RSMB - ECOLI - GREMLIN Contacts

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RSMB - Ribosomal RNA small subunit methyltransferase B

UniProt:	P36929	Sequences: MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12163
Length:	429 (416)
Sequences:	3982 (2927)
Seq/√Len:	143.5

ECOLI - RSMB RSMF
BACSU - RSMB
HALSA - Q9HRX7
SULSO - Q980Z5 Q980N8 Q980E2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
358_D	392_R	3.971	1.00
319_I	364_L	3.896	1.00
145_H	168_N	3.833	1.00
386_I	426_L	3.805	1.00
354_S	388_A	3.398	1.00
59_D	82_M	3.365	1.00
107_I	115_K	3.292	1.00
305_R	355_E	3.235	1.00
251_L	316_F	2.790	1.00
84_G	102_T	2.777	1.00
397_E	427_I	2.719	1.00
189_L	209_V	2.702	1.00
80_L	106_A	2.696	1.00
156_A	379_P	2.695	1.00
152_R	380_E	2.681	1.00
354_S	385_Q	2.636	1.00
202_H	208_A	2.628	1.00
317_D	365_K	2.592	1.00
321_L	356_I	2.566	1.00
124_Q	128_Q	2.563	1.00
369_T	427_I	2.549	1.00
272_Q	298_T	2.542	1.00
43_L	93_I	2.515	1.00
408_G	422_F	2.476	1.00
248_E	318_R	2.464	1.00
124_Q	127_R	2.448	1.00
158_P	161_W	2.437	1.00
361_W	396_A	2.434	1.00
369_T	425_K	2.389	1.00
184_S	187_S	2.341	1.00
399_C	427_I	2.321	1.00
274_V	316_F	2.316	1.00
364_L	370_L	2.298	1.00
188_W	228_V	2.282	1.00
202_H	233_A	2.221	1.00
253_L	360_I	2.217	1.00
269_P	297_A	2.198	1.00
389_F	396_A	2.144	1.00
361_W	389_F	2.114	1.00
358_D	393_T	2.079	1.00
268_A	271_A	2.076	1.00
249_H	272_Q	2.072	1.00
145_H	165_V	2.058	1.00
85_L	125_F	2.027	1.00
399_C	425_K	1.970	1.00
388_A	392_R	1.950	1.00
50_G	86_Y	1.949	1.00
350_A	385_Q	1.931	1.00
150_L	165_V	1.925	1.00
120_G	124_Q	1.924	1.00
277_D	283_L	1.909	1.00
189_L	199_G	1.899	1.00
147_S	151_K	1.887	1.00
200_F	212_E	1.853	1.00
191_L	227_W	1.832	1.00
261_T	273_V	1.829	1.00
371_V	425_K	1.817	1.00
398_L	408_G	1.807	1.00
182_H	294_G	1.806	1.00
183_H	188_W	1.796	1.00
261_T	275_A	1.789	1.00
398_L	424_A	1.770	1.00
283_L	301_Q	1.767	1.00
262_T	293_L	1.752	1.00
106_A	118_I	1.751	1.00
178_I	188_W	1.748	1.00
255_A	286_V	1.734	1.00
100_A	104_E	1.726	1.00
152_R	378_L	1.718	1.00
66_M	117_L	1.704	1.00
283_L	299_V	1.695	1.00
239_M	263_H	1.673	1.00
284_S	287_Y	1.662	1.00
244_P	248_E	1.653	1.00
12_A	83_V	1.646	1.00
54_T	57_Q	1.638	1.00
383_S	410_Q	1.632	1.00
57_Q	90_Y	1.624	1.00
180_R	207_D	1.608	1.00
245_Q	248_E	1.598	1.00
328_T	376_S	1.597	1.00
84_G	98_A	1.584	1.00
160_Q	414_G	1.575	1.00
221_P	225_D	1.567	1.00
154_Q	161_W	1.559	1.00
374_T	382_N	1.558	1.00
364_L	428_K	1.555	1.00
389_F	393_T	1.551	1.00
