GREMLIN Database
YADN - Uncharacterized fimbrial-like protein YadN
UniProt: P37050 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12328
Length: 194 (165)
Sequences: 3092 (2451)
Seq/√Len: 190.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
128_I167_A3.2671.00
124_D179_T3.2101.00
42_E85_D3.0421.00
112_T127_N3.0371.00
131_H168_S2.9761.00
97_A191_I2.9211.00
129_A170_V2.8571.00
129_A168_S2.7711.00
81_S162_V2.7501.00
115_N183_V2.7061.00
113_L143_I2.7001.00
66_A73_V2.6181.00
169_Y183_V2.4431.00
125_G178_A2.3691.00
83_T162_V2.1201.00
128_I185_T2.0731.00
122_P182_Y2.0231.00
132_N136_S2.0021.00
65_D73_V1.9231.00
113_L187_T1.8941.00
119_I122_P1.8711.00
129_A140_Q1.8641.00
79_P166_K1.8141.00
44_R83_T1.7831.00
81_S164_D1.7811.00
24_D27_G1.7651.00
142_Q145_N1.7071.00
44_R49_N1.6981.00
106_F172_A1.6831.00
35_L58_T1.6431.00
77_A168_S1.6081.00
112_T170_V1.5931.00
135_G166_K1.5671.00
49_N52_G1.5541.00
64_I171_R1.5431.00
74_G129_A1.4831.00
102_G190_T1.4771.00
59_A75_A1.4591.00
56_L169_Y1.4571.00
79_P164_D1.4471.00
99_M163_Y1.4341.00
52_G82_I1.4121.00
156_A159_K1.3831.00
80_F130_L1.3821.00
57_Q78_K1.3681.00
111_G142_Q1.3531.00
18_A22_S1.3531.00
49_N83_T1.3521.00
74_G168_S1.3301.00
57_Q183_V1.3091.00
10_S13_M1.2801.00
74_G131_H1.2781.00
112_T129_A1.2681.00
102_G144_N1.2581.00
13_M16_M1.2071.00
97_A161_A1.2061.00
44_R48_G1.1971.00
31_N186_N1.1591.00
57_Q76_K1.1591.00
64_I178_A1.1301.00
125_G176_Q1.1241.00
56_L183_V1.1241.00
74_G170_V1.1201.00
28_G189_Y1.1131.00
103_S113_L1.0851.00
54_I80_F1.0751.00
36_V178_A1.0741.00
28_G32_I1.0721.00
171_R177_T1.0691.00
154_L157_T1.0621.00
108_N127_N1.0521.00
14_L17_V1.0491.00
133_I164_D1.0481.00
18_A21_A1.0391.00
100_T146_P1.0241.00
103_S106_F1.0201.00
171_R178_A1.0131.00
64_I176_Q1.0031.00
98_K192_T1.0021.00
64_I73_V0.9991.00
113_L185_T0.9900.99
156_A161_A0.9880.99
147_G150_Y0.9860.99
155_D158_T0.9830.99
63_E75_A0.9820.99
59_A169_Y0.9770.99
13_M17_V0.9730.99
127_N172_A0.9700.99
38_D61_V0.9610.99
65_D171_R0.9520.99
64_I126_V0.9520.99
38_D87_S0.9490.99
77_A166_K0.9420.99
19_G23_A0.9370.99
105_F111_G0.9340.99
64_I172_A0.9330.99
60_T63_E0.9160.99
20_T24_D0.9140.99
16_M19_G0.9110.99
56_L167_A0.9060.99
99_M191_I0.9050.99
52_G189_Y0.9040.99
100_T192_T0.9010.99
33_S53_L0.8990.99
12_L15_A0.8970.99
108_N175_D0.8930.99
33_S55_L0.8870.99
154_L158_T0.8840.99
9_L12_L0.8830.99
123_S126_V0.8810.99
130_L187_T0.8800.99
131_H166_K0.8570.98
131_H140_Q0.8520.98
15_A18_A0.8490.98
84_V161_A0.8470.98
145_N148_D0.8470.98
82_I189_Y0.8450.98
105_F143_I0.8410.98
8_A12_L0.8400.98
141_V147_G0.8250.98
128_I183_V0.8240.98
143_I185_T0.8200.98
17_V21_A0.8170.98
19_G22_S0.8150.98
147_G165_F0.8140.98
10_S14_L0.8130.98
101_F130_L0.8060.98
40_T169_Y0.8040.98
126_V169_Y0.7920.97
29_Q51_D0.7790.97
