GREMLIN Database
MDTF - Multidrug resistance protein MdtF
UniProt: P37637 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12241
Length: 1037 (997)
Sequences: 15758 (10055)
Seq/√Len: 318.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
957_T960_E4.1201.00
244_E247_G4.0711.00
62_T88_A3.9631.00
309_E312_R3.9461.00
311_N314_S3.9191.00
247_G263_R3.9081.00
47_A88_A3.7831.00
728_N806_E3.6291.00
913_A1007_G3.5791.00
589_L623_G3.4901.00
528_S1018_Y3.3801.00
304_R334_E3.2661.00
150_N153_D3.1511.00
248_K263_R3.1221.00
584_N587_K3.1021.00
426_P429_E3.0791.00
3_N7_D3.0421.00
530_R963_I3.0241.00
75_L92_L2.9731.00
188_L203_V2.9581.00
758_N769_V2.9541.00
280_R593_T2.8751.00
729_V734_A2.8461.00
730_N804_S2.8351.00
169_T305_A2.8241.00
689_G692_K2.8231.00
62_T82_S2.8221.00
734_A744_I2.8131.00
692_K695_Q2.7691.00
58_E821_P2.7481.00
193_L198_L2.7401.00
165_P309_E2.7201.00
142_F158_V2.6591.00
307_K328_D2.6511.00
247_G268_V2.6461.00
76_M93_T2.6021.00
262_L268_V2.5941.00
282_N606_S2.5891.00
895_I948_V2.5821.00
740_A743_D2.5751.00
345_V349_I2.5621.00
251_L265_V2.5271.00
703_L706_Q2.5161.00
154_I321_L2.4791.00
243_P247_G2.4751.00
378_G480_L2.4311.00
314_S322_K2.4291.00
586_T590_Q2.4171.00
189_D192_K2.3961.00
696_A853_V2.3831.00
526_T967_R2.3351.00
704_A842_M2.3301.00
76_M95_E2.3241.00
833_K841_F2.3201.00
424_K433_K2.3181.00
701_L705_A2.3011.00
157_Y321_L2.3011.00
695_Q699_E2.3011.00
638_E641_S2.2951.00
917_R1003_T2.2791.00
730_N733_K2.2741.00
956_K964_E2.2681.00
382_I476_S2.2431.00
186_I207_I2.2251.00
631_P634_E2.2081.00
301_D305_A2.1911.00
246_F262_L2.1821.00
204_I771_V2.1761.00
572_T627_I2.1631.00
188_L200_P2.1501.00
782_D785_N2.1501.00
182_Y270_L2.1301.00
600_E649_A2.1291.00
729_V744_I2.1121.00
187_W269_E2.0941.00
419_V437_Q2.0751.00
834_S837_D2.0541.00
728_N804_S2.0421.00
701_L716_P2.0271.00
962_I1025_V2.0221.00
534_R959_I2.0211.00
711_V714_V2.0161.00
252_K255_Q2.0131.00
342_K346_E2.0121.00
65_I69_M2.0121.00
988_V1006_M2.0051.00
798_P801_A2.0051.00
144_S148_S2.0031.00
684_D700_L1.9941.00
727_V803_S1.9931.00
713_G828_E1.9891.00
576_L580_A1.9841.00
739_V789_V1.9801.00
418_R422_E1.9661.00
726_K808_T1.9651.00
785_N800_S1.9591.00
65_I90_I1.9491.00
700_L846_V1.9441.00
429_E433_K1.9371.00
707_S841_F1.9261.00
601_K645_I1.9211.00
603_N637_G1.9001.00
280_R586_T1.8911.00
242_T245_E1.8881.00
525_Y966_A1.8831.00
415_N437_Q1.8761.00
545_L549_G1.8651.00
10_V887_A1.8651.00
55_Q59_D1.8601.00
531_S535_C1.8601.00
371_A484_V1.8571.00
698_N701_L1.8521.00
57_V61_V1.8511.00
605_Q630_K1.8491.00
