
55_L	129_S	0.997	1.00
401_I	416_V	0.997	1.00
22_Y	128_S	0.995	1.00
280_Y	294_K	0.991	1.00
381_L	387_I	0.988	1.00
20_S	24_S	0.988	1.00
340_E	352_D	0.987	1.00
282_V	303_G	0.987	1.00
252_L	275_A	0.977	1.00
282_V	305_V	0.976	1.00
390_A	405_D	0.967	1.00
78_S	82_T	0.954	1.00
90_G	93_G	0.951	1.00
169_L	177_I	0.950	1.00
13_L	101_L	0.949	1.00
24_S	28_T	0.946	1.00
54_K	58_K	0.943	1.00
86_M	90_G	0.942	1.00
207_I	321_I	0.940	1.00
25_G	117_A	0.939	1.00
384_L	394_V	0.939	1.00
27_E	114_K	0.930	1.00
141_P	145_L	0.928	1.00
110_E	114_K	0.927	1.00
55_L	62_L	0.926	1.00
224_K	228_R	0.925	1.00
136_Q	140_M	0.923	1.00
286_T	290_T	0.918	1.00
58_K	61_R	0.917	1.00
213_E	410_M	0.915	1.00
352_D	413_Q	0.913	1.00
152_M	155_R	0.913	1.00
218_D	243_D	0.912	1.00
356_N	359_E	0.909	1.00
109_A	114_K	0.909	1.00
70_N	73_V	0.908	1.00
49_A	126_Y	0.906	1.00
227_L	231_S	0.905	1.00
77_A	101_L	0.905	1.00
145_L	148_A	0.904	1.00
79_A	82_T	0.899	1.00
295_F	303_G	0.897	1.00
40_H	44_Q	0.895	1.00
8_T	11_I	0.894	1.00
67_L	78_S	0.894	1.00
93_G	97_A	0.892	1.00
395_R	398_E	0.890	1.00
218_D	241_Y	0.887	1.00
379_V	401_I	0.887	1.00
219_I	276_A	0.887	1.00
42_A	46_N	0.886	1.00
220_N	273_L	0.885	1.00
127_P	130_F	0.885	1.00
243_D	247_D	0.884	1.00
384_L	388_P	0.880	1.00
368_L	379_V	0.879	1.00
81_G	85_G	0.879	1.00
341_V	349_V	0.874	1.00
199_L	289_S	0.874	1.00
33_L	121_P	0.870	1.00
82_T	97_A	0.869	1.00
230_L	238_I	0.866	1.00
99_G	103_F	0.864	1.00
383_A	394_V	0.859	1.00
217_I	272_M	0.855	1.00
307_N	310_G	0.855	1.00
228_R	262_S	0.850	0.99
353_G	376_V	0.846	0.99
270_E	275_A	0.845	0.99
341_V	351_I	0.845	0.99
280_Y	303_G	0.843	0.99
79_A	98_T	0.835	0.99
33_L	38_L	0.832	0.99
307_N	313_Q	0.830	0.99
223_W	226_I	0.826	0.99
228_R	231_S	0.824	0.99
283_P	308_E	0.824	0.99
357_V	368_L	0.822	0.99
65_L	136_Q	0.821	0.99
301_K	322_L	0.819	0.99
38_L	56_L	0.819	0.99
37_R	41_M	0.816	0.99
199_L	321_I	0.812	0.99
369_P	373_A	0.810	0.99
377_N	410_M	0.809	0.99
214_I	245_L	0.806	0.99
151_R	155_R	0.805	0.99
213_E	354_T	0.804	0.99
203_T	206_D	0.803	0.99
379_V	383_A	0.803	0.99
51_R	54_K	0.801	0.99
211_R	307_N	0.798	0.99
219_I	226_I	0.795	0.99
230_L	257_A	0.794	0.99
21_A	25_G	0.793	0.99
75_I	82_T	0.792	0.99
204_V	316_V	0.790	0.99
199_L	292_L	0.788	0.99
13_L	84_V	0.787	0.99
319_E	324_E	0.783	0.99
26_S	132_L	0.783	0.99
223_W	270_E	0.781	0.99
25_G	29_G	0.781	0.99
352_D	355_A	0.779	0.99
68_I	142_L	0.777	0.99
70_N	110_E	0.777	0.99
256_E	333_M	0.774	0.99
