ADH2 - ECOLI - GREMLIN Contacts

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ADH2 - Probable alcohol dehydrogenase

UniProt:	P37686	Sequences: MAASTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALKAVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLPHGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDFAVLATNALKDACGFTNPIQATHEEIVAIYRAAM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12293
Length:	383 (365)
Sequences:	10583 (7357)
Seq/√Len:	385.1

ECOLI - ADH2 ADHE EUTG YQHD FUCO GLDA YBDH
BACSU - YUGK GBSB YUGJ G1PDH
HALSA - Q9HNB5 Q9HHR2 G1PDH
SULSO - G1PDH Q97VW4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
351_A	376_V	3.899	1.00
355_T	372_H	3.815	1.00
228_P	333_K	3.415	1.00
347_E	380_R	3.238	1.00
290_V	328_R	3.143	1.00
82_K	86_E	3.143	1.00
229_L	236_N	2.908	1.00
75_E	155_E	2.826	1.00
233_D	236_N	2.821	1.00
80_G	107_I	2.754	1.00
49_G	53_K	2.578	1.00
226_N	242_A	2.529	1.00
371_T	374_E	2.518	1.00
346_K	349_D	2.475	1.00
265_M	379_Y	2.407	1.00
16_A	178_S	2.402	1.00
181_I	237_A	2.375	1.00
350_F	376_V	2.361	1.00
67_G	79_A	2.320	1.00
33_R	61_F	2.293	1.00
21_D	24_N	2.266	1.00
199_A	219_A	2.252	1.00
218_K	221_T	2.233	1.00
34_T	91_S	2.187	1.00
175_N	244_A	2.184	1.00
339_G	342_D	2.180	1.00
376_V	380_R	2.177	1.00
18_S	21_D	2.131	1.00
17_D	178_S	2.083	1.00
329_E	333_K	2.052	1.00
195_A	223_I	2.011	1.00
101_H	135_A	1.996	1.00
213_D	299_R	1.972	1.00
292_N	366_N	1.937	1.00
354_A	376_V	1.933	1.00
92_V	104_A	1.929	1.00
196_L	220_V	1.922	1.00
41_M	45_L	1.903	1.00
84_L	131_L	1.891	1.00
224_A	307_M	1.877	1.00
188_T	240_R	1.849	1.00
52_Q	56_E	1.845	1.00
266_A	280_C	1.844	1.00
190_A	279_V	1.835	1.00
353_L	379_Y	1.804	1.00
372_H	376_V	1.797	1.00
78_A	116_D	1.776	1.00
63_V	87_N	1.770	1.00
69_Q	76_N	1.761	1.00
326_A	329_E	1.740	1.00
84_L	111_A	1.733	1.00
49_G	52_Q	1.716	1.00
290_V	381_A	1.713	1.00
186_S	279_V	1.677	1.00
23_M	54_A	1.647	1.00
43_T	66_D	1.638	1.00
354_A	372_H	1.637	1.00
220_V	303_C	1.634	1.00
304_A	323_C	1.624	1.00
20_T	50_D	1.622	1.00
185_K	189_A	1.604	1.00
377_A	381_A	1.593	1.00
76_N	79_A	1.586	1.00
283_V	343_L	1.568	1.00
16_A	237_A	1.549	1.00
180_M	240_R	1.537	1.00
351_A	372_H	1.537	1.00
32_T	90_D	1.526	1.00
232_E	333_K	1.524	1.00
83_L	87_N	1.519	1.00
79_A	82_K	1.518	1.00
