RFBX - ECOLI - GREMLIN Contacts

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RFBX - Putative O-antigen transporter

UniProt:	P37746	Sequences: MNTNKLSLRRNVIYLAVVQGSNYLLPLLTFPYLVRTLGPENFGIFGFCQATMLYMIMFVEYGFNLTATQSIAKAADSKDKVTSIFWAVIFSKIVLIVITLIFLTSMTLLVPEYNKHAVIIWSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSRLAIIPLTFIFVNTKSDIAIAGFIQSSANLVAGIIALAIVVHEGWIGKVTLSLHNVRRSLADGFHVFISTSAISLYSTGIVIILGFISGPTSVGNFNAANTIRNALQGLLNPITQAIYPRISSTLVLNRVKGVILIKKSLTCLSLIGGAFSLILLLGASILVKISIGPGYDNAVIVLMIISPLPFLISLSNVYGIQVMLTHNYKKEFSKILIAAGLLSLLLIFPLTTLFKEIGAAITLLATECLVTSLMLMFVRNNKLLVC	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11980
Length:	415 (396)
Sequences:	17296 (14807)
Seq/√Len:	744.1

ECOLI - RFBX WZXC MURJ WZXE YGHQ MDTK DINF
BACSU - TUAB EPSK YABM YTGP YKVU SP5B YOEA NORM YPNP
HALSA - Q9HSW2 Q9HRT3 Q9HQQ5 Q9HRF2 Q9HMS7 Q9HN79 Q9HRF7
SULSO - Q97XT3 Q97XG2 Q7LXE2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
283_R	286_G	4.705	1.00
211_R	215_A	3.325	1.00
143_K	146_W	3.288	1.00
106_M	109_L	3.004	1.00
46_G	251_N	2.960	1.00
328_V	332_M	2.934	1.00
357_Y	360_E	2.934	1.00
77_S	80_K	2.932	1.00
142_E	277_S	2.779	1.00
309_L	332_M	2.717	1.00
359_K	363_K	2.703	1.00
114_N	117_A	2.617	1.00
313_S	317_K	2.423	1.00
71_I	140_G	2.284	1.00
307_I	311_G	2.281	1.00
368_A	399_V	2.244	1.00
312_A	328_V	2.231	1.00
222_I	362_S	2.138	1.00
234_I	250_F	2.138	1.00
333_I	386_I	2.133	1.00
278_T	286_G	2.126	1.00
112_E	115_K	2.071	1.00
277_S	281_L	2.043	1.00
288_I	292_K	2.042	1.00
340_L	397_C	2.041	1.00
243_G	246_S	2.036	1.00
238_L	242_S	2.012	1.00
14_Y	145_K	2.005	1.00
38_G	41_N	1.994	1.00
312_A	332_M	1.990	1.00
249_N	326_N	1.980	1.00
234_I	376_I	1.968	1.00
364_I	402_L	1.957	1.00
314_I	317_K	1.951	1.00
242_S	246_S	1.936	1.00
330_V	385_E	1.934	1.00
69_Q	73_K	1.925	1.00
35_R	321_G	1.912	1.00
70_S	216_D	1.883	1.00
83_S	206_S	1.848	1.00
104_T	121_W	1.793	1.00
237_I	380_T	1.772	1.00
47_F	239_G	1.768	1.00
383_F	390_I	1.759	1.00
371_L	398_L	1.749	1.00
311_G	314_I	1.737	1.00
171_D	174_I	1.720	1.00
375_L	391_T	1.701	1.00
290_I	351_V	1.688	1.00
380_T	388_A	1.687	1.00
279_L	355_H	1.681	1.00
143_K	197_E	1.673	1.00
322_P	325_D	1.671	1.00
137_L	141_K	1.667	1.00
80_K	83_S	1.662	1.00
145_K	149_L	1.658	1.00
333_I	393_L	1.639	1.00
301_G	342_S	1.638	1.00
207_L	211_R	1.635	1.00
379_L	391_T	1.630	1.00
237_I	376_I	1.620	1.00
142_E	274_R	1.609	1.00
316_V	331_L	1.593	1.00
67_A	88_V	1.583	1.00
313_S	328_V	1.581	1.00
378_P	381_T	1.576	1.00
226_A	366_I	1.564	1.00