35_R	57_R	0.773	0.99
78_S	81_G	0.772	0.99
353_G	377_N	0.771	0.99
67_L	71_N	0.770	0.99
323_E	328_D	0.770	0.99
236_G	255_R	0.769	0.99
307_N	311_D	0.769	0.99
261_M	264_K	0.766	0.99
28_T	117_A	0.765	0.99
12_I	15_I	0.765	0.99
92_A	96_I	0.757	0.99
280_Y	298_N	0.756	0.99
294_K	297_R	0.754	0.99
319_E	328_D	0.754	0.99
174_L	185_I	0.753	0.99
319_E	331_T	0.753	0.99
70_N	105_V	0.751	0.99
160_K	164_V	0.748	0.99
59_P	62_L	0.742	0.99
319_E	332_S	0.742	0.99
16_M	76_L	0.741	0.99
353_G	411_I	0.736	0.99
20_S	105_V	0.734	0.99
190_Q	194_L	0.733	0.98
82_T	86_M	0.733	0.98
273_L	276_A	0.733	0.98
86_M	93_G	0.732	0.98
366_W	399_Y	0.729	0.98
67_L	74_N	0.723	0.98
71_N	114_K	0.722	0.98
239_V	248_A	0.720	0.98
12_I	16_M	0.717	0.98
73_V	77_A	0.716	0.98
323_E	331_T	0.713	0.98
18_V	21_A	0.710	0.98
301_K	319_E	0.710	0.98
230_L	254_V	0.709	0.98
171_K	201_K	0.707	0.98
239_V	251_M	0.706	0.98
41_M	45_G	0.703	0.98
384_L	392_T	0.702	0.98
231_S	259_R	0.702	0.98
66_V	132_L	0.702	0.98
20_S	73_V	0.701	0.98
319_E	334_S	0.700	0.98
237_R	253_R	0.699	0.98
387_I	406_V	0.699	0.98
22_Y	69_G	0.699	0.98
71_N	105_V	0.697	0.98
248_A	312_I	0.697	0.98
205_D	313_Q	0.697	0.98
383_A	397_G	0.696	0.98
229_Q	232_H	0.696	0.98
75_I	79_A	0.695	0.98
241_Y	244_S	0.695	0.98
60_D	151_R	0.691	0.98
390_A	406_V	0.691	0.98
195_S	325_I	0.690	0.98
239_V	304_L	0.690	0.98
61_R	136_Q	0.689	0.98
373_A	379_V	0.688	0.98
253_R	256_E	0.684	0.98
71_N	75_I	0.684	0.98
342_T	413_Q	0.683	0.98
279_I	302_V	0.683	0.98
138_L	141_P	0.680	0.98
281_F	306_V	0.679	0.98
77_A	105_V	0.671	0.97
318_V	329_F	0.670	0.97
46_N	50_K	0.669	0.97
343_P	347_G	0.669	0.97
42_A	45_G	0.668	0.97
291_Q	321_I	0.667	0.97
217_I	229_Q	0.667	0.97
192_M	199_L	0.667	0.97
217_I	238_I	0.664	0.97
155_R	160_K	0.664	0.97
70_N	111_V	0.664	0.97
357_V	373_A	0.663	0.97
48_S	127_P	0.663	0.97
94_V	98_T	0.662	0.97
63_I	109_A	0.662	0.97
363_A	366_W	0.661	0.97
119_L	159_I	0.660	0.97
293_V	297_R	0.659	0.97
52_V	56_L	0.659	0.97
217_I	230_L	0.655	0.97
308_E	378_G	0.655	0.97
237_R	332_S	0.655	0.97
48_S	51_R	0.654	0.97
19_I	23_F	0.654	0.97
71_N	102_T	0.654	0.97
237_R	302_V	0.652	0.97
17_V	77_A	0.652	0.97
50_K	53_E	0.650	0.97
154_M	158_G	0.650	0.97
211_R	308_E	0.649	0.97
215_I	232_H	0.649	0.97
209_V	330_T	0.648	0.97
58_K	136_Q	0.648	0.97
225_S	229_Q	0.647	0.97
344_Q	405_D	0.645	0.97
60_D	115_T	0.644	0.97
75_I	98_T	0.643	0.97
324_E	328_D	0.639	0.96
179_H	194_L	0.638	0.96
29_G	125_A	0.635	0.96
