YHIN - ECOLI - GREMLIN Contacts

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YHIN - Uncharacterized protein YhiN

UniProt:	P37631	Sequences: MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLFCDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLDLNGMTVGCEKLVIATGGLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQDLIAAKSS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12229
Length:	400 (389)
Sequences:	3783 (2833)
Seq/√Len:	143.6

ECOLI - YHIN
BACSU - YTFP

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
256_N	322_T	4.978	1.00
349_L	369_M	3.812	1.00
182_L	356_A	3.685	1.00
78_T	81_D	3.482	1.00
348_E	358_K	3.396	1.00
304_V	313_D	3.303	1.00
5_D	153_E	3.267	1.00
11_A	38_P	3.203	1.00
157_I	368_V	2.892	1.00
387_A	391_A	2.874	1.00
18_C	156_V	2.859	1.00
350_S	355_E	2.845	1.00
30_L	126_R	2.650	1.00
5_D	28_R	2.645	1.00
183_N	348_E	2.639	1.00
254_S	323_D	2.613	1.00
156_V	394_L	2.589	1.00
173_G	368_V	2.565	1.00
225_R	260_D	2.478	1.00
7_I	150_V	2.427	1.00
91_I	113_M	2.414	1.00
182_L	358_K	2.345	1.00
344_V	364_F	2.264	1.00
43_L	111_V	2.263	1.00
52_F	93_W	2.115	1.00
7_I	152_C	2.075	1.00
117_E	120_K	2.068	1.00
183_N	345_D	2.048	1.00
388_W	392_Q	2.040	1.00
7_I	32_I	2.036	1.00
141_F	359_V	2.019	1.00
213_P	223_V	1.993	1.00
38_P	125_F	1.963	1.00
262_D	265_T	1.957	1.00
84_D	88_K	1.947	1.00
82_F	86_V	1.938	1.00
16_M	118_C	1.909	1.00
14_A	365_I	1.891	1.00
133_S	179_Q	1.877	1.00
34_N	130_E	1.847	1.00
82_F	384_W	1.836	1.00
83_I	93_W	1.828	1.00
91_I	110_I	1.825	1.00
108_Q	112_D	1.769	1.00
21_L	391_A	1.762	1.00
332_E	336_T	1.759	1.00
235_L	240_V	1.750	1.00
190_G	341_L	1.746	1.00
22_A	391_A	1.736	1.00
145_L	148_M	1.721	1.00
7_I	143_L	1.706	1.00
32_I	150_V	1.704	1.00
305_S	308_Q	1.702	1.00
105_D	109_Q	1.698	1.00
158_A	365_I	1.689	1.00
23_G	121_G	1.686	1.00
94_H	105_D	1.685	1.00
195_T	330_G	1.672	1.00
276_N	307_K	1.671	1.00
95_E	101_L	1.671	1.00
21_L	24_Q	1.666	1.00
117_E	121_G	1.635	1.00
24_Q	117_E	1.603	1.00
118_C	123_V	1.601	1.00
174_Y	340_T	1.599	1.00
185_L	345_D	1.594	1.00
76_R	389_A	1.593	1.00
188_R	341_L	1.593	1.00
5_D	30_L	1.591	1.00
81_D	84_D	1.575	1.00
173_G	177_A	1.574	1.00
229_L	236_S	1.571	1.00
52_F	86_V	1.568	1.00
73_A	354_M	1.566	1.00
28_R	124_T	1.562	1.00
27_R	394_L	1.557	1.00
254_S	325_R	1.556	1.00
381_Q	385_S	1.555	1.00
21_L	392_Q	1.548	1.00
157_I	364_F	1.539	1.00
87_N	93_W	1.537	1.00
214_S	240_V	1.535	1.00