520_K524_H1.8321.00
305_A308_E1.8261.00
596_Y646_I1.8251.00
450_S479_L1.8121.00
552_V555_L1.8111.00
149_L320_S1.8071.00
7_D428_K1.8061.00
193_L265_V1.7971.00
535_C538_R1.7961.00
520_K523_Q1.7961.00
190_P777_F1.7951.00
162_I313_L1.7851.00
780_L783_N1.7791.00
843_A865_A1.7791.00
244_E248_K1.7771.00
637_G645_I1.7731.00
959_I1025_V1.7711.00
591_Q594_D1.7711.00
183_A770_Y1.7691.00
697_R823_M1.7611.00
701_L714_V1.7551.00
536_T1025_V1.7491.00
8_R891_E1.7481.00
696_A699_E1.7451.00
62_T80_S1.7411.00
204_I208_K1.7321.00
69_M92_L1.7301.00
267_R774_G1.7251.00
589_L609_T1.7101.00
24_G28_M1.7061.00
181_E273_E1.7051.00
147_G284_K1.6961.00
843_A847_A1.6941.00
92_L107_V1.6941.00
540_M544_L1.6911.00
711_V838_A1.6911.00
919_L1003_T1.6871.00
29_N384_S1.6831.00
531_S534_R1.6671.00
678_F827_G1.6651.00
733_K736_A1.6621.00
388_F472_I1.6591.00
69_M90_I1.6561.00
841_F844_D1.6551.00
551_A555_L1.6541.00
739_V802_Y1.6441.00
65_I114_A1.6301.00
301_D304_R1.6291.00
570_F627_I1.6291.00
198_L202_D1.6261.00
726_K806_E1.6251.00
526_T530_R1.6201.00
304_R308_E1.6161.00
199_V202_D1.6161.00
211_N758_N1.6141.00
241_Q245_E1.6131.00
644_A648_R1.6111.00
307_K325_Y1.6071.00
20_M377_L1.6011.00
601_K649_A1.6001.00
415_N418_R1.5981.00
841_F845_L1.5941.00
3_N432_H1.5911.00
595_Y649_A1.5891.00
774_G777_F1.5871.00
74_G98_T1.5841.00
647_Q713_G1.5811.00
338_Q342_K1.5791.00
82_S88_A1.5781.00
744_I802_Y1.5731.00
833_K837_D1.5731.00
734_A739_V1.5671.00
590_Q594_D1.5661.00
574_A589_L1.5661.00
419_V424_K1.5641.00
559_T836_G1.5601.00
840_K843_A1.5581.00
189_D267_R1.5571.00
694_T698_N1.5521.00
240_L246_F1.5511.00
418_R968_M1.5461.00
143_I324_V1.5441.00
528_S531_S1.5431.00
645_I649_A1.5421.00
595_Y652_A1.5391.00
902_V940_A1.5321.00
585_T623_G1.5261.00
883_F896_P1.5241.00
386_V476_S1.5221.00
547_C551_A1.5191.00
26_A381_A1.5141.00
248_K261_L1.5101.00
479_L483_F1.5071.00
757_V771_V1.5051.00
574_A592_V1.5031.00
596_Y604_V1.5031.00
416_V493_C1.5031.00
297_A302_T1.5021.00
188_L193_L1.5001.00
709_N841_F1.4981.00
207_I249_I1.4961.00
419_V422_E1.4931.00
702_S706_Q1.4801.00
699_E702_S1.4791.00
703_L845_L1.4771.00
408_D938_K1.4771.00
472_I476_S1.4741.00
78_M92_L1.4731.00
47_A62_T1.4701.00
576_L588_V1.4671.00
99_S102_I1.4661.00
61_V122_V1.4651.00
192_K196_Y1.4541.00
205_S209_V1.4501.00
952_Q1024_F1.4421.00
592_V650_M1.4411.00
684_D693_L1.4381.00
234_I752_F1.4381.00
692_K696_A1.4371.00
379_T477_S1.4341.00
727_V805_T1.4311.00
307_K311_N1.4281.00
339_E342_K1.4281.00
47_A122_V1.4281.00
172_V291_I1.4281.00
524_H527_D1.4271.00
328_D331_P1.4211.00