153_L	378_L	1.512	1.00
328_T	378_L	1.508	1.00
175_W	210_R	1.485	1.00
73_K	117_L	1.483	1.00
242_L	264_I	1.472	1.00
14_A	44_L	1.447	1.00
387_K	391_Q	1.447	1.00
17_Q	21_Q	1.441	1.00
157_Y	412_L	1.435	1.00
47_L	83_V	1.428	1.00
234_S	418_G	1.425	1.00
176_L	228_V	1.411	1.00
153_L	165_V	1.411	1.00
59_D	78_H	1.411	1.00
89_L	125_F	1.407	1.00
160_Q	415_A	1.402	1.00
386_I	390_L	1.399	1.00
65_L	125_F	1.394	1.00
205_Y	233_A	1.390	1.00
80_L	102_T	1.385	1.00
161_W	165_V	1.384	1.00
11_A	47_L	1.376	1.00
14_A	32_L	1.363	1.00
208_A	236_Q	1.362	1.00
229_T	262_T	1.360	1.00
134_A	139_S	1.357	1.00
384_L	387_K	1.350	1.00
274_V	300_K	1.323	1.00
255_A	261_T	1.320	1.00
46_E	86_Y	1.320	1.00
185_R	201_P	1.315	1.00
222_G	228_V	1.314	1.00
14_A	28_I	1.311	1.00
243_A	318_R	1.308	1.00
361_W	370_L	1.306	1.00
88_L	126_Q	1.301	1.00
56_S	339_W	1.301	1.00
411_N	418_G	1.285	1.00
240_T	267_V	1.281	1.00
280_E	301_Q	1.262	1.00
244_P	250_I	1.261	1.00
205_Y	208_A	1.258	1.00
13_Q	109_I	1.247	1.00
283_L	286_V	1.243	1.00
242_L	318_R	1.242	1.00
238_C	423_Y	1.240	1.00
199_G	209_V	1.233	1.00
241_W	423_Y	1.231	1.00
101_E	104_E	1.226	1.00
249_H	316_F	1.216	1.00
207_D	240_T	1.212	1.00
354_S	392_R	1.202	1.00
351_Q	355_E	1.201	1.00
249_H	274_V	1.198	1.00
183_H	227_W	1.198	1.00
379_P	384_L	1.198	1.00
58_L	86_Y	1.182	1.00
354_S	358_D	1.174	1.00
323_A	356_I	1.159	1.00
390_L	426_L	1.157	1.00
182_H	227_W	1.156	1.00
103_V	119_N	1.154	0.99
244_P	268_A	1.145	0.99
302_G	307_P	1.141	0.99
232_D	332_R	1.137	0.99
195_A	222_G	1.135	0.99
18_V	52_L	1.133	0.99
120_G	127_R	1.123	0.99
80_L	105_G	1.119	0.99
44_L	48_C	1.118	0.99
93_I	98_A	1.117	0.99
10_M	32_L	1.116	0.99
359_A	362_P	1.115	0.99
250_I	271_A	1.111	0.99
229_T	266_E	1.111	0.99
152_R	343_D	1.110	0.99
364_L	396_A	1.108	0.99
357_L	389_F	1.106	0.99
242_L	371_V	1.106	0.99
190_A	193_D	1.104	0.99
169_N	338_K	1.100	0.99
342_R	345_D	1.100	0.99
304_G	356_I	1.095	0.99
99_L	126_Q	1.094	0.99
175_W	233_A	1.082	0.99
346_I	350_A	1.082	0.99
305_R	356_I	1.077	0.99
234_S	411_N	1.077	0.99
119_N	123_R	1.076	0.99
58_L	85_L	1.068	0.99
185_R	189_L	1.062	0.99
143_Y	165_V	1.061	0.99
185_R	209_V	1.061	0.99
87_Q	102_T	1.053	0.99
43_L	91_T	1.051	0.99
264_I	318_R	1.050	0.99
16_E	79_Y	1.049	0.99
162_Q	166_E	1.049	0.99
362_P	393_T	1.045	0.99
249_H	315_Q	1.040	0.99
137_N	147_S	1.038	0.99
326_S	346_I	1.037	0.99
379_P	383_S	1.034	0.99
290_L	297_A	1.032	0.99
243_A	369_T	1.031	0.99
380_E	384_L	1.027	0.99