228_P	232_E	1.518	1.00
94_S	133_M	1.515	1.00
332_K	338_A	1.499	1.00
192_G	227_L	1.493	1.00
236_N	239_A	1.482	1.00
63_V	83_L	1.481	1.00
53_K	57_E	1.472	1.00
63_V	89_C	1.469	1.00
26_M	91_S	1.467	1.00
377_A	380_R	1.451	1.00
325_N	329_E	1.442	1.00
11_V	25_M	1.441	1.00
56_E	62_S	1.439	1.00
77_V	152_I	1.437	1.00
94_S	104_A	1.423	1.00
115_G	120_Y	1.417	1.00
238_K	242_A	1.413	1.00
16_A	241_E	1.410	1.00
34_T	93_I	1.408	1.00
289_Q	327_I	1.400	1.00
25_M	28_D	1.384	1.00
272_F	352_V	1.377	1.00
265_M	284_L	1.376	1.00
180_M	244_A	1.371	1.00
349_D	352_V	1.369	1.00
275_L	280_C	1.367	1.00
37_V	107_I	1.365	1.00
217_L	302_D	1.363	1.00
178_S	237_A	1.349	1.00
192_G	243_M	1.342	1.00
40_N	44_K	1.342	1.00
352_V	356_N	1.340	1.00
52_Q	62_S	1.332	1.00
78_A	82_K	1.330	1.00
77_V	103_C	1.319	1.00
83_L	86_E	1.310	1.00
33_R	63_V	1.307	1.00
290_V	321_E	1.303	1.00
108_A	130_Q	1.293	1.00
116_D	119_D	1.287	1.00
134_I	172_L	1.281	1.00
81_L	110_V	1.280	1.00
84_L	89_C	1.277	1.00
74_T	78_A	1.277	1.00
374_E	377_A	1.261	1.00
69_Q	73_T	1.259	1.00
355_T	359_K	1.256	1.00
115_G	119_D	1.252	1.00
25_M	172_L	1.251	1.00
188_T	234_G	1.249	1.00
193_M	331_A	1.248	1.00
293_S	321_E	1.247	1.00
91_S	134_I	1.246	1.00
229_L	233_D	1.242	1.00
226_N	229_L	1.226	1.00
50_D	178_S	1.225	1.00
37_V	68_T	1.224	1.00
37_V	104_A	1.212	1.00
185_K	231_V	1.211	1.00
13_V	25_M	1.202	1.00
12_N	248_F	1.198	1.00
373_E	376_V	1.197	1.00
291_F	374_E	1.196	1.00
217_L	306_A	1.192	1.00
225_E	242_A	1.191	1.00
35_L	89_C	1.191	1.00
321_E	325_N	1.187	1.00
223_I	243_M	1.185	1.00
92_V	108_A	1.176	1.00
140_A	188_T	1.176	1.00
19_L	136_I	1.172	1.00
193_M	336_I	1.169	1.00
53_K	56_E	1.165	1.00
261_Y	370_A	1.159	1.00
84_L	107_I	1.159	1.00
33_R	87_N	1.157	1.00
82_K	85_K	1.154	1.00
35_L	84_L	1.154	1.00
303_C	323_C	1.150	1.00
226_N	239_A	1.143	1.00
73_T	76_N	1.141	1.00
178_S	181_I	1.134	1.00
188_T	230_A	1.134	1.00
352_V	355_T	1.128	1.00
183_M	187_L	1.127	1.00
17_D	20_T	1.114	1.00
18_S	174_V	1.111	1.00
15_G	18_S	1.107	1.00
217_L	221_T	1.104	1.00
294_K	368_I	1.102	1.00
39_D	42_L	1.102	1.00
104_A	133_M	1.101	1.00
22_A	51_V	1.100	1.00
26_M	134_I	1.097	1.00
35_L	83_L	1.092	1.00
302_D	305_A	1.090	1.00
27_A	58_R	1.085	1.00
218_K	222_M	1.079	1.00
185_K	232_E	1.076	1.00
13_V	21_D	1.075	1.00
358_L	372_H	1.069	1.00