540_M1026_V1.4181.00
756_Y768_K1.4151.00
201_S205_S1.4141.00
14_V884_L1.4121.00
202_D205_S1.4111.00
574_A623_G1.4091.00
630_K634_E1.4061.00
34_Q567_Q1.4021.00
580_A584_N1.3991.00
641_S645_I1.3971.00
98_T103_A1.3961.00
43_I107_V1.3961.00
603_N630_K1.3921.00
205_S208_K1.3901.00
959_I963_I1.3881.00
790_R796_M1.3851.00
653_L656_I1.3841.00
863_Q866_L1.3841.00
412_V435_M1.3811.00
948_V953_K1.3781.00
141_A281_Y1.3691.00
47_A65_I1.3671.00
791_N795_T1.3661.00
590_Q593_T1.3651.00
699_E703_L1.3611.00
163_K167_S1.3591.00
240_L249_I1.3581.00
199_V790_R1.3571.00
789_V802_Y1.3571.00
57_V82_S1.3551.00
66_E816_R1.3541.00
349_I353_L1.3541.00
261_L264_D1.3531.00
202_D790_R1.3521.00
604_V627_I1.3511.00
250_L259_Q1.3511.00
594_D597_L1.3511.00
837_D840_K1.3461.00
840_K844_D1.3421.00
352_F369_T1.3421.00
45_V69_M1.3411.00
317_F323_T1.3401.00
536_T1029_H1.3391.00
209_V735_E1.3381.00
593_T597_L1.3341.00
382_I386_V1.3331.00
981_I1006_M1.3301.00
697_R716_P1.3291.00
649_A652_A1.3291.00
192_K195_K1.3241.00
53_D56_T1.3191.00
170_A305_A1.3181.00
278_V586_T1.3171.00
305_A309_E1.3161.00
115_M124_Q1.3111.00
279_A288_G1.3111.00
587_K591_Q1.3091.00
949_E953_K1.3051.00
549_G553_L1.3031.00
63_Q816_R1.3021.00
19_M378_G1.3021.00
981_I1010_F1.2981.00
526_T964_E1.2961.00
595_Y601_K1.2951.00
22_A381_A1.2931.00
69_M107_V1.2931.00
702_S705_A1.2911.00
611_G623_G1.2911.00
77_Y818_N1.2911.00
548_A552_V1.2881.00
607_V625_A1.2861.00
524_H528_S1.2851.00
570_F643_T1.2831.00
936_S1012_A1.2821.00
541_V545_L1.2811.00
374_V488_L1.2791.00
58_E816_R1.2791.00
45_V92_L1.2791.00
560_S920_S1.2771.00
77_Y93_T1.2761.00
112_Q115_M1.2761.00
597_L607_V1.2761.00
739_V792_A1.2681.00
245_E248_K1.2681.00
144_S147_G1.2641.00
202_D252_K1.2631.00
960_E964_E1.2591.00
686_G853_V1.2551.00
4_Y11_F1.2511.00
711_V827_G1.2511.00
707_S845_L1.2501.00
846_V855_Y1.2501.00
683_L817_Y1.2481.00
958_P962_I1.2481.00
13_W893_W1.2481.00
27_I341_F1.2471.00
552_V556_R1.2421.00
947_A962_I1.2391.00
910_A929_L1.2371.00
156_D767_K1.2361.00
43_I104_Q1.2361.00
914_T925_F1.2361.00
193_L203_V1.2341.00
74_G95_E1.2341.00
6_I432_H1.2311.00
165_P316_Y1.2291.00
644_A647_Q1.2281.00
952_Q1028_E1.2221.00
601_K642_V1.2211.00
142_F162_I1.2201.00
645_I648_R1.2201.00
637_G642_V1.2171.00
309_E313_L1.2141.00
69_M78_M1.2121.00
3_N436_G1.2111.00
6_I491_A1.2111.00
419_V433_K1.2101.00
149_L153_D1.2101.00
724_M810_G1.2091.00
556_R915_D1.2071.00
433_K436_G1.2061.00
26_A384_S1.2051.00
783_N786_Q1.2051.00
527_D530_R1.2041.00
642_V645_I1.2041.00
527_D531_S1.2011.00
187_W267_R1.2011.00
216_G236_V1.1991.00