45_F	49_Q	1.562	1.00
313_S	332_M	1.555	1.00
73_K	356_N	1.550	1.00
329_I	386_I	1.542	1.00
305_S	339_F	1.534	1.00
287_V	351_V	1.533	1.00
245_T	249_N	1.515	1.00
308_L	335_S	1.504	1.00
278_T	289_L	1.501	1.00
257_R	334_I	1.498	1.00
242_S	385_E	1.489	1.00
377_F	381_T	1.489	1.00
379_L	383_F	1.480	1.00
121_W	125_P	1.476	1.00
158_I	182_A	1.462	1.00
34_V	252_A	1.461	1.00
316_V	327_A	1.449	1.00
237_I	377_F	1.448	1.00
157_A	185_V	1.445	1.00
219_H	362_S	1.443	1.00
378_P	382_L	1.428	1.00
253_A	327_A	1.425	1.00
82_T	86_W	1.423	1.00
329_I	332_M	1.419	1.00
333_I	390_I	1.419	1.00
376_I	380_T	1.412	1.00
374_L	378_P	1.408	1.00
206_S	209_N	1.408	1.00
170_S	174_I	1.407	1.00
311_G	315_L	1.404	1.00
238_L	247_V	1.400	1.00
41_N	44_I	1.398	1.00
340_L	400_T	1.394	1.00
330_V	389_A	1.394	1.00
372_S	376_I	1.391	1.00
291_K	295_T	1.386	1.00
271_I	293_S	1.380	1.00
401_S	405_M	1.374	1.00
103_L	124_V	1.373	1.00
234_I	392_L	1.363	1.00
107_T	121_W	1.359	1.00
174_I	178_I	1.359	1.00
85_F	137_L	1.342	1.00
286_G	289_L	1.336	1.00
363_K	367_A	1.321	1.00
66_T	216_D	1.313	1.00
275_I	287_V	1.309	1.00
337_L	393_L	1.308	1.00
20_G	24_L	1.301	1.00
21_S	152_I	1.296	1.00
30_F	255_T	1.293	1.00
387_G	391_T	1.278	1.00
391_T	395_T	1.276	1.00
39_P	249_N	1.273	1.00
333_I	389_A	1.249	1.00
246_S	385_E	1.244	1.00
379_L	382_L	1.243	1.00
126_A	130_N	1.242	1.00
31_P	35_R	1.234	1.00
285_K	288_I	1.228	1.00
232_T	235_V	1.227	1.00
34_V	320_I	1.227	1.00
253_A	330_V	1.223	1.00
298_S	302_G	1.220	1.00
27_L	31_P	1.215	1.00
326_N	329_I	1.214	1.00
113_Y	116_H	1.207	1.00
125_P	128_V	1.194	1.00
150_S	190_A	1.194	1.00
252_A	320_I	1.193	1.00
29_T	159_I	1.187	1.00
384_K	387_G	1.182	1.00
321_G	324_Y	1.176	1.00
308_L	331_L	1.175	1.00
233_G	373_L	1.170	1.00
46_G	248_G	1.163	1.00
219_H	359_K	1.162	1.00
275_I	354_T	1.162	1.00
312_A	331_L	1.160	1.00
74_A	80_K	1.159	1.00
191_L	195_V	1.157	1.00
119_I	176_G	1.155	1.00
238_L	388_A	1.154	1.00
72_A	140_G	1.153	1.00
88_V	213_S	1.152	1.00
290_I	347_Y	1.152	1.00
47_F	247_V	1.149	1.00
39_P	323_G	1.148	1.00
305_S	309_L	1.145	1.00
53_L	57_M	1.145	1.00
386_I	389_A	1.144	1.00
284_V	355_H	1.144	1.00
24_L	28_L	1.143	1.00
226_A	369_G	1.138	1.00
42_F	46_G	1.135	1.00
226_A	362_S	1.125	1.00
279_L	287_V	1.120	1.00
316_V	328_V	1.119	1.00
243_G	247_V	1.117	1.00
218_F	222_I	1.116	1.00
120_I	124_V	1.111	1.00
87_A	210_V	1.110	1.00
163_F	167_N	1.105	1.00
336_P	393_L	1.103	1.00
160_P	164_I	1.103	1.00
39_P	248_G	1.098	1.00
212_R	356_N	1.097	1.00
91_S	210_V	1.095	1.00
216_D	358_K	1.093	1.00
18_V	148_T	1.089	1.00