262_V	285_L	1.064	1.00
154_D	157_R	1.058	1.00
202_A	253_A	1.057	1.00
255_N	259_L	1.055	1.00
146_M	248_F	1.054	1.00
81_L	85_K	1.053	1.00
214_A	218_K	1.052	1.00
287_H	381_A	1.049	1.00
301_R	319_G	1.049	1.00
33_R	88_N	1.047	1.00
177_S	241_E	1.044	1.00
41_M	44_K	1.044	1.00
51_V	95_L	1.039	1.00
265_M	375_I	1.036	1.00
373_E	377_A	1.033	1.00
16_A	181_I	1.030	1.00
293_S	320_A	1.030	1.00
262_V	281_N	1.029	1.00
264_A	363_G	1.026	1.00
40_N	66_D	1.024	1.00
199_A	250_A	1.022	1.00
71_N	274_N	1.021	1.00
74_T	155_E	1.020	1.00
230_A	234_G	1.013	1.00
36_I	62_S	1.010	1.00
75_E	156_A	1.007	1.00
135_A	170_P	1.005	1.00
149_F	164_V	0.999	1.00
301_R	320_A	0.998	1.00
43_T	48_A	0.994	1.00
132_P	171_L	0.993	1.00
42_L	45_L	0.990	1.00
295_V	368_I	0.985	1.00
19_L	50_D	0.984	1.00
229_L	238_K	0.982	1.00
146_M	173_S	0.978	1.00
291_F	368_I	0.972	1.00
266_A	270_G	0.971	1.00
38_T	66_D	0.971	1.00
189_A	231_V	0.964	1.00
193_M	282_A	0.964	1.00
190_A	276_P	0.958	1.00
322_A	325_N	0.956	1.00
36_I	48_A	0.954	1.00
68_T	103_C	0.946	1.00
24_N	58_R	0.936	1.00
272_F	356_N	0.935	1.00
17_D	176_D	0.934	1.00
56_E	61_F	0.930	1.00
43_T	49_G	0.921	1.00
305_A	319_G	0.919	1.00
94_S	135_A	0.915	1.00
213_D	216_A	0.914	1.00
215_C	249_L	0.912	1.00
101_H	137_N	0.908	1.00
203_Y	302_D	0.905	1.00
202_A	213_D	0.904	1.00
186_S	190_A	0.903	1.00
338_A	342_D	0.902	1.00
73_T	155_E	0.899	1.00
34_T	90_D	0.898	1.00
255_N	258_S	0.897	1.00
231_V	334_V	0.892	1.00
231_V	335_D	0.887	1.00
48_A	52_Q	0.883	1.00
219_A	250_A	0.878	1.00
65_Y	80_G	0.878	1.00
19_L	179_L	0.877	1.00
221_T	305_A	0.875	1.00
19_L	178_S	0.871	1.00
11_V	28_D	0.871	1.00
94_S	101_H	0.871	1.00
350_F	380_R	0.870	1.00
50_D	54_A	0.869	1.00
318_E	322_A	0.867	1.00
196_L	223_I	0.866	1.00
351_A	355_T	0.865	1.00
15_G	21_D	0.860	1.00
229_L	239_A	0.860	1.00
354_A	358_L	0.860	1.00
108_A	131_L	0.860	1.00
268_Q	379_Y	0.859	1.00
43_T	52_Q	0.858	1.00
135_A	173_S	0.857	1.00
36_I	52_Q	0.856	1.00
197_T	285_L	0.854	1.00
356_N	359_K	0.854	1.00
261_Y	288_V	0.854	1.00
200_I	220_V	0.854	1.00
221_T	225_E	0.853	1.00
245_Y	249_L	0.852	1.00
234_G	240_R	0.852	1.00
297_A	317_A	0.848	1.00
113_N	128_K	0.847	1.00
42_L	48_A	0.846	1.00
224_A	326_A	0.845	1.00
222_M	242_A	0.841	1.00
273_Y	349_D	0.838	1.00
81_L	107_I	0.838	1.00
101_H	144_S	0.837	1.00