370_L	389_F	1.019	0.99
307_P	363_H	1.019	0.99
88_L	95_P	1.017	0.99
19_V	22_G	1.014	0.99
195_A	221_P	1.014	0.99
238_C	371_V	1.012	0.99
88_L	98_A	1.006	0.99
151_K	155_K	1.002	0.99
253_L	276_V	1.002	0.99
180_R	266_E	1.001	0.99
369_T	399_C	1.000	0.99
331_I	338_K	0.995	0.98
341_R	345_D	0.991	0.98
189_L	201_P	0.981	0.98
186_D	190_A	0.981	0.98
352_L	355_E	0.979	0.98
287_Y	299_V	0.976	0.98
24_S	27_N	0.975	0.98
401_T	409_K	0.970	0.98
164_I	377_V	0.968	0.98
305_R	352_L	0.967	0.98
306_Y	309_Q	0.967	0.98
326_S	349_L	0.965	0.98
166_E	170_Q	0.962	0.98
96_H	100_A	0.957	0.98
65_L	128_Q	0.956	0.98
222_G	227_W	0.956	0.98
190_A	194_E	0.950	0.98
318_R	369_T	0.950	0.98
287_Y	291_K	0.942	0.98
129_Q	132_L	0.939	0.98
264_I	320_L	0.934	0.98
12_A	79_Y	0.934	0.98
175_W	202_H	0.934	0.98
19_V	55_L	0.931	0.98
404_P	407_P	0.925	0.98
134_A	140_D	0.925	0.98
200_F	210_R	0.924	0.98
255_A	275_A	0.924	0.98
264_I	273_V	0.923	0.98
204_D	233_A	0.923	0.98
390_L	398_L	0.922	0.98
46_E	53_R	0.921	0.98
154_Q	158_P	0.919	0.97
134_A	138_A	0.915	0.97
63_N	78_H	0.914	0.97
187_S	191_L	0.913	0.97
19_V	79_Y	0.912	0.97
56_S	147_S	0.909	0.97
248_E	369_T	0.905	0.97
202_H	205_Y	0.903	0.97
138_A	142_R	0.900	0.97
359_A	363_H	0.899	0.97
103_V	115_K	0.895	0.97
172_P	333_R	0.889	0.97
9_S	109_I	0.888	0.97
142_R	162_Q	0.886	0.97
56_S	144_L	0.886	0.97
56_S	141_A	0.886	0.97
288_D	291_K	0.885	0.97
46_E	171_R	0.882	0.97
145_H	150_L	0.879	0.97
246_N	270_E	0.876	0.97
160_Q	163_S	0.876	0.97
10_M	36_V	0.876	0.97
16_E	20_E	0.875	0.97
145_H	169_N	0.874	0.97
403_T	406_Q	0.873	0.97
206_P	240_T	0.870	0.96
263_H	267_V	0.868	0.96
168_N	377_V	0.864	0.96
17_Q	28_I	0.860	0.96
45_Q	49_F	0.857	0.96
238_C	263_H	0.855	0.96
43_L	47_L	0.854	0.96
262_T	289_N	0.853	0.96
79_Y	82_M	0.849	0.96
276_V	302_G	0.849	0.96
403_T	407_P	0.849	0.96
264_I	271_A	0.848	0.96
265_L	295_M	0.848	0.96
66_M	73_K	0.847	0.96
181_T	295_M	0.845	0.96
12_A	16_E	0.844	0.96
390_L	396_A	0.843	0.96
176_L	211_L	0.842	0.96
216_P	219_A	0.838	0.96
331_I	337_I	0.836	0.96
262_T	290_L	0.834	0.96
188_W	222_G	0.833	0.96
345_D	348_E	0.833	0.96
223_F	228_V	0.832	0.95
266_E	295_M	0.831	0.95
330_V	334_H	0.831	0.95
347_P	380_E	0.828	0.95
250_I	268_A	0.826	0.95
61_L	125_F	0.826	0.95
348_E	351_Q	0.825	0.95
172_P	332_R	0.825	0.95
208_A	233_A	0.825	0.95
150_L	161_W	0.823	0.95
58_L	90_Y	0.821	0.95
251_L	276_V	0.817	0.95
321_L	360_I	0.813	0.95
112_P	116_G	0.813	0.95
243_A	267_V	0.813	0.95
350_A	354_S	0.812	0.95