372_S	395_T	1.086	1.00
173_A	176_G	1.086	1.00
100_L	104_T	1.085	1.00
112_E	117_A	1.085	1.00
45_F	175_A	1.083	1.00
70_S	212_R	1.080	1.00
94_V	98_I	1.077	1.00
238_L	250_F	1.077	1.00
150_S	189_I	1.076	1.00
370_L	374_L	1.076	1.00
128_V	131_L	1.076	1.00
274_R	277_S	1.075	1.00
364_I	403_M	1.071	1.00
22_N	155_R	1.070	1.00
177_F	180_S	1.069	1.00
108_L	121_W	1.067	1.00
81_V	141_K	1.064	1.00
188_I	192_A	1.061	1.00
60_E	64_N	1.061	1.00
11_N	142_E	1.061	1.00
337_L	389_A	1.059	1.00
179_Q	183_N	1.050	1.00
161_L	178_I	1.048	1.00
383_F	387_G	1.047	1.00
330_V	386_I	1.045	1.00
63_F	88_V	1.043	1.00
112_E	116_H	1.042	1.00
12_V	270_A	1.042	1.00
100_L	103_L	1.039	1.00
343_L	400_T	1.033	1.00
44_I	244_P	1.027	1.00
223_S	361_F	1.024	1.00
249_N	327_A	1.022	1.00
144_M	270_A	1.022	1.00
30_F	320_I	1.021	1.00
66_T	213_S	1.020	1.00
32_Y	36_T	1.020	1.00
325_D	328_V	1.020	1.00
7_S	10_R	1.019	1.00
337_L	340_L	1.015	1.00
272_Y	276_S	1.011	1.00
366_I	370_L	1.008	1.00
134_P	191_L	1.006	1.00
237_I	241_I	1.005	1.00
303_A	306_L	1.003	1.00
16_A	266_P	1.002	1.00
68_T	136_W	1.001	1.00
25_L	159_I	0.999	1.00
83_S	87_A	0.997	1.00
162_T	178_I	0.995	1.00
105_S	108_L	0.991	1.00
287_V	355_H	0.984	1.00
230_Y	372_S	0.981	1.00
104_T	108_L	0.980	1.00
73_K	212_R	0.976	1.00
363_K	366_I	0.975	1.00
71_I	81_V	0.974	1.00
19_Q	23_Y	0.973	1.00
253_A	334_I	0.971	1.00
121_W	124_V	0.971	1.00
15_L	270_A	0.971	1.00
353_L	361_F	0.959	1.00
31_P	34_V	0.958	1.00
375_L	379_L	0.957	1.00
371_L	375_L	0.957	1.00
36_T	167_N	0.955	1.00
192_A	196_H	0.953	1.00
292_K	295_T	0.952	1.00
306_L	310_L	0.944	1.00
31_P	320_I	0.944	1.00
241_I	380_T	0.944	1.00
299_L	303_A	0.944	1.00
12_V	267_I	0.943	1.00
376_I	379_L	0.942	1.00
229_L	369_G	0.941	1.00
214_L	218_F	0.937	1.00
334_I	389_A	0.937	1.00
70_S	73_K	0.934	1.00
67_A	71_I	0.934	1.00
66_T	70_S	0.933	1.00
309_L	312_A	0.933	1.00
125_P	180_S	0.931	1.00
123_F	126_A	0.929	1.00
202_K	205_L	0.921	1.00
200_I	203_V	0.919	1.00
347_Y	403_M	0.917	1.00
214_L	217_G	0.917	1.00
146_W	193_I	0.916	1.00
257_R	338_P	0.915	1.00
175_A	179_Q	0.914	1.00
33_L	175_A	0.914	1.00
260_L	264_L	0.913	1.00
161_L	165_F	0.906	1.00
79_D	83_S	0.904	1.00
253_A	331_L	0.903	1.00
278_T	283_R	0.902	1.00
178_I	182_A	0.900	1.00
347_Y	404_L	0.900	1.00
274_R	278_T	0.894	1.00
295_T	299_L	0.894	1.00
189_I	193_I	0.894	1.00
39_P	245_T	0.893	1.00
398_L	402_L	0.893	1.00
235_V	247_V	0.893	1.00
332_M	336_P	0.892	1.00
80_K	209_N	0.884	1.00
234_I	372_S	0.884	1.00
317_K	325_D	0.881	1.00
15_L	148_T	0.881	1.00