158_H	274_N	0.836	1.00
140_A	244_A	0.830	1.00
23_M	57_E	0.828	1.00
200_I	303_C	0.826	1.00
81_L	111_A	0.822	1.00
196_L	200_I	0.822	1.00
133_M	171_L	0.820	1.00
111_A	131_L	0.813	1.00
108_A	133_M	0.813	1.00
222_M	246_A	0.813	1.00
214_A	221_T	0.811	1.00
309_V	322_A	0.810	1.00
50_D	53_K	0.810	1.00
189_A	336_I	0.810	1.00
109_L	168_V	0.809	1.00
181_I	235_S	0.809	1.00
37_V	100_P	0.802	1.00
230_A	239_A	0.802	1.00
69_Q	79_A	0.800	1.00
180_M	188_T	0.799	1.00
40_N	67_G	0.799	1.00
73_T	274_N	0.799	1.00
337_P	343_L	0.798	1.00
103_C	107_I	0.798	1.00
289_Q	323_C	0.791	1.00
40_N	43_T	0.791	1.00
291_F	370_A	0.791	1.00
263_H	277_H	0.790	1.00
256_N	259_L	0.789	1.00
50_D	179_L	0.788	1.00
148_R	166_K	0.784	1.00
229_L	232_E	0.783	1.00
34_T	60_I	0.782	1.00
228_P	231_V	0.781	1.00
223_I	246_A	0.780	1.00
337_P	342_D	0.779	1.00
38_T	64_I	0.779	1.00
303_C	327_I	0.778	1.00
204_V	289_Q	0.778	1.00
19_L	176_D	0.776	1.00
21_D	25_M	0.776	1.00
287_H	290_V	0.775	1.00
358_L	375_I	0.772	1.00
20_T	54_A	0.766	1.00
328_R	332_K	0.765	1.00
65_Y	79_A	0.764	1.00
22_A	136_I	0.763	1.00
284_L	378_I	0.763	1.00
202_A	216_A	0.763	1.00
25_M	29_Y	0.758	1.00
226_N	243_M	0.758	1.00
77_V	106_G	0.755	1.00
329_E	332_K	0.753	1.00
185_K	234_G	0.748	1.00
267_H	360_D	0.747	1.00
46_G	49_G	0.744	1.00
261_Y	375_I	0.743	1.00
293_S	297_A	0.741	1.00
226_N	238_K	0.738	1.00
224_A	228_P	0.736	1.00
301_R	305_A	0.735	1.00
23_M	58_R	0.734	1.00
225_E	228_P	0.734	1.00
238_K	241_E	0.731	1.00
183_M	191_T	0.730	1.00
199_A	216_A	0.729	1.00
34_T	62_S	0.725	1.00
268_Q	356_N	0.725	1.00
75_E	79_A	0.722	1.00
32_T	61_F	0.720	1.00
27_A	32_T	0.720	1.00
35_L	87_N	0.716	1.00
294_K	317_A	0.712	1.00
203_Y	217_L	0.711	1.00
26_M	93_I	0.710	1.00
185_K	335_D	0.707	1.00
289_Q	300_L	0.704	1.00
260_G	267_H	0.702	1.00
266_A	281_N	0.701	1.00
94_S	100_P	0.699	1.00
351_A	354_A	0.699	1.00
236_N	240_R	0.698	1.00
56_E	59_N	0.698	1.00
221_T	302_D	0.697	0.99
39_D	45_L	0.696	0.99
207_A	258_S	0.695	0.99
327_I	331_A	0.693	0.99
13_V	18_S	0.691	0.99
140_A	180_M	0.691	0.99
226_N	230_A	0.691	0.99
350_F	379_Y	0.691	0.99
345_V	350_F	0.690	0.99
291_F	371_T	0.688	0.99
78_A	81_L	0.687	0.99
279_V	337_P	0.687	0.99
297_A	320_A	0.683	0.99
194_D	277_H	0.683	0.99
208_A	299_R	0.683	0.99
33_R	90_D	0.681	0.99
19_L	51_V	0.680	0.99