232_D	333_R	0.810	0.95
185_R	208_A	0.809	0.95
276_V	300_K	0.809	0.95
319_I	370_L	0.807	0.95
12_A	105_G	0.805	0.95
244_P	264_I	0.803	0.95
164_I	414_G	0.803	0.95
77_V	106_A	0.801	0.94
128_Q	131_E	0.800	0.94
163_S	166_E	0.797	0.94
241_W	401_T	0.797	0.94
193_D	199_G	0.797	0.94
270_E	297_A	0.795	0.94
94_P	97_A	0.793	0.94
408_G	424_A	0.789	0.94
38_D	42_A	0.787	0.94
88_L	99_L	0.784	0.94
28_I	32_L	0.783	0.94
18_V	48_C	0.783	0.94
284_S	288_D	0.783	0.94
14_A	48_C	0.780	0.94
358_D	388_A	0.779	0.94
281_Q	284_S	0.776	0.93
377_V	410_Q	0.774	0.93
134_A	137_N	0.773	0.93
233_A	418_G	0.773	0.93
370_L	396_A	0.771	0.93
396_A	426_L	0.769	0.93
350_A	378_L	0.768	0.93
22_G	28_I	0.768	0.93
136_F	139_S	0.767	0.93
74_Q	114_L	0.767	0.93
244_P	267_V	0.765	0.93
253_L	304_G	0.765	0.93
43_L	87_Q	0.764	0.93
11_A	48_C	0.764	0.93
160_Q	164_I	0.763	0.93
9_S	108_A	0.762	0.93
357_L	370_L	0.762	0.93
80_L	118_I	0.762	0.93
80_L	84_G	0.761	0.93
87_Q	98_A	0.759	0.93
143_Y	150_L	0.757	0.93
87_Q	93_I	0.754	0.92
149_L	378_L	0.753	0.92
307_P	359_A	0.752	0.92
179_N	182_H	0.752	0.92
176_L	209_V	0.752	0.92
15_V	48_C	0.750	0.92
136_F	154_Q	0.750	0.92
413_P	420_G	0.749	0.92
61_L	89_L	0.748	0.92
58_L	82_M	0.745	0.92
181_T	269_P	0.745	0.92
97_A	101_E	0.741	0.92
403_T	408_G	0.741	0.92
268_A	273_V	0.740	0.92
27_N	285_R	0.737	0.92
189_L	193_D	0.734	0.91
178_I	185_R	0.734	0.91
104_E	107_I	0.733	0.91
111_R	114_L	0.733	0.91
205_Y	240_T	0.731	0.91
366_T	428_K	0.729	0.91
183_H	187_S	0.729	0.91
346_I	378_L	0.727	0.91
385_Q	388_A	0.725	0.91
107_I	112_P	0.724	0.91
243_A	248_E	0.723	0.91
183_H	191_L	0.722	0.91
412_L	415_A	0.719	0.91
126_Q	129_Q	0.719	0.91
55_L	82_M	0.719	0.91
51_V	82_M	0.718	0.91
76_T	111_R	0.718	0.91
153_L	377_V	0.718	0.91
151_K	343_D	0.717	0.90
62_I	66_M	0.717	0.90
246_N	268_A	0.716	0.90
56_S	140_D	0.715	0.90
149_L	328_T	0.715	0.90
188_W	191_L	0.712	0.90
12_A	76_T	0.711	0.90
361_W	364_L	0.711	0.90
85_L	89_L	0.709	0.90
371_V	423_Y	0.706	0.90
390_L	393_T	0.706	0.90
404_P	408_G	0.704	0.90
87_Q	91_T	0.704	0.90
383_S	387_K	0.703	0.90
308_S	359_A	0.694	0.89
393_T	396_A	0.693	0.89
229_T	293_L	0.692	0.89
320_L	373_A	0.691	0.89
320_L	371_V	0.691	0.89
407_P	422_F	0.691	0.89
411_N	415_A	0.688	0.89
251_L	319_I	0.687	0.89
10_M	44_L	0.686	0.88
305_R	359_A	0.683	0.88
253_L	321_L	0.682	0.88
152_R	156_A	0.681	0.88
239_M	264_I	0.680	0.88
181_T	268_A	0.680	0.88
353_Q	372_Y	0.680	0.88
12_A	109_I	0.678	0.88
221_P	224_E	0.678	0.88