134_V	155_L	1.533	1.00
355_E	360_P	1.523	1.00
145_L	150_V	1.517	1.00
38_P	127_L	1.515	1.00
206_V	209_G	1.512	1.00
319_S	323_D	1.496	1.00
36_K	128_R	1.489	1.00
161_G	340_T	1.486	1.00
7_I	30_L	1.482	1.00
152_C	155_L	1.479	1.00
23_G	123_V	1.470	1.00
175_K	178_E	1.461	1.00
165_P	335_R	1.460	1.00
71_K	75_A	1.459	1.00
364_F	368_V	1.450	1.00
89_H	117_E	1.448	1.00
39_G	111_V	1.423	1.00
40_R	43_L	1.408	1.00
126_R	150_V	1.404	1.00
391_A	394_L	1.398	1.00
135_A	142_T	1.395	1.00
38_P	115_V	1.390	1.00
69_F	346_T	1.386	1.00
374_W	378_Y	1.385	1.00
194_F	328_P	1.367	1.00
20_A	117_E	1.363	1.00
195_T	332_E	1.355	1.00
144_D	149_T	1.345	1.00
16_M	115_V	1.343	1.00
56_Y	378_Y	1.333	1.00
76_R	392_Q	1.332	1.00
171_P	175_K	1.328	1.00
278_S	281_N	1.314	1.00
13_A	42_I	1.314	1.00
80_W	84_D	1.313	1.00
83_I	101_L	1.309	1.00
17_F	387_A	1.293	1.00
16_M	38_P	1.293	1.00
73_A	389_A	1.292	1.00
79_Q	385_S	1.289	1.00
36_K	40_R	1.286	1.00
133_S	144_D	1.286	1.00
9_I	157_I	1.279	1.00
107_A	111_V	1.278	1.00
115_V	119_E	1.275	1.00
6_A	154_K	1.255	1.00
172_F	176_I	1.241	1.00
112_D	115_V	1.236	1.00
235_L	253_V	1.225	1.00
157_I	177_A	1.225	1.00
257_L	324_W	1.220	1.00
196_L	326_V	1.211	1.00
30_L	124_T	1.199	1.00
104_D	109_Q	1.197	1.00
166_G	335_R	1.195	1.00
190_G	245_S	1.192	1.00
92_A	109_Q	1.189	1.00
389_A	393_D	1.185	1.00
180_F	359_V	1.183	1.00
94_H	104_D	1.180	1.00
190_G	372_T	1.174	1.00
49_R	96_K	1.173	1.00
21_L	387_A	1.171	1.00
235_L	326_V	1.163	1.00
24_Q	121_G	1.161	1.00
231_T	236_S	1.160	1.00
349_L	364_F	1.152	0.99
6_A	156_V	1.151	0.99
228_L	235_L	1.147	0.99
87_N	92_A	1.145	0.99
215_V	223_V	1.144	0.99
126_R	148_M	1.144	0.99
129_S	145_L	1.140	0.99
136_K	359_V	1.140	0.99
194_F	331_T	1.139	0.99
137_D	142_T	1.139	0.99
21_L	388_W	1.137	0.99
53_T	101_L	1.133	0.99
380_F	384_W	1.132	0.99
212_V	239_A	1.124	0.99
154_K	394_L	1.121	0.99
70_C	386_S	1.120	0.99
52_F	110_I	1.120	0.99
233_R	332_E	1.120	0.99
310_N	313_D	1.118	0.99
20_A	121_G	1.117	0.99
129_S	148_M	1.102	0.99
206_V	210_V	1.101	0.99
245_S	372_T	1.100	0.99
11_A	125_F	1.100	0.99
200_L	324_W	1.099	0.99
134_V	176_I	1.099	0.99
86_V	110_I	1.097	0.99
136_K	140_G	1.095	0.99
213_P	225_R	1.094	0.99
354_M	390_C	1.092	0.99
136_K	180_F	1.079	0.99
13_A	380_F	1.072	0.99
349_L	354_M	1.070	0.99
84_D	87_N	1.068	0.99
240_V	253_V	1.067	0.99
82_F	381_Q	1.066	0.99
32_I	126_R	1.064	0.99
64_S	371_V	1.064	0.99
274_H	285_V	1.051	0.99