269_L	280_C	0.679	0.99
206_I	369_Q	0.679	0.99
79_A	83_L	0.677	0.99
42_L	47_M	0.677	0.99
309_V	326_A	0.673	0.99
286_P	331_A	0.673	0.99
52_Q	64_I	0.672	0.99
332_K	342_D	0.671	0.99
330_L	334_V	0.668	0.99
322_A	326_A	0.667	0.99
14_I	241_E	0.666	0.99
328_R	338_A	0.666	0.99
221_T	306_A	0.663	0.99
290_V	324_I	0.659	0.99
197_T	281_N	0.658	0.99
269_L	379_Y	0.657	0.99
225_E	229_L	0.655	0.99
217_L	305_A	0.655	0.99
347_E	350_F	0.650	0.99
303_C	307_M	0.650	0.99
197_T	262_V	0.649	0.99
254_F	259_L	0.649	0.99
258_S	365_T	0.648	0.99
220_V	224_A	0.648	0.99
175_N	248_F	0.647	0.99
230_A	243_M	0.647	0.99
119_D	124_D	0.647	0.99
208_A	213_D	0.646	0.99
106_G	150_C	0.646	0.99
368_I	374_E	0.646	0.99
77_V	107_I	0.644	0.99
54_A	57_E	0.644	0.99
106_G	152_I	0.643	0.99
113_N	130_Q	0.642	0.99
290_V	293_S	0.642	0.99
150_C	163_I	0.638	0.99
267_H	270_G	0.636	0.99
218_K	249_L	0.635	0.99
146_M	252_M	0.635	0.99
35_L	63_V	0.631	0.99
71_N	99_S	0.629	0.99
370_A	375_I	0.628	0.99
19_L	54_A	0.627	0.99
47_M	95_L	0.627	0.99
275_L	343_L	0.626	0.99
289_Q	324_I	0.625	0.99
192_G	334_V	0.625	0.99
276_P	279_V	0.624	0.99
269_L	340_L	0.622	0.99
24_N	28_D	0.620	0.99
310_N	319_G	0.615	0.99
204_V	300_L	0.611	0.99
370_A	378_I	0.611	0.99
20_T	57_E	0.610	0.99
110_V	114_G	0.610	0.99
26_M	60_I	0.608	0.99
302_D	306_A	0.608	0.99
270_G	280_C	0.606	0.99
33_R	89_C	0.602	0.99
237_A	241_E	0.602	0.99
200_I	285_L	0.601	0.99
23_M	27_A	0.601	0.99
39_D	44_K	0.600	0.98
200_I	323_C	0.599	0.98
193_M	334_V	0.599	0.98
84_L	92_V	0.597	0.98
147_T	251_G	0.596	0.98
370_A	374_E	0.596	0.98
114_G	120_Y	0.595	0.98
14_I	245_Y	0.594	0.98
319_G	322_A	0.594	0.98
264_A	362_C	0.592	0.98
304_A	309_V	0.591	0.98
222_M	249_L	0.590	0.98
68_T	71_N	0.589	0.98
49_G	56_E	0.589	0.98
265_M	357_A	0.589	0.98
134_I	174_V	0.589	0.98
137_N	175_N	0.587	0.98
78_A	110_V	0.587	0.98
109_L	126_S	0.584	0.98
29_Y	134_I	0.584	0.98
198_H	277_H	0.583	0.98
205_S	365_T	0.582	0.98
197_T	260_G	0.582	0.98
37_V	80_G	0.582	0.98
194_D	263_H	0.582	0.98
206_I	365_T	0.582	0.98
241_E	245_Y	0.577	0.98
20_T	178_S	0.576	0.98
317_A	321_E	0.574	0.98
290_V	325_N	0.574	0.98
160_K	277_H	0.574	0.98
12_N	173_S	0.573	0.98
130_Q	171_L	0.573	0.98
282_A	331_A	0.573	0.98
151_I	194_D	0.572	0.98
137_N	247_Q	0.571	0.98
22_A	54_A	0.570	0.98