177_F	181_S	0.879	1.00
38_G	323_G	0.878	1.00
43_G	248_G	0.876	1.00
165_F	170_S	0.875	1.00
48_C	123_F	0.874	1.00
362_S	366_I	0.874	1.00
182_A	186_A	0.869	1.00
309_L	313_S	0.868	1.00
250_F	334_I	0.868	1.00
315_L	319_S	0.863	1.00
372_S	392_L	0.862	1.00
252_A	324_Y	0.862	1.00
309_L	336_P	0.860	1.00
69_Q	356_N	0.857	1.00
8_L	12_V	0.857	1.00
107_T	111_P	0.856	1.00
168_T	171_D	0.854	1.00
38_G	324_Y	0.850	1.00
13_I	17_V	0.849	1.00
90_F	94_V	0.847	1.00
66_T	217_G	0.847	1.00
36_T	166_V	0.847	1.00
118_V	121_W	0.847	1.00
215_A	218_F	0.846	1.00
105_S	109_L	0.845	1.00
12_V	16_A	0.844	1.00
94_V	97_V	0.843	1.00
251_N	255_T	0.841	1.00
62_G	217_G	0.834	1.00
86_W	90_F	0.833	1.00
208_H	211_R	0.833	1.00
393_L	396_E	0.833	1.00
325_D	329_I	0.832	1.00
375_L	394_A	0.831	1.00
304_F	307_I	0.831	1.00
74_A	77_S	0.828	1.00
98_I	102_F	0.828	1.00
376_I	392_L	0.820	1.00
361_F	365_L	0.820	1.00
248_G	252_A	0.819	1.00
373_L	377_F	0.818	1.00
297_L	342_S	0.817	1.00
50_A	235_V	0.816	1.00
390_I	393_L	0.815	1.00
239_G	247_V	0.812	1.00
31_P	319_S	0.811	1.00
9_R	13_I	0.807	1.00
270_A	273_P	0.807	1.00
9_R	12_V	0.806	1.00
390_I	394_A	0.803	1.00
327_A	330_V	0.802	1.00
39_P	324_Y	0.800	1.00
352_M	361_F	0.800	1.00
49_Q	53_L	0.798	1.00
102_F	106_M	0.797	1.00
154_S	158_I	0.796	1.00
360_E	363_K	0.794	1.00
60_E	92_K	0.794	1.00
129_G	187_G	0.792	1.00
164_I	167_N	0.789	1.00
316_V	320_I	0.787	1.00
402_L	405_M	0.786	1.00
161_L	181_S	0.785	1.00
97_V	101_I	0.785	1.00
129_G	184_L	0.784	1.00
14_Y	18_V	0.784	1.00
216_D	220_V	0.783	1.00
78_K	81_V	0.782	1.00
180_S	183_N	0.779	1.00
71_I	141_K	0.776	1.00
53_L	56_I	0.775	1.00
238_L	385_E	0.769	1.00
10_R	145_K	0.767	1.00
150_S	186_A	0.766	1.00
30_F	34_V	0.765	1.00
236_I	240_F	0.763	1.00
108_L	111_P	0.761	1.00
40_E	244_P	0.759	1.00
190_A	194_V	0.758	1.00
48_C	119_I	0.756	1.00
78_K	82_T	0.753	1.00
254_N	258_N	0.752	1.00
252_A	255_T	0.748	1.00
381_T	388_A	0.745	1.00
45_F	172_I	0.745	1.00
25_L	29_T	0.745	1.00
219_H	358_K	0.744	1.00
255_T	259_A	0.743	1.00
33_L	162_T	0.742	1.00
215_A	219_H	0.741	1.00
303_A	307_I	0.739	1.00
234_I	254_N	0.737	1.00
232_T	258_N	0.736	1.00
309_L	335_S	0.736	1.00
37_L	41_N	0.733	1.00
336_P	340_L	0.731	1.00
84_I	88_V	0.730	1.00
17_V	21_S	0.728	1.00
225_S	229_L	0.728	1.00
11_N	270_A	0.727	1.00
130_N	133_Y	0.726	1.00
69_Q	358_K	0.724	1.00
93_I	97_V	0.723	1.00
371_L	374_L	0.723	1.00
122_S	125_P	0.722	1.00
293_S	346_V	0.722	1.00
364_I	368_A	0.720	1.00
336_P	339_F	0.717	1.00
32_Y	163_F	0.711	1.00
367_A	402_L	0.710	1.00
278_T	281_L	0.710	1.00