25_L	337_I	0.677	0.88
55_L	339_W	0.675	0.88
46_E	91_T	0.672	0.87
226_G	292_R	0.671	0.87
103_V	123_R	0.671	0.87
233_A	237_G	0.671	0.87
178_I	209_V	0.670	0.87
17_Q	23_Q	0.670	0.87
86_Y	90_Y	0.669	0.87
261_T	290_L	0.665	0.87
244_P	369_T	0.664	0.87
55_L	79_Y	0.663	0.87
229_T	289_N	0.663	0.87
104_E	115_K	0.663	0.87
290_L	299_V	0.662	0.87
95_P	126_Q	0.661	0.87
280_E	287_Y	0.661	0.87
78_H	82_M	0.658	0.86
160_Q	412_L	0.657	0.86
179_N	266_E	0.657	0.86
55_L	58_L	0.655	0.86
54_T	144_L	0.654	0.86
131_E	135_E	0.653	0.86
253_L	319_I	0.652	0.86
84_G	122_L	0.652	0.86
195_A	220_L	0.651	0.86
251_L	274_V	0.651	0.86
177_R	266_E	0.651	0.86
93_I	97_A	0.650	0.86
62_I	81_I	0.650	0.86
238_C	373_A	0.650	0.86
15_V	51_V	0.649	0.86
179_N	229_T	0.649	0.86
384_L	388_A	0.648	0.85
175_W	208_A	0.648	0.85
123_R	127_R	0.646	0.85
194_E	209_V	0.641	0.85
19_V	82_M	0.639	0.85
268_A	297_A	0.636	0.84
396_A	428_K	0.635	0.84
265_L	273_V	0.635	0.84
79_Y	83_V	0.635	0.84
20_E	75_R	0.635	0.84
62_I	125_F	0.633	0.84
332_R	419_D	0.631	0.84
414_G	418_G	0.629	0.84
14_A	29_L	0.629	0.84
273_V	295_M	0.628	0.84
13_Q	32_L	0.627	0.84
185_R	188_W	0.627	0.84
42_A	46_E	0.627	0.84
185_R	205_Y	0.626	0.83
276_V	304_G	0.625	0.83
203_A	233_A	0.623	0.83
274_V	298_T	0.623	0.83
18_V	25_L	0.623	0.83
361_W	428_K	0.623	0.83
207_D	267_V	0.622	0.83
398_L	422_F	0.620	0.83
309_Q	359_A	0.619	0.83
66_M	121_V	0.618	0.83
103_V	116_G	0.617	0.83
17_Q	32_L	0.616	0.83
276_V	307_P	0.615	0.82
40_D	91_T	0.615	0.82
46_E	50_G	0.615	0.82
16_E	76_T	0.614	0.82
385_Q	392_R	0.614	0.82
278_I	301_Q	0.613	0.82
373_A	423_Y	0.613	0.82
235_A	421_F	0.612	0.82
87_Q	97_A	0.612	0.82
54_T	90_Y	0.611	0.82
112_P	115_K	0.611	0.82
319_I	360_I	0.611	0.82
77_V	118_I	0.610	0.82
112_P	117_L	0.609	0.82
84_G	88_L	0.609	0.82
247_G	270_E	0.608	0.82
401_T	425_K	0.607	0.82
289_N	292_R	0.605	0.81
77_V	114_L	0.605	0.81
207_D	263_H	0.602	0.81
334_H	340_L	0.600	0.81
118_I	121_V	0.599	0.81
26_S	334_H	0.599	0.81
74_Q	111_R	0.599	0.81
277_D	286_V	0.598	0.81
382_N	410_Q	0.598	0.81
15_V	79_Y	0.598	0.81
269_P	295_M	0.596	0.80
253_L	356_I	0.596	0.80
66_M	70_M	0.595	0.80
116_G	119_N	0.594	0.80
286_V	299_V	0.594	0.80
9_S	13_Q	0.593	0.80
43_L	92_R	0.592	0.80
57_Q	142_R	0.591	0.80
163_S	414_G	0.591	0.80
313_E	362_P	0.590	0.80
281_Q	285_R	0.590	0.80
409_K	423_Y	0.589	0.80
153_L	161_W	0.589	0.80
62_I	85_L	0.589	0.80
239_M	267_V	0.588	0.80
87_Q	94_P	0.586	0.79
250_I	318_R	0.586	0.79
322_D	375_C	0.586	0.79