261_Y	264_A	0.570	0.98
38_T	100_P	0.568	0.98
129_P	167_H	0.568	0.98
51_V	54_A	0.566	0.98
200_I	289_Q	0.566	0.98
13_V	172_L	0.566	0.98
24_N	27_A	0.565	0.98
325_N	328_R	0.565	0.98
281_N	284_L	0.562	0.98
148_R	255_N	0.561	0.98
192_G	223_I	0.561	0.98
118_R	154_D	0.558	0.98
122_G	125_R	0.557	0.98
177_S	237_A	0.557	0.98
198_H	250_A	0.557	0.98
149_F	162_A	0.556	0.98
297_A	300_L	0.556	0.98
16_A	238_K	0.555	0.98
203_Y	299_R	0.554	0.97
47_M	179_L	0.551	0.97
83_L	89_C	0.548	0.97
26_M	55_L	0.547	0.97
177_S	244_A	0.546	0.97
78_A	117_I	0.546	0.97
93_I	134_I	0.545	0.97
92_V	107_I	0.544	0.97
71_N	270_G	0.544	0.97
261_Y	366_N	0.543	0.97
259_L	362_C	0.543	0.97
35_L	65_Y	0.543	0.97
106_G	163_I	0.536	0.97
13_V	174_V	0.536	0.97
23_M	26_M	0.536	0.97
226_N	246_A	0.534	0.97
76_N	103_C	0.533	0.97
69_Q	274_N	0.532	0.97
354_A	375_I	0.532	0.97
269_L	275_L	0.531	0.97
272_F	353_L	0.530	0.97
45_L	48_A	0.529	0.97
300_L	304_A	0.528	0.97
102_D	277_H	0.528	0.97
162_A	362_C	0.527	0.97
317_A	320_A	0.527	0.97
181_I	240_R	0.526	0.97
220_V	306_A	0.522	0.96
331_A	336_I	0.522	0.96
279_V	336_I	0.522	0.96
20_T	53_K	0.522	0.96
22_A	174_V	0.522	0.96
260_G	365_T	0.520	0.96
259_L	267_H	0.518	0.96
77_V	81_L	0.518	0.96
279_V	343_L	0.517	0.96
48_A	95_L	0.517	0.96
91_S	132_P	0.516	0.96
9_P	169_T	0.516	0.96
356_N	360_D	0.514	0.96
305_A	308_G	0.514	0.96
320_A	323_C	0.513	0.96
36_I	95_L	0.513	0.96
357_A	379_Y	0.512	0.96
37_V	103_C	0.511	0.96
130_Q	167_H	0.511	0.96
118_R	156_A	0.509	0.96
331_A	334_V	0.508	0.96
286_P	328_R	0.508	0.96
227_L	330_L	0.508	0.96
75_E	78_A	0.508	0.96
300_L	323_C	0.508	0.96
43_T	64_I	0.508	0.96
84_L	87_N	0.507	0.96
92_V	131_L	0.505	0.96
265_M	268_Q	0.505	0.96
204_V	288_V	0.502	0.96
102_D	278_G	0.501	0.95
187_L	191_T	0.500	0.95

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ox4A	2	0.9974	100	0.079	Contact Map
3bfjA	5	0.9948	100	0.08	Contact Map
1rrmA	2	0.9922	100	0.104	Contact Map
1vljA	2	0.9922	100	0.105	Contact Map
4fr2A	2	0.9948	100	0.105	Contact Map
4qgsA	2	0.9661	100	0.141	Contact Map
3zdrA	2	0.9817	100	0.141	Contact Map
1o2dA	1	0.9321	100	0.167	Contact Map
3w5sA	2	0.8956	100	0.193	Contact Map
3iv7A	2	0.893	100	0.194	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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