956_K960_E1.1991.00
576_L585_T1.1991.00
541_V548_A1.1981.00
157_Y161_N1.1971.00
709_N833_K1.1971.00
415_N946_F1.1961.00
304_R307_K1.1951.00
57_V88_A1.1921.00
203_V265_V1.1911.00
703_L848_K1.1911.00
247_G267_R1.1891.00
589_L611_G1.1861.00
310_L323_T1.1861.00
423_D433_K1.1831.00
532_L1022_V1.1831.00
526_T963_I1.1831.00
985_L1006_M1.1821.00
65_I111_L1.1801.00
308_E312_R1.1791.00
685_N822_S1.1741.00
142_F323_T1.1741.00
140_A325_Y1.1701.00
685_N856_S1.1681.00
218_Q231_N1.1661.00
172_V302_T1.1641.00
684_D696_A1.1611.00
532_L539_Y1.1611.00
647_Q651_I1.1601.00
75_L78_M1.1591.00
591_Q595_Y1.1581.00
974_L978_L1.1571.00
603_N642_V1.1511.00
58_E814_L1.1491.00
311_N315_A1.1481.00
388_F394_T1.1481.00
700_L825_I1.1451.00
68_N114_A1.1441.00
919_L999_N1.1391.00
339_E998_Q1.1391.00
76_M866_L1.1391.00
110_K113_L1.1381.00
143_I322_K1.1381.00
820_I854_G1.1371.00
250_L261_L1.1371.00
588_V591_Q1.1361.00
605_Q628_S1.1361.00
149_L321_L1.1341.00
379_T476_S1.1331.00
656_I659_A1.1331.00
570_F646_I1.1301.00
594_D600_E1.1301.00
166_L175_V1.1291.00
20_M24_G1.1261.00
858_T862_Y1.1251.00
196_Y260_V1.1241.00
446_A482_V1.1241.00
165_P313_L1.1211.00
817_Y858_T1.1211.00
49_Y52_A1.1181.00
964_E967_R1.1161.00
206_Q249_I1.1161.00
303_S330_T1.1141.00
707_S844_D1.1141.00
704_A711_V1.1101.00
529_T533_L1.1101.00
370_I492_L1.1081.00
749_S755_S1.1081.00
538_R541_V1.1061.00
16_A488_L1.1051.00
523_Q527_D1.1031.00
948_V952_Q1.1031.00
447_V885_A1.0951.00
298_N301_D1.0951.00
759_D768_K1.0951.00
5_F12_A1.0931.00
248_K732_A1.0931.00
648_R651_I1.0921.00
449_L938_K1.0911.00
742_S746_Q1.0891.00
905_L1015_L1.0881.00
262_L266_A1.0851.00
829_A838_A1.0831.00
596_Y625_A1.0821.00
11_F888_A1.0821.00
334_E338_Q1.0811.00
593_T609_T1.0801.00
869_N872_P1.0791.00
750_T755_S1.0791.00
560_S922_D1.0741.00
772_Q778_R1.0731.00
692_K853_V1.0731.00
862_Y866_L1.0711.00
698_N702_S1.0711.00
493_C497_L1.0701.00
235_I724_M1.0681.00
175_V289_I1.0621.00
519_E523_Q1.0611.00
731_A741_L1.0611.00
81_T91_T1.0601.00
415_N419_V1.0601.00
79_S93_T1.0601.00
922_D925_F1.0571.00
788_Y796_M1.0561.00
445_I482_V1.0531.00
308_E311_N1.0531.00
428_K432_H1.0521.00
155_A180_S1.0521.00
115_M123_Q1.0511.00
185_R772_Q1.0501.00
201_S743_D1.0501.00
314_S323_T1.0481.00
66_E80_S1.0481.00
312_R315_A1.0471.00
78_M819_G1.0451.00
186_I757_V1.0451.00
842_M857_W1.0441.00
587_K590_Q1.0441.00
140_A323_T1.0441.00
978_L982_L1.0431.00
183_A273_E1.0421.00
954_E964_E1.0421.00
949_E954_E1.0391.00
68_N113_L1.0391.00
138_M306_V1.0351.00
45_V65_I1.0351.00
261_L732_A1.0341.00
80_S816_R1.0341.00
