IAAA - ECOLI - GREMLIN Contacts

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IAAA - Isoaspartyl peptidase

UniProt:	P37595	Sequences: MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12407
Length:	321 (286)
Sequences:	2106 (1288)
Seq/√Len:	76.2

ECOLI - IAAA
HALSA - Q9HNZ8
SULSO - Q97W87

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
42_M	47_E	4.648	1.00
54_T	108_L	4.480	1.00
281_D	285_N	4.475	1.00
57_V	194_A	4.324	1.00
147_S	151_E	3.855	1.00
190_N	222_N	3.854	1.00
191_L	226_A	3.667	1.00
58_R	108_L	3.471	1.00
62_E	105_N	3.398	1.00
107_V	194_A	3.287	1.00
100_V	109_A	3.033	1.00
72_A	82_L	2.969	1.00
245_I	277_L	2.969	1.00
98_A	123_I	2.649	1.00
123_I	208_V	2.637	1.00
51_D	111_R	2.635	1.00
111_R	115_E	2.625	1.00
257_A	261_E	2.590	1.00
255_S	258_E	2.509	1.00
248_L	254_L	2.459	1.00
31_A	63_C	2.369	1.00
36_V	298_A	2.323	1.00
79_T	101_S	2.287	1.00
240_L	243_Y	2.284	1.00
74_F	145_S	2.238	1.00
122_M	130_F	2.154	1.00
86_V	107_V	2.146	1.00
74_F	80_H	2.110	1.00
75_T	79_T	2.105	1.00
54_T	111_R	2.006	1.00
53_V	184_A	1.996	1.00
96_A	121_M	1.984	1.00
75_T	81_E	1.950	1.00
261_E	265_M	1.936	1.00
254_L	262_R	1.920	1.00
150_Y	154_L	1.865	1.00
88_D	91_T	1.820	1.00
112_L	116_Q	1.724	1.00
80_H	145_S	1.703	1.00
109_A	136_M	1.691	1.00
195_T	228_S	1.684	1.00
26_L	30_E	1.680	1.00
227_V	279_A	1.676	1.00
94_A	120_V	1.663	1.00
54_T	86_V	1.662	1.00
185_L	280_I	1.602	1.00
28_Y	65_L	1.598	1.00
77_D	129_N	1.588	0.99
244_D	247_A	1.582	0.99
92_L	219_Y	1.577	0.99
132_F	138_R	1.559	0.99
248_L	262_R	1.555	0.99
94_A	214_V	1.551	0.99
264_V	291_N	1.541	0.99
130_F	134_R	1.538	0.99
102_H	138_R	1.537	0.99
241_A	263_V	1.536	0.99
125_E	129_N	1.532	0.99
260_C	279_A	1.528	0.99
47_E	52_V	1.513	0.99
52_V	56_A	1.505	0.99
99_G	123_I	1.498	0.99
145_S	150_Y	1.491	0.99
85_C	218_C	1.489	0.99
221_N	250_D	1.464	0.99
236_F	275_G	1.458	0.99
256_L	279_A	1.451	0.99
102_H	141_P	1.432	0.99
213_L	216_A	1.429	0.99
301_Y	304_D	1.420	0.99
25_E	29_I	1.409	0.99
62_E	104_R	1.390	0.99
191_L	220_A	1.368	0.98
90_N	222_N	1.359	0.98
6_I	36_V	1.352	0.98
38_T	59_L	1.345	0.98
56_A	182_A	1.333	0.98
57_V	180_V	1.329	0.98
185_L	191_L	1.328	0.98
200_M	232_T	1.310	0.98
88_D	93_K	1.307	0.98
54_T	58_R	1.305	0.98
121_M	213_L	1.304	0.98
42_M	52_V	1.285	0.98
98_A	208_V	1.284	0.98
35_I	59_L	1.283	0.98
34_A	63_C	1.280	0.98
112_L	134_R	1.276	0.98
53_V	194_A	1.274	0.98
103_L	109_A	1.272	0.97
227_V	242_A	1.266	0.97
102_H	128_E	1.263	0.97
153_L	157_R	1.262	0.97
244_D	251_Y	1.260	0.97
243_Y	247_A	1.255	0.97
213_L	237_I	1.251	0.97
57_V	107_V	1.234	0.97
286_V	299_W	1.225	0.97
225_V	246_A	1.181	0.96
117_S	204_L	1.181	0.96
81_E	101_S	1.180	0.96