263_L	319_S	1.048	0.99
30_L	153_E	1.047	0.99
163_S	340_T	1.046	0.99
344_V	368_V	1.046	0.99
355_E	361_G	1.042	0.99
371_V	382_W	1.037	0.99
35_G	40_R	1.034	0.99
197_H	329_N	1.031	0.99
32_I	152_C	1.031	0.99
178_E	186_P	1.026	0.99
77_F	82_F	1.025	0.99
39_G	42_I	1.025	0.99
5_D	27_R	1.014	0.99
204_L	209_G	1.012	0.99
6_A	22_A	1.009	0.99
118_C	125_F	1.005	0.99
89_H	113_M	1.003	0.99
313_D	316_A	0.996	0.99
198_K	327_Q	0.995	0.99
17_F	21_L	0.994	0.98
69_F	351_S	0.992	0.98
382_W	386_S	0.989	0.98
18_C	365_I	0.987	0.98
25_A	392_Q	0.987	0.98
316_A	319_S	0.987	0.98
43_L	108_Q	0.983	0.98
45_S	380_F	0.981	0.98
182_L	348_E	0.977	0.98
390_C	394_L	0.975	0.98
19_S	31_L	0.968	0.98
224_F	242_Q	0.967	0.98
294_R	298_L	0.966	0.98
16_M	39_G	0.965	0.98
42_I	45_S	0.963	0.98
154_K	363_Y	0.963	0.98
369_M	386_S	0.961	0.98
371_V	386_S	0.956	0.98
6_A	27_R	0.953	0.98
188_R	249_P	0.952	0.98
129_S	150_V	0.951	0.98
112_D	116_D	0.942	0.98
346_T	369_M	0.940	0.98
315_Q	319_S	0.939	0.98
209_G	212_V	0.938	0.98
68_H	71_K	0.937	0.98
86_V	114_L	0.937	0.98
208_A	229_L	0.936	0.98
217_T	221_G	0.936	0.98
187_T	340_T	0.936	0.98
135_A	144_D	0.934	0.98
216_I	243_I	0.931	0.98
136_K	139_T	0.926	0.98
86_V	93_W	0.924	0.98
85_L	89_H	0.924	0.98
6_A	394_L	0.923	0.98
195_T	329_N	0.919	0.97
177_A	364_F	0.918	0.97
116_D	119_E	0.917	0.97
287_L	321_L	0.908	0.97
85_L	117_E	0.906	0.97
248_Q	251_E	0.904	0.97
174_Y	187_T	0.898	0.97
26_G	29_V	0.896	0.97
156_V	365_I	0.895	0.97
31_L	118_C	0.894	0.97
192_V	331_T	0.893	0.97
363_Y	393_D	0.892	0.97
13_A	384_W	0.892	0.97
200_L	298_L	0.889	0.97
345_D	348_E	0.889	0.97
203_E	297_Q	0.885	0.97
32_I	129_S	0.883	0.97
53_T	381_Q	0.882	0.97
74_L	78_T	0.882	0.97
271_R	311_V	0.881	0.97
261_V	265_T	0.879	0.97
11_A	33_D	0.873	0.97
348_E	356_A	0.873	0.97
20_A	24_Q	0.871	0.97
162_L	334_Y	0.869	0.96
157_I	176_I	0.866	0.96
385_S	388_W	0.860	0.96
17_F	391_A	0.860	0.96
66_N	346_T	0.857	0.96
365_I	387_A	0.856	0.96
281_N	284_A	0.855	0.96
49_R	105_D	0.853	0.96
57_V	62_Y	0.852	0.96
115_V	125_F	0.852	0.96
83_I	87_N	0.850	0.96
31_L	38_P	0.845	0.96
142_T	149_T	0.842	0.96
55_L	95_E	0.842	0.96
258_L	321_L	0.835	0.96
162_L	187_T	0.835	0.96
21_L	25_A	0.830	0.95
182_L	359_V	0.829	0.95
33_D	127_L	0.824	0.95
194_F	240_V	0.823	0.95
188_R	252_F	0.823	0.95
64_S	70_C	0.820	0.95
230_F	292_V	0.819	0.95
31_L	123_V	0.815	0.95
261_V	269_E	0.815	0.95
356_A	362_L	0.811	0.95