119_I	123_F	0.710	1.00
16_A	20_G	0.710	1.00
86_W	89_I	0.708	1.00
209_N	212_R	0.708	1.00
386_I	390_I	0.705	1.00
126_A	183_N	0.705	1.00
376_I	388_A	0.705	1.00
164_I	168_T	0.704	1.00
220_V	358_K	0.704	1.00
161_L	164_I	0.703	1.00
358_K	361_F	0.702	1.00
159_I	163_F	0.700	1.00
106_M	110_V	0.700	1.00
375_L	378_P	0.700	1.00
317_K	328_V	0.699	1.00
228_S	232_T	0.695	1.00
47_F	50_A	0.694	1.00
180_S	184_L	0.694	1.00
89_I	134_P	0.694	1.00
256_I	320_I	0.693	1.00
350_Q	353_L	0.689	1.00
42_F	248_G	0.688	1.00
233_G	237_I	0.685	1.00
101_I	105_S	0.683	1.00
146_W	149_L	0.682	1.00
215_A	359_K	0.681	1.00
289_L	293_S	0.680	1.00
246_S	249_N	0.680	1.00
87_A	205_L	0.680	1.00
226_A	365_L	0.677	1.00
337_L	396_E	0.677	1.00
297_L	346_V	0.675	1.00
107_T	110_V	0.674	1.00
272_Y	350_Q	0.666	1.00
241_I	381_T	0.665	1.00
382_L	386_I	0.663	1.00
272_Y	354_T	0.661	1.00
158_I	162_T	0.660	1.00
193_I	197_E	0.660	1.00
317_K	321_G	0.659	1.00
248_G	251_N	0.659	1.00
265_N	269_Q	0.658	1.00
235_V	251_N	0.657	1.00
138_F	194_V	0.657	1.00
156_L	160_P	0.656	1.00
232_T	236_I	0.655	1.00
68_T	72_A	0.652	1.00
90_F	93_I	0.650	1.00
118_V	122_S	0.649	1.00
124_V	128_V	0.648	1.00
210_V	214_L	0.648	1.00
255_T	258_N	0.644	1.00
21_S	156_L	0.643	1.00
139_Q	147_L	0.642	1.00
126_A	129_G	0.642	1.00
278_T	287_V	0.642	1.00
312_A	335_S	0.641	1.00
276_S	280_V	0.640	1.00
18_V	152_I	0.640	1.00
42_F	252_A	0.637	1.00
247_V	251_N	0.637	1.00
174_I	177_F	0.637	1.00
30_F	42_F	0.636	1.00
158_I	178_I	0.636	1.00
393_L	397_C	0.636	1.00
40_E	44_I	0.634	1.00
83_S	209_N	0.634	1.00
250_F	254_N	0.634	1.00
223_S	365_L	0.632	1.00
154_S	186_A	0.632	1.00
67_A	84_I	0.630	1.00
56_I	60_E	0.629	1.00
118_V	173_A	0.626	1.00
149_L	153_L	0.626	1.00
337_L	392_L	0.624	1.00
45_F	176_G	0.623	1.00
220_V	353_L	0.623	1.00
68_T	140_G	0.622	1.00
13_I	20_G	0.622	1.00
135_I	139_Q	0.621	1.00
32_Y	167_N	0.616	1.00
113_Y	117_A	0.616	1.00
96_I	131_L	0.614	1.00
141_K	197_E	0.614	1.00
347_Y	400_T	0.611	1.00
15_L	19_Q	0.610	1.00
213_S	217_G	0.610	1.00
136_W	140_G	0.606	1.00
397_C	401_S	0.605	1.00
389_A	393_L	0.604	1.00
360_E	364_I	0.603	1.00
201_G	204_T	0.603	1.00
344_S	400_T	0.599	1.00
186_A	190_A	0.594	1.00
305_S	335_S	0.594	1.00
86_W	203_V	0.594	1.00
223_S	227_I	0.593	1.00
271_I	275_I	0.591	1.00
123_F	127_L	0.591	1.00
350_Q	354_T	0.591	1.00
257_R	260_L	0.591	1.00
348_G	353_L	0.591	1.00
21_S	25_L	0.590	1.00
10_R	13_I	0.588	1.00
366_I	369_G	0.586	1.00
224_T	228_S	0.583	1.00
274_R	289_L	0.582	1.00
323_G	326_N	0.581	1.00
64_N	136_W	0.580	1.00