228_S	278_I	1.175	0.96
38_T	41_K	1.162	0.96
108_L	111_R	1.155	0.96
274_S	292_T	1.150	0.95
98_A	121_M	1.141	0.95
88_D	190_N	1.133	0.95
41_K	45_A	1.113	0.95
147_S	150_Y	1.108	0.94
127_A	131_A	1.106	0.94
49_A	192_A	1.094	0.94
103_L	131_A	1.093	0.94
236_F	241_A	1.092	0.94
33_S	37_E	1.074	0.93
40_Q	44_E	1.068	0.93
193_A	218_C	1.063	0.93
105_N	108_L	1.060	0.93
112_L	136_M	1.051	0.93
103_L	128_E	1.048	0.93
113_V	117_S	1.045	0.92
116_Q	134_R	1.044	0.92
149_R	152_Q	1.040	0.92
248_L	267_K	1.040	0.92
74_F	150_Y	1.039	0.92
224_S	246_A	1.039	0.92
90_N	190_N	1.038	0.92
38_T	56_A	1.038	0.92
58_R	105_N	1.029	0.92
62_E	143_I	1.021	0.92
117_S	130_F	1.014	0.91
39_G	56_A	1.013	0.91
229_C	277_L	1.012	0.91
47_E	51_D	1.011	0.91
49_A	184_A	1.003	0.91
247_A	250_D	0.999	0.91
225_V	249_M	0.993	0.90
6_I	300_G	0.989	0.90
35_I	55_E	0.988	0.90
183_V	226_A	0.986	0.90
146_T	149_R	0.981	0.90
104_R	143_I	0.978	0.90
55_E	58_R	0.973	0.90
70_I	143_I	0.973	0.90
245_I	279_A	0.968	0.89
103_L	138_R	0.961	0.89
31_A	34_A	0.960	0.89
54_T	115_E	0.947	0.88
41_K	44_E	0.944	0.88
35_I	39_G	0.944	0.88
249_M	279_A	0.940	0.88
154_L	157_R	0.940	0.88
230_T	295_M	0.932	0.87
37_E	300_G	0.931	0.87
181_G	228_S	0.927	0.87
40_Q	300_G	0.927	0.87
7_A	226_A	0.922	0.87
183_V	228_S	0.920	0.87
5_V	185_L	0.918	0.87
244_D	248_L	0.917	0.87
76_R	157_R	0.914	0.86
262_R	266_E	0.910	0.86
31_A	35_I	0.905	0.86
76_R	205_P	0.905	0.86
254_L	258_E	0.903	0.86
50_L	86_V	0.898	0.85
82_L	100_V	0.897	0.85
38_T	55_E	0.897	0.85
67_N	73_V	0.894	0.85
209_G	212_P	0.883	0.84
82_L	139_V	0.883	0.84
229_C	242_A	0.882	0.84
60_L	68_A	0.881	0.84
114_M	117_S	0.861	0.83
95_G	113_V	0.861	0.83
42_M	45_A	0.850	0.82
64_P	146_T	0.849	0.82
239_A	271_L	0.845	0.82
144_F	147_S	0.839	0.81
186_D	190_N	0.838	0.81
290_F	297_R	0.830	0.81
53_V	192_A	0.830	0.81
197_T	210_D	0.829	0.80
120_V	234_E	0.827	0.80
214_V	218_C	0.826	0.80
50_L	192_A	0.821	0.80
70_I	139_V	0.820	0.80
144_F	149_R	0.818	0.80
55_E	59_L	0.813	0.79
120_V	237_I	0.812	0.79
144_F	150_Y	0.809	0.79
247_A	251_Y	0.806	0.79
43_L	52_V	0.804	0.78
8_I	35_I	0.802	0.78
197_T	211_S	0.800	0.78
249_M	281_D	0.790	0.77
85_C	214_V	0.790	0.77
80_H	141_P	0.788	0.77
57_V	182_A	0.779	0.76
13_G	67_N	0.778	0.76
178_G	228_S	0.778	0.76
89_G	220_A	0.777	0.76
85_C	240_L	0.775	0.76
8_I	298_A	0.775	0.76
49_A	186_D	0.774	0.76
6_I	39_G	0.773	0.76
42_M	55_E	0.773	0.76
128_E	132_F	0.772	0.76
73_V	203_K	0.771	0.75
72_A	80_H	0.770	0.75
195_T	278_I	0.770	0.75
142_E	146_T	0.769	0.75
58_R	62_E	0.766	0.75
8_I	32_L	0.766	0.75
78_E	150_Y	0.763	0.75
35_I	52_V	0.756	0.74
94_A	121_M	0.754	0.74
113_V	130_F	0.754	0.74
83_D	211_S	0.753	0.74
50_L	54_T	0.752	0.74