263_L	323_D	0.810	0.95
277_Q	285_V	0.809	0.95
211_A	225_R	0.809	0.95
96_K	100_Q	0.804	0.95
141_F	180_F	0.804	0.95
267_L	314_Q	0.801	0.94
111_V	115_V	0.797	0.94
155_L	361_G	0.796	0.94
16_M	31_L	0.795	0.94
116_D	120_K	0.792	0.94
52_F	101_L	0.792	0.94
98_L	226_E	0.789	0.94
18_C	391_A	0.785	0.94
9_I	368_V	0.784	0.94
204_L	291_L	0.784	0.94
134_V	180_F	0.783	0.94
132_L	144_D	0.783	0.94
50_C	86_V	0.783	0.94
19_S	123_V	0.781	0.94
229_L	238_P	0.780	0.94
214_S	239_A	0.780	0.94
279_L	301_I	0.778	0.94
338_E	375_L	0.776	0.93
173_G	344_V	0.774	0.93
28_R	153_E	0.774	0.93
34_N	172_F	0.772	0.93
356_A	364_F	0.768	0.93
209_G	228_L	0.765	0.93
66_N	69_F	0.765	0.93
9_I	131_V	0.764	0.93
118_C	122_N	0.762	0.93
266_F	287_L	0.762	0.93
208_A	238_P	0.761	0.93
224_F	239_A	0.759	0.93
299_G	320_T	0.755	0.93
267_L	318_I	0.755	0.93
27_R	154_K	0.752	0.92
194_F	247_W	0.749	0.92
253_V	328_P	0.743	0.92
24_Q	88_K	0.742	0.92
279_L	296_Q	0.742	0.92
22_A	29_V	0.741	0.92
58_E	79_Q	0.739	0.92
279_L	309_L	0.739	0.92
30_L	150_V	0.738	0.92
20_A	85_L	0.735	0.92
137_D	140_G	0.735	0.92
386_S	390_C	0.735	0.92
359_V	362_L	0.734	0.91
292_V	296_Q	0.733	0.91
8_I	29_V	0.732	0.91
70_C	382_W	0.731	0.91
8_I	18_C	0.730	0.91
91_I	104_D	0.729	0.91
256_N	259_P	0.729	0.91
37_K	111_V	0.728	0.91
183_N	356_A	0.724	0.91
218_A	251_E	0.722	0.91
266_F	318_I	0.719	0.91
205_Q	232_H	0.718	0.91
126_R	129_S	0.716	0.90
316_A	320_T	0.715	0.90
19_S	118_C	0.712	0.90
210_V	227_N	0.712	0.90
267_L	271_R	0.711	0.90
215_V	254_S	0.710	0.90
18_C	387_A	0.707	0.90
279_L	299_G	0.707	0.90
249_P	341_L	0.707	0.90
333_G	336_T	0.704	0.90
320_T	325_R	0.703	0.90
304_V	308_Q	0.703	0.90
29_V	123_V	0.702	0.90
192_V	337_A	0.702	0.90
355_E	363_Y	0.702	0.90
184_V	187_T	0.700	0.89
203_E	294_R	0.696	0.89
97_T	227_N	0.694	0.89
40_R	166_G	0.693	0.89
129_S	147_G	0.693	0.89
86_V	91_I	0.691	0.89
245_S	341_L	0.689	0.89
193_P	233_R	0.687	0.89
187_T	334_Y	0.687	0.89
27_R	391_A	0.686	0.88
137_D	151_G	0.686	0.88
52_F	91_I	0.684	0.88
258_L	266_F	0.682	0.88
283_L	317_L	0.680	0.88
17_F	77_F	0.680	0.88
98_L	227_N	0.680	0.88
274_H	277_Q	0.679	0.88
70_C	73_A	0.678	0.88
50_C	110_I	0.676	0.88
33_D	125_F	0.675	0.88
143_L	146_N	0.673	0.88
278_S	305_S	0.672	0.87
10_G	15_G	0.671	0.87
266_F	322_T	0.669	0.87
6_A	153_E	0.666	0.87
275_P	282_T	0.666	0.87
193_P	332_E	0.666	0.87
126_R	147_G	0.664	0.87
271_R	306_L	0.664	0.87
132_L	147_G	0.664	0.87