301_G	339_F	0.580	1.00
255_T	320_I	0.580	1.00
150_S	193_I	0.579	1.00
306_L	309_L	0.579	1.00
392_L	395_T	0.578	1.00
396_E	399_V	0.576	1.00
371_L	395_T	0.576	1.00
51_T	236_I	0.575	1.00
26_P	30_F	0.575	1.00
259_A	263_L	0.573	1.00
90_F	203_V	0.573	1.00
298_S	339_F	0.570	1.00
96_I	100_L	0.570	1.00
266_P	269_Q	0.569	1.00
289_L	292_K	0.566	1.00
74_A	84_I	0.565	1.00
87_A	91_S	0.563	1.00
267_I	271_I	0.562	1.00
103_L	107_T	0.562	1.00
230_Y	369_G	0.561	1.00
70_S	74_A	0.560	1.00
83_S	204_T	0.558	1.00
263_L	266_P	0.558	1.00
212_R	216_D	0.557	1.00
125_P	129_G	0.556	1.00
190_A	193_I	0.556	1.00
246_S	250_F	0.555	1.00
83_S	86_W	0.555	1.00
122_S	177_F	0.552	1.00
47_F	235_V	0.551	1.00
153_L	189_I	0.551	1.00
379_L	387_G	0.551	1.00
187_G	191_L	0.550	1.00
162_T	166_V	0.548	1.00
223_S	362_S	0.547	1.00
107_T	124_V	0.547	1.00
17_V	20_G	0.544	1.00
70_S	84_I	0.544	1.00
157_A	161_L	0.542	1.00
153_L	157_A	0.541	1.00
314_I	318_I	0.539	1.00
367_A	370_L	0.539	1.00
15_L	144_M	0.539	1.00
157_A	160_P	0.538	1.00
181_S	185_V	0.537	1.00
122_S	180_S	0.536	1.00
90_F	201_G	0.535	1.00
392_L	396_E	0.534	1.00
297_L	301_G	0.534	1.00
179_Q	182_A	0.534	1.00
195_V	199_W	0.534	1.00
91_S	95_L	0.533	1.00
333_I	336_P	0.533	1.00
348_G	361_F	0.529	1.00
173_A	177_F	0.529	1.00
205_L	210_V	0.528	1.00
71_I	85_F	0.527	1.00
331_L	335_S	0.526	1.00
92_K	96_I	0.525	1.00
40_E	245_T	0.524	1.00
33_L	42_F	0.523	1.00
317_K	322_P	0.522	1.00
252_A	327_A	0.522	1.00
376_I	391_T	0.521	1.00
73_K	280_V	0.520	1.00
235_V	254_N	0.518	1.00
100_L	124_V	0.515	1.00
357_Y	361_F	0.515	1.00
43_G	245_T	0.514	1.00
23_Y	26_P	0.514	1.00
151_S	155_R	0.513	1.00
281_L	284_V	0.512	1.00
61_Y	217_G	0.512	1.00
227_I	231_S	0.512	1.00
374_L	381_T	0.510	1.00
351_V	355_H	0.509	1.00
302_G	339_F	0.509	1.00
89_I	92_K	0.509	1.00
34_V	324_Y	0.509	1.00
52_M	56_I	0.504	1.00
98_I	101_I	0.504	1.00
301_G	335_S	0.503	1.00
223_S	226_A	0.502	1.00
43_G	243_G	0.502	1.00
372_S	375_L	0.502	1.00
146_W	150_S	0.501	1.00
86_W	202_K	0.501	1.00
339_F	342_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4lz6A	1	0.9952	100	0.332	Contact Map
3w4tA	1	0.9759	100	0.332	Contact Map
4humA	1	0.9904	100	0.339	Contact Map
3mktA	1	0.988	100	0.35	Contact Map
2cfqA	1	0.8892	61	0.931	Contact Map
3wdoA	1	0.8843	52	0.935	Contact Map
4pypA	1	0.8843	40	0.939	Contact Map
1pw4A	1	0.8916	29.8	0.943	Contact Map
4j05A	3	0.853	26	0.945	Contact Map
3giaA	1	0.4819	24.9	0.945	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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