218_D	247_D	0.635	0.96
372_D	382_E	0.635	0.96
306_V	312_I	0.635	0.96
14_I	18_V	0.634	0.96
175_R	194_L	0.633	0.96
70_N	109_A	0.633	0.96
75_I	97_A	0.631	0.96
160_K	163_I	0.631	0.96
37_R	40_H	0.626	0.96
24_S	70_N	0.624	0.96
17_V	20_S	0.624	0.96
20_S	71_N	0.623	0.96
204_V	286_T	0.622	0.96
33_L	122_E	0.619	0.96
130_F	133_A	0.619	0.96
63_I	67_L	0.619	0.96
171_K	200_E	0.618	0.96
76_L	80_L	0.617	0.96
24_S	110_E	0.617	0.96
33_L	52_V	0.617	0.96
78_S	83_I	0.616	0.96
102_T	114_K	0.614	0.96
211_R	309_Y	0.612	0.95
200_E	289_S	0.612	0.95
369_P	383_A	0.612	0.95
341_V	360_I	0.611	0.95
75_I	102_T	0.611	0.95
24_S	105_V	0.611	0.95
253_R	277_D	0.609	0.95
124_V	128_S	0.609	0.95
41_M	49_A	0.609	0.95
367_H	397_G	0.609	0.95
217_I	221_D	0.608	0.95
123_K	126_Y	0.608	0.95
343_P	348_S	0.607	0.95
39_R	42_A	0.607	0.95
226_I	230_L	0.607	0.95
231_S	263_E	0.606	0.95
83_I	86_M	0.605	0.95
71_N	74_N	0.604	0.95
171_K	197_L	0.604	0.95
249_I	273_L	0.601	0.95
9_L	13_L	0.600	0.95
406_V	409_N	0.600	0.95
193_L	197_L	0.598	0.95
41_M	44_Q	0.597	0.95
360_I	363_A	0.595	0.95
308_E	311_D	0.593	0.95
210_P	213_E	0.592	0.95
24_S	66_V	0.591	0.95
108_F	153_L	0.588	0.94
389_V	392_T	0.587	0.94
411_I	414_V	0.586	0.94
74_N	80_L	0.586	0.94
395_R	417_F	0.585	0.94
20_S	67_L	0.585	0.94
191_D	195_S	0.585	0.94
48_S	129_S	0.583	0.94
121_P	124_V	0.581	0.94
323_E	334_S	0.579	0.94
260_L	264_K	0.579	0.94
54_K	57_R	0.576	0.94
55_L	136_Q	0.574	0.94
251_M	276_A	0.574	0.94
384_L	393_R	0.574	0.94
51_R	55_L	0.573	0.94
171_K	175_R	0.572	0.94
175_R	198_D	0.572	0.94
66_V	98_T	0.572	0.94
330_T	336_T	0.572	0.94
224_K	262_S	0.571	0.93
175_R	178_V	0.570	0.93
73_V	102_T	0.570	0.93
291_Q	295_F	0.570	0.93
116_I	124_V	0.570	0.93
79_A	94_V	0.570	0.93
377_N	411_I	0.569	0.93
265_K	269_K	0.567	0.93
260_L	270_E	0.567	0.93
202_M	324_E	0.567	0.93
226_I	271_T	0.566	0.93
412_K	415_K	0.565	0.93
70_N	82_T	0.565	0.93
241_Y	247_D	0.565	0.93
71_N	98_T	0.564	0.93
199_L	287_P	0.564	0.93
79_A	83_I	0.563	0.93
379_V	394_V	0.562	0.93
32_T	118_A	0.560	0.93
64_S	71_N	0.558	0.93
292_L	326_V	0.557	0.93
139_M	142_L	0.557	0.93
135_L	139_M	0.556	0.93
280_Y	300_K	0.555	0.93
224_K	269_K	0.554	0.92
16_M	73_V	0.554	0.92
339_E	342_T	0.553	0.92
340_E	355_A	0.552	0.92
292_L	295_F	0.551	0.92
241_Y	245_L	0.550	0.92
31_M	118_A	0.549	0.92
236_G	332_S	0.549	0.92
198_D	201_K	0.549	0.92
86_M	89_Y	0.549	0.92
109_A	113_P	0.548	0.92
219_I	222_D	0.548	0.92