543_Y1019_F1.0341.00
913_A1003_T1.0321.00
142_F154_I1.0321.00
970_L974_L1.0311.00
696_A849_L1.0301.00
570_F629_L1.0291.00
532_L1018_Y1.0291.00
912_L916_L1.0281.00
98_T106_Q1.0271.00
108_Q112_Q1.0241.00
705_A714_V1.0231.00
786_Q800_S1.0221.00
187_W774_G1.0211.00
429_E432_H1.0201.00
371_A489_T1.0171.00
838_A841_F1.0161.00
639_E643_T1.0141.00
977_S981_I1.0121.00
251_L260_V1.0121.00
890_Y941_I1.0111.00
371_A409_A1.0101.00
691_E694_T1.0071.00
417_E421_A1.0071.00
246_F268_V1.0071.00
977_S1013_T1.0041.00
946_F968_M1.0011.00
444_G885_A1.0001.00
591_Q653_L1.0001.00
280_R590_Q0.9991.00
981_I1009_M0.9981.00
537_G541_V0.9971.00
682_L704_A0.9961.00
592_V653_L0.9961.00
542_V549_G0.9951.00
30_L380_F0.9941.00
420_I427_P0.9921.00
640_N644_A0.9921.00
681_E824_E0.9911.00
382_I480_L0.9901.00
415_N438_I0.9871.00
214_I745_N0.9871.00
637_G641_S0.9871.00
46_S87_N0.9861.00
163_K175_V0.9851.00
601_K646_I0.9841.00
534_R537_G0.9831.00
596_Y627_I0.9831.00
367_I492_L0.9821.00
548_A551_A0.9821.00
439_Q443_V0.9811.00
553_L912_L0.9811.00
20_M374_V0.9801.00
303_S307_K0.9791.00
572_T596_Y0.9791.00
360_Q515_N0.9791.00
102_I106_Q0.9771.00
444_G889_L0.9771.00
370_I488_L0.9761.00
427_P431_T0.9741.00
581_T584_N0.9731.00
641_S644_A0.9701.00
48_T87_N0.9701.00
80_S90_I0.9701.00
725_F781_P0.9691.00
537_G1026_V0.9681.00
216_G748_I0.9661.00
207_I757_V0.9661.00
533_L1025_V0.9661.00
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544_L547_C0.5070.93
10_V13_W0.5070.93
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314_S318_P0.5070.93
573_T622_N0.5070.93
690_H718_G0.5060.93
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683_L824_E0.5050.93
755_S771_V0.5050.93
169_T172_V0.5040.93
348_I369_T0.5040.93
958_P961_A0.5040.93
72_L110_K0.5040.93
210_Q240_L0.5030.93
906_G1020_V0.5020.93
871_A926_Q0.5020.93
604_V646_I0.5020.93
312_R316_Y0.5020.93
16_A19_M0.5010.93
48_T86_G0.5010.93
376_I398_M0.5010.93
639_E642_V0.5010.93
893_W896_P0.5010.93
895_I952_Q0.5000.92
16_A487_S0.5000.92
686_G689_G0.5000.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4k0jA 3 0.9277 100 0.209 Contact Map
4mt1A 3 0.9624 100 0.272 Contact Map
3ne5A 3 0.9595 100 0.276 Contact Map
3w9iA 3 0.9826 100 0.278 Contact Map
4dx5A 3 0.9894 100 0.294 Contact Map
3aqpA 1 0.6673 100 0.724 Contact Map
4r86A 1 0.2797 100 0.747 Contact Map
2ew9A 1 0.1427 83.8 0.981 Contact Map
4n8nA 1 0.0964 77.3 0.982 Contact Map
4q2lA 1 0.0617 67.8 0.983 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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