88_K	120_K	0.663	0.87
17_F	388_W	0.662	0.87
239_A	243_I	0.660	0.87
62_Y	378_Y	0.659	0.86
176_I	179_Q	0.659	0.86
12_G	15_G	0.659	0.86
385_S	389_A	0.658	0.86
195_T	233_R	0.658	0.86
164_M	167_L	0.657	0.86
280_K	289_K	0.657	0.86
142_T	151_G	0.655	0.86
354_M	389_A	0.654	0.86
171_P	340_T	0.651	0.86
311_V	314_Q	0.649	0.86
277_Q	282_T	0.649	0.86
258_L	287_L	0.648	0.86
214_S	253_V	0.647	0.85
76_R	388_W	0.645	0.85
295_L	299_G	0.644	0.85
381_Q	384_W	0.642	0.85
298_L	320_T	0.641	0.85
92_A	105_D	0.640	0.85
350_S	357_R	0.640	0.85
23_G	26_G	0.640	0.85
108_Q	111_V	0.633	0.84
207_L	210_V	0.632	0.84
198_K	201_L	0.632	0.84
365_I	369_M	0.631	0.84
74_L	81_D	0.631	0.84
318_I	322_T	0.630	0.84
259_P	322_T	0.630	0.84
34_N	170_S	0.629	0.84
133_S	136_K	0.629	0.84
132_L	142_T	0.628	0.84
245_S	249_P	0.627	0.84
27_R	153_E	0.626	0.84
17_F	85_L	0.625	0.83
282_T	306_L	0.624	0.83
73_A	385_S	0.623	0.83
130_E	146_N	0.623	0.83
154_K	361_G	0.622	0.83
174_Y	177_A	0.617	0.83
365_I	390_C	0.617	0.83
273_A	282_T	0.615	0.82
31_L	121_G	0.615	0.82
230_F	257_L	0.613	0.82
8_I	394_L	0.612	0.82
5_D	152_C	0.612	0.82
192_V	333_G	0.612	0.82
20_A	391_A	0.611	0.82
229_L	241_L	0.610	0.82
22_A	394_L	0.610	0.82
9_I	172_F	0.610	0.82
218_A	221_G	0.608	0.82
207_L	288_P	0.607	0.82
252_F	325_R	0.607	0.82
174_Y	184_V	0.607	0.82
22_A	387_A	0.606	0.82
270_Q	274_H	0.604	0.81
68_H	72_S	0.604	0.81
225_R	239_A	0.604	0.81
196_L	328_P	0.603	0.81
16_M	20_A	0.603	0.81
255_I	326_V	0.602	0.81
171_P	174_Y	0.600	0.81
69_F	72_S	0.600	0.81
56_Y	99_G	0.600	0.81
18_C	394_L	0.598	0.81
183_N	358_K	0.597	0.81
299_G	317_L	0.597	0.81
200_L	326_V	0.597	0.81
271_R	314_Q	0.596	0.80
347_N	357_R	0.596	0.80
30_L	152_C	0.596	0.80
58_E	75_A	0.594	0.80
134_V	141_F	0.592	0.80
204_L	210_V	0.590	0.80
261_V	266_F	0.589	0.80
44_M	167_L	0.588	0.80
197_H	327_Q	0.588	0.80
47_G	50_C	0.586	0.79
136_K	141_F	0.585	0.79
209_G	213_P	0.585	0.79
44_M	166_G	0.582	0.79
194_F	244_S	0.581	0.79
258_L	261_V	0.578	0.78
206_V	211_A	0.578	0.78
168_G	171_P	0.577	0.78
96_K	105_D	0.577	0.78
44_M	47_G	0.576	0.78
265_T	269_E	0.573	0.78
274_H	282_T	0.572	0.78
135_A	149_T	0.572	0.78
102_F	238_P	0.572	0.78
273_A	285_V	0.572	0.78
97_T	226_E	0.572	0.78
305_S	311_V	0.572	0.78
92_A	104_D	0.571	0.78
69_F	73_A	0.570	0.77
89_H	120_K	0.569	0.77
208_A	232_H	0.569	0.77
264_E	315_Q	0.569	0.77
131_V	134_V	0.565	0.77
263_L	322_T	0.564	0.77
20_A	118_C	0.564	0.77