65_L	236_F	0.749	0.73
261_E	289_P	0.748	0.73
72_A	198_G	0.745	0.73
155_A	158_K	0.745	0.73
89_G	192_A	0.745	0.73
43_L	46_G	0.744	0.73
182_A	194_A	0.741	0.73
193_A	220_A	0.740	0.72
247_A	266_E	0.739	0.72
48_S	188_D	0.736	0.72
156_A	202_N	0.735	0.72
216_A	240_L	0.735	0.72
128_E	138_R	0.730	0.71
26_L	33_S	0.726	0.71
260_C	277_L	0.725	0.71
221_N	282_H	0.725	0.71
301_Y	305_T	0.723	0.71
235_V	271_L	0.723	0.71
290_F	295_M	0.720	0.70
14_A	296_Y	0.720	0.70
151_E	155_A	0.718	0.70
77_D	205_P	0.716	0.70
48_S	51_D	0.715	0.70
241_A	268_L	0.715	0.70
120_V	214_V	0.714	0.70
7_A	286_V	0.713	0.70
52_V	55_E	0.712	0.69
124_G	131_A	0.710	0.69
195_T	218_C	0.709	0.69
50_L	115_E	0.703	0.69
70_I	146_T	0.700	0.68
74_F	200_M	0.700	0.68
13_G	28_Y	0.697	0.68
170_P	173_E	0.695	0.68
5_V	286_V	0.691	0.67
82_L	128_E	0.691	0.67
67_N	198_G	0.689	0.67
46_G	186_D	0.688	0.67
150_Y	153_L	0.686	0.67
227_V	246_A	0.685	0.67
68_A	180_V	0.683	0.66
97_V	113_V	0.683	0.66
232_T	268_L	0.682	0.66
256_L	287_A	0.681	0.66
253_G	259_A	0.679	0.66
112_L	115_E	0.675	0.65
174_K	177_M	0.674	0.65
59_L	63_C	0.672	0.65
64_P	70_I	0.669	0.65
94_A	218_C	0.667	0.64
129_N	133_A	0.665	0.64
105_N	137_E	0.660	0.64
181_G	276_G	0.659	0.64
113_V	119_H	0.658	0.63
113_V	121_M	0.657	0.63
276_G	295_M	0.656	0.63
81_E	203_K	0.654	0.63
6_I	184_A	0.653	0.63
243_Y	250_D	0.651	0.63
92_L	221_N	0.650	0.62
191_L	281_D	0.648	0.62
178_G	218_C	0.645	0.62
239_A	268_L	0.642	0.62
60_L	198_G	0.641	0.61
95_G	110_A	0.640	0.61
148_L	151_E	0.639	0.61
15_I	294_G	0.638	0.61
8_I	56_A	0.635	0.61
63_C	70_I	0.631	0.60
10_G	66_F	0.629	0.60
103_L	136_M	0.629	0.60
8_I	31_A	0.628	0.60
28_Y	32_L	0.628	0.60
220_A	226_A	0.627	0.60
126_G	130_F	0.626	0.60
191_L	216_A	0.626	0.60
292_T	295_M	0.625	0.59
83_D	208_V	0.624	0.59
44_E	187_L	0.624	0.59
50_L	111_R	0.621	0.59
31_A	66_F	0.620	0.59
264_V	268_L	0.617	0.58
70_I	105_N	0.617	0.58
17_R	25_E	0.615	0.58
111_R	114_M	0.614	0.58
37_E	305_T	0.614	0.58
235_V	239_A	0.613	0.58
223_A	282_H	0.612	0.58
275_G	295_M	0.611	0.58
182_A	295_M	0.610	0.58
49_A	189_G	0.609	0.57
52_V	184_A	0.609	0.57
248_L	251_Y	0.608	0.57
258_E	262_R	0.607	0.57
39_G	184_A	0.605	0.57
149_R	201_T	0.604	0.57
277_L	289_P	0.604	0.57
48_S	190_N	0.603	0.57
241_A	277_L	0.603	0.57
78_E	154_L	0.601	0.57
195_T	230_T	0.600	0.56
300_G	304_D	0.599	0.56
85_C	94_A	0.599	0.56
145_S	149_R	0.599	0.56
295_M	298_A	0.596	0.56
102_H	142_E	0.594	0.56
245_I	260_C	0.594	0.56
298_A	302_A	0.594	0.56
101_S	125_E	0.592	0.55
90_N	188_D	0.592	0.55
243_Y	248_L	0.591	0.55
16_S	293_E	0.589	0.55
126_G	234_E	0.588	0.55
16_S	28_Y	0.584	0.54
44_E	91_T	0.583	0.54
260_C	289_P	0.582	0.54