253_R	301_K	0.548	0.92
30_M	125_A	0.547	0.92
29_G	124_V	0.546	0.92
226_I	272_M	0.545	0.92
301_K	329_F	0.545	0.92
56_L	59_P	0.544	0.92
74_N	77_A	0.544	0.92
38_L	49_A	0.543	0.92
245_L	312_I	0.543	0.92
400_D	404_L	0.542	0.92
329_F	332_S	0.542	0.92
77_A	82_T	0.542	0.92
241_Y	249_I	0.541	0.92
207_I	324_E	0.540	0.91
28_T	68_I	0.540	0.91
20_S	66_V	0.539	0.91
361_N	371_D	0.538	0.91
292_L	321_I	0.538	0.91
361_N	369_P	0.536	0.91
183_S	190_Q	0.536	0.91
71_N	82_T	0.536	0.91
204_V	287_P	0.535	0.91
276_A	279_I	0.534	0.91
147_N	151_R	0.534	0.91
236_G	331_T	0.533	0.91
17_V	21_A	0.533	0.91
349_V	364_F	0.532	0.91
358_R	362_K	0.532	0.91
9_L	84_V	0.532	0.91
17_V	109_A	0.531	0.91
211_R	310_G	0.531	0.91
85_G	97_A	0.531	0.91
178_V	185_I	0.531	0.91
35_R	53_E	0.529	0.91
78_S	102_T	0.528	0.91
211_R	313_Q	0.527	0.90
351_I	364_F	0.526	0.90
379_V	397_G	0.524	0.90
83_I	94_V	0.524	0.90
284_E	308_E	0.523	0.90
76_L	79_A	0.523	0.90
347_G	417_F	0.523	0.90
87_R	90_G	0.522	0.90
290_T	293_V	0.520	0.90
206_D	381_L	0.519	0.90
343_P	418_P	0.519	0.90
98_T	105_V	0.518	0.90
323_E	329_F	0.517	0.90
27_E	110_E	0.516	0.90
142_L	146_L	0.516	0.90
287_P	290_T	0.516	0.90
357_V	370_E	0.515	0.89
68_I	102_T	0.514	0.89
116_I	120_Y	0.514	0.89
42_A	48_S	0.514	0.89
397_G	401_I	0.513	0.89
97_A	101_L	0.513	0.89
265_K	270_E	0.512	0.89
330_T	334_S	0.511	0.89
229_Q	233_S	0.510	0.89
67_L	105_V	0.510	0.89
355_A	359_E	0.510	0.89
21_A	98_T	0.510	0.89
27_E	71_N	0.510	0.89
205_D	374_R	0.509	0.89
283_P	306_V	0.509	0.89
64_S	67_L	0.508	0.89
206_D	374_R	0.508	0.89
98_T	101_L	0.508	0.89
260_L	263_E	0.507	0.89
318_V	326_V	0.506	0.89
68_I	71_N	0.506	0.89
218_D	242_R	0.506	0.89
237_R	331_T	0.506	0.89
73_V	109_A	0.506	0.89
28_T	59_P	0.506	0.89
357_V	360_I	0.505	0.89
147_N	150_T	0.505	0.89
33_L	62_L	0.504	0.88
146_L	150_T	0.503	0.88
115_T	118_A	0.503	0.88
24_S	71_N	0.500	0.88
54_K	137_I	0.500	0.88
274_R	278_E	0.500	0.88

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4hg0A	2	0.5421	100	0.5	Contact Map
3lhhA	1	0.2921	100	0.77	Contact Map
3ocoA	2	0.3154	99.9	0.779	Contact Map
3ocmA	5	0.3481	99.9	0.784	Contact Map
3oi8A	2	0.3598	99.9	0.788	Contact Map
2v8qE	1	0.5491	99.9	0.789	Contact Map
3kxrA	3	0.3715	99.9	0.794	Contact Map
3lv9A	2	0.3037	99.9	0.796	Contact Map
4iysA	2	0.3318	99.9	0.802	Contact Map
3dedA	2	0.2009	99.9	0.803	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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