40_R	111_V	0.564	0.77
206_V	218_A	0.562	0.76
76_R	393_D	0.562	0.76
157_I	173_G	0.561	0.76
77_F	85_L	0.560	0.76
248_Q	341_L	0.559	0.76
58_E	61_A	0.559	0.76
291_L	294_R	0.558	0.76
228_L	239_A	0.557	0.76
269_E	272_N	0.557	0.76
294_R	297_Q	0.556	0.76
287_L	292_V	0.555	0.76
37_K	43_L	0.553	0.75
31_L	125_F	0.552	0.75
268_N	271_R	0.552	0.75
66_N	72_S	0.551	0.75
197_H	200_L	0.549	0.75
59_P	71_K	0.548	0.75
119_E	125_F	0.548	0.75
217_T	220_N	0.547	0.75
75_A	352_R	0.545	0.74
22_A	154_K	0.545	0.74
279_L	317_L	0.545	0.74
9_I	159_T	0.543	0.74
180_F	362_L	0.542	0.74
256_N	260_D	0.542	0.74
32_I	143_L	0.541	0.74
295_L	298_L	0.540	0.74
309_L	314_Q	0.540	0.74
64_S	246_Y	0.538	0.73
339_V	373_G	0.537	0.73
289_K	293_E	0.537	0.73
35_G	167_L	0.535	0.73
173_G	176_I	0.535	0.73
354_M	386_S	0.533	0.73
373_G	382_W	0.531	0.72
296_Q	299_G	0.531	0.72
35_G	39_G	0.530	0.72
270_Q	285_V	0.530	0.72
64_S	190_G	0.530	0.72
217_T	254_S	0.530	0.72
55_L	80_W	0.529	0.72
229_L	232_H	0.528	0.72
37_K	108_Q	0.528	0.72
209_G	257_L	0.526	0.72
192_V	330_G	0.525	0.72
175_K	179_Q	0.525	0.72
107_A	166_G	0.524	0.71
35_G	45_S	0.524	0.71
55_L	79_Q	0.521	0.71
228_L	240_V	0.521	0.71
72_S	76_R	0.518	0.71
182_L	349_L	0.517	0.70
311_V	315_Q	0.517	0.70
27_R	390_C	0.516	0.70
55_L	83_I	0.515	0.70
280_K	293_E	0.514	0.70
11_A	39_G	0.512	0.70
193_P	241_L	0.512	0.70
67_P	71_K	0.512	0.70
186_P	248_Q	0.512	0.70
72_S	351_S	0.512	0.70
47_G	338_E	0.511	0.70
214_S	255_I	0.511	0.70
154_K	355_E	0.510	0.69
367_E	379_N	0.509	0.69
18_C	390_C	0.508	0.69
350_S	353_T	0.507	0.69
167_L	170_S	0.507	0.69
121_G	391_A	0.507	0.69
109_Q	112_D	0.506	0.69
288_P	291_L	0.505	0.69
268_N	272_N	0.505	0.69
212_V	216_I	0.504	0.68
141_F	144_D	0.504	0.68
277_Q	284_A	0.503	0.68
32_I	145_L	0.503	0.68
283_L	292_V	0.502	0.68
136_K	360_P	0.502	0.68
40_R	167_L	0.500	0.68
232_H	238_P	0.500	0.68
206_V	213_P	0.500	0.68

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3v76A	2	0.9675	100	0.358	Contact Map
2i0zA	1	0.985	100	0.435	Contact Map
4cnkA	2	0.97	100	0.444	Contact Map
2gqfA	4	0.9825	100	0.491	Contact Map
3cesA	2	0.8025	100	0.707	Contact Map
3nlcA	1	0.945	100	0.715	Contact Map
4at0A	2	0.935	100	0.738	Contact Map
2wdqA	1	0.88	100	0.77	Contact Map
3cp8A	2	0.8325	100	0.771	Contact Map
1kf6A	1	0.9	100	0.771	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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