127_A	130_F	0.582	0.54
150_Y	157_R	0.582	0.54
212_P	229_C	0.581	0.54
239_A	243_Y	0.581	0.54
109_A	130_F	0.579	0.54
121_M	208_V	0.578	0.54
146_T	153_L	0.577	0.53
83_D	126_G	0.577	0.53
207_R	233_G	0.577	0.53
13_G	294_G	0.574	0.53
125_E	128_E	0.572	0.53
229_C	245_I	0.571	0.53
41_K	55_E	0.571	0.53
14_A	294_G	0.571	0.53
13_G	203_K	0.570	0.53
148_L	152_Q	0.569	0.52
183_V	195_T	0.569	0.52
288_L	297_R	0.569	0.52
82_L	101_S	0.568	0.52
67_N	74_F	0.568	0.52
151_E	154_L	0.568	0.52
15_I	18_A	0.566	0.52
86_V	114_M	0.565	0.52
226_A	280_I	0.564	0.52
244_D	267_K	0.562	0.52
85_C	193_A	0.561	0.51
73_V	201_T	0.558	0.51
171_L	174_K	0.558	0.51
227_V	277_L	0.558	0.51
48_S	192_A	0.558	0.51
264_V	269_P	0.557	0.51
260_C	264_V	0.555	0.51
142_E	150_Y	0.555	0.51
75_T	203_K	0.554	0.51
149_R	296_Y	0.551	0.50
99_G	126_G	0.549	0.50
141_P	150_Y	0.548	0.50
260_C	287_A	0.547	0.50
235_V	272_G	0.547	0.50
249_M	253_G	0.546	0.50
33_S	45_A	0.545	0.49
180_V	196_S	0.545	0.49
294_G	297_R	0.544	0.49
50_L	114_M	0.544	0.49
52_V	59_L	0.543	0.49
87_M	94_A	0.543	0.49
141_P	145_S	0.543	0.49
224_S	249_M	0.542	0.49
143_I	149_R	0.541	0.49
67_N	149_R	0.540	0.49
225_V	245_I	0.539	0.49
83_D	99_G	0.538	0.49
10_G	197_T	0.538	0.49
129_N	132_F	0.538	0.49
299_W	302_A	0.536	0.48
276_G	290_F	0.535	0.48
62_E	70_I	0.534	0.48
59_L	62_E	0.533	0.48
221_N	224_S	0.532	0.48
122_M	134_R	0.531	0.48
37_E	41_K	0.529	0.47
13_G	16_S	0.529	0.47
183_V	280_I	0.527	0.47
68_A	198_G	0.527	0.47
157_R	202_N	0.527	0.47
58_R	194_A	0.527	0.47
179_T	233_G	0.525	0.47
257_A	287_A	0.524	0.47
14_A	293_E	0.524	0.47
189_G	192_A	0.523	0.47
10_G	210_D	0.522	0.47
219_Y	228_S	0.521	0.46
97_V	100_V	0.521	0.46
146_T	150_Y	0.520	0.46
139_V	143_I	0.516	0.46
80_H	150_Y	0.516	0.46
143_I	146_T	0.515	0.46
34_A	38_T	0.514	0.46
253_G	256_L	0.513	0.45
109_A	226_A	0.511	0.45
7_A	288_L	0.511	0.45
104_R	137_E	0.510	0.45
210_D	219_Y	0.509	0.45
31_A	59_L	0.508	0.45
94_A	237_I	0.507	0.45
66_F	198_G	0.507	0.45
73_V	198_G	0.505	0.44
114_M	214_V	0.505	0.44
87_M	197_T	0.505	0.44
96_A	209_G	0.503	0.44
83_D	121_M	0.501	0.44
195_T	211_S	0.500	0.44
38_T	42_M	0.500	0.44
46_G	49_A	0.500	0.44

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3c17A	2	0.9564	100	0.052	Contact Map
4o0cA	2	0.919	100	0.099	Contact Map
2a8jA	2	0.8536	100	0.121	Contact Map
1p4kA	2	0.891	100	0.212	Contact Map
4pv2A	1	0.4798	100	0.409	Contact Map
1k2xA	1	0.486	100	0.5	Contact Map
2gezA	2	0.514	100	0.506	Contact Map
1k2xB	2	0.4206	100	0.584	Contact Map
2gezB	2	0.4143	100	0.607	Contact Map
4pv2B	2	0.4081	100	0.607	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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