106_F127_N0.7760.97
8_A11_G0.7740.97
47_G52_G0.7660.97
59_A183_V0.7650.97
77_A131_H0.7540.97
121_N182_Y0.7500.96
28_G34_G0.7410.96
9_L18_A0.7400.96
115_N184_K0.7400.96
96_T155_D0.7360.96
89_A95_S0.7230.96
14_L19_G0.7220.96
47_G50_K0.7220.96
134_D150_Y0.7210.96
9_L16_M0.7200.96
59_A64_I0.7030.95
74_G77_A0.7020.95
83_T160_S0.7020.95
54_I167_A0.7010.95
15_A19_G0.7000.95
14_L18_A0.6970.95
63_E76_K0.6840.94
126_V171_R0.6810.94
56_L128_I0.6780.94
115_N121_N0.6780.94
96_T149_V0.6770.94
61_V180_A0.6760.94
11_G15_A0.6750.94
44_R160_S0.6730.94
56_L78_K0.6720.94
31_N53_L0.6690.93
12_L21_A0.6680.93
40_T88_K0.6680.93
87_S131_H0.6640.93
11_G19_G0.6470.92
26_D29_Q0.6450.92
141_V165_F0.6430.92
100_T145_N0.6380.92
88_K95_S0.6340.91
8_A20_T0.6330.91
71_D171_R0.6320.91
126_V183_V0.6260.91
36_V59_A0.6250.91
61_V178_A0.6230.91
106_F110_K0.6210.91
143_I165_F0.6190.90
65_D178_A0.6180.90
13_M18_A0.6170.90
130_L143_I0.6140.90
31_N51_D0.6120.90
15_A21_A0.6110.90
172_A175_D0.6080.90
155_D160_S0.6050.89
30_L187_T0.6050.89
75_A169_Y0.6040.89
100_T103_S0.6030.89
8_A15_A0.6010.89
119_I184_K0.6000.89
35_L182_Y0.5990.89
10_S18_A0.5920.88
115_N126_V0.5910.88
15_A20_T0.5910.88
125_G172_A0.5880.88
14_L22_S0.5860.88
104_V114_N0.5850.88
97_A156_A0.5830.88
66_A171_R0.5830.88
30_L80_F0.5820.88
56_L115_N0.5820.88
113_L128_I0.5820.88
36_V115_N0.5810.88
21_A24_D0.5770.87
16_M21_A0.5730.87
66_A109_S0.5720.87
23_A26_D0.5710.87
154_L159_K0.5700.87
126_V178_A0.5700.87
55_L78_K0.5690.86
14_L21_A0.5690.86
102_G188_A0.5650.86
30_L53_L0.5610.86
55_L58_T0.5600.86
16_M20_T0.5570.85
57_Q184_K0.5570.85
19_G24_D0.5560.85
71_D125_G0.5560.85
101_F187_T0.5550.85
98_K147_G0.5550.85
9_L13_M0.5540.85
131_H135_G0.5530.85
78_K167_A0.5520.85
101_F165_F0.5500.85
55_L169_Y0.5410.84
18_A146_P0.5400.83
129_A189_Y0.5400.83
85_D160_S0.5390.83
143_I146_P0.5380.83
86_C89_A0.5370.83
81_S105_F0.5350.83
110_K127_N0.5340.83
40_T187_T0.5320.83
29_Q188_A0.5290.82
36_V169_Y0.5210.81
103_S186_N0.5200.81
10_S15_A0.5180.81
165_F189_Y0.5170.81
114_N127_N0.5150.81
101_F191_I0.5140.80
78_K85_D0.5120.80
51_D189_Y0.5110.80
71_D178_A0.5110.80
37_V87_S0.5110.80
53_L188_A0.5050.79
96_T158_T0.5050.79
98_K146_P0.5030.79
20_T23_A0.5020.79
87_S191_I0.5010.79
115_N123_S0.5000.79
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2jmrA 1 0.7938 100 0.298 Contact Map
2jtyA 1 0.8093 100 0.308 Contact Map
2xg5B 1 0.732 100 0.312 Contact Map
2uy6B 2 0.7629 100 0.33 Contact Map
1pdkB 1 0.7371 100 0.341 Contact Map
3bwuF 1 0.6546 99.9 0.395 Contact Map
2w07B 1 0.6186 99.9 0.399 Contact Map
4dwhB 1 0.701 99.9 0.418 Contact Map
5afoA 1 0.9072 99.9 0.422 Contact Map
3bfqG 1 0.6753 99.9 0.428 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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