223_F	226_G	0.585	0.79
407_P	410_Q	0.584	0.79
140_D	147_S	0.583	0.79
244_P	318_R	0.583	0.79
144_L	165_V	0.582	0.79
387_K	408_G	0.581	0.79
358_D	385_Q	0.580	0.79
114_L	117_L	0.580	0.79
257_P	282_R	0.579	0.78
350_A	380_E	0.579	0.78
18_V	22_G	0.578	0.78
105_G	109_I	0.576	0.78
20_E	79_Y	0.576	0.78
343_D	347_P	0.576	0.78
95_P	129_Q	0.574	0.78
257_P	286_V	0.574	0.78
299_V	302_G	0.574	0.78
406_Q	410_Q	0.573	0.78
143_Y	162_Q	0.572	0.78
177_R	229_T	0.571	0.78
141_A	144_L	0.571	0.78
55_L	59_D	0.571	0.78
161_W	164_I	0.570	0.77
260_K	322_D	0.568	0.77
383_S	422_F	0.564	0.77
47_L	98_A	0.562	0.76
153_L	164_I	0.562	0.76
187_S	190_A	0.561	0.76
403_T	410_Q	0.560	0.76
361_W	393_T	0.559	0.76
38_D	41_K	0.558	0.76
57_Q	144_L	0.557	0.76
144_L	339_W	0.557	0.76
26_S	30_P	0.556	0.76
23_Q	28_I	0.554	0.75
309_Q	363_H	0.553	0.75
347_P	350_A	0.553	0.75
176_L	230_V	0.552	0.75
164_I	412_L	0.551	0.75
75_R	79_Y	0.550	0.75
8_R	11_A	0.550	0.75
40_D	43_L	0.547	0.74
91_T	94_P	0.547	0.74
177_R	231_Q	0.547	0.74
245_Q	318_R	0.546	0.74
98_A	102_T	0.544	0.74
62_I	82_M	0.543	0.74
386_I	424_A	0.543	0.74
102_T	105_G	0.542	0.74
99_L	119_N	0.542	0.74
232_D	419_D	0.541	0.74
54_T	169_N	0.541	0.74
193_D	196_G	0.540	0.74
29_L	44_L	0.540	0.74
364_L	368_G	0.539	0.73
383_S	408_G	0.538	0.73
162_Q	165_V	0.538	0.73
144_L	169_N	0.538	0.73
344_R	348_E	0.537	0.73
99_L	103_V	0.537	0.73
135_E	138_A	0.536	0.73
367_G	428_K	0.534	0.73
307_P	362_P	0.534	0.73
248_E	268_A	0.534	0.73
142_R	166_E	0.533	0.73
51_V	55_L	0.532	0.72
139_S	162_Q	0.530	0.72
177_R	263_H	0.527	0.72
122_L	125_F	0.526	0.72
59_D	62_I	0.526	0.72
57_Q	61_L	0.526	0.72
16_E	19_V	0.526	0.72
319_I	362_P	0.524	0.71
149_L	331_I	0.524	0.71
273_V	290_L	0.523	0.71
385_Q	389_F	0.523	0.71
285_R	288_D	0.522	0.71
83_V	105_G	0.522	0.71
61_L	85_L	0.522	0.71
191_L	194_E	0.521	0.71
348_E	352_L	0.521	0.71
398_L	401_T	0.521	0.71
129_Q	133_L	0.520	0.71
10_M	13_Q	0.520	0.71
328_T	331_I	0.517	0.70
386_I	398_L	0.516	0.70
75_R	78_H	0.516	0.70
333_R	419_D	0.515	0.70
120_G	125_F	0.515	0.70
314_Q	428_K	0.513	0.70
338_K	421_F	0.512	0.70
145_H	338_K	0.510	0.69
151_K	154_Q	0.510	0.69
74_Q	113_Q	0.510	0.69
50_G	58_L	0.509	0.69
130_E	133_L	0.508	0.69
176_L	222_G	0.508	0.69
260_K	375_C	0.507	0.69
327_A	337_I	0.507	0.69
102_T	118_I	0.506	0.69
148_W	343_D	0.505	0.69
328_T	346_I	0.504	0.68
47_L	93_I	0.503	0.68
210_R	417_E	0.502	0.68
411_N	423_Y	0.502	0.68
135_E	140_D	0.501	0.68
15_V	83_V	0.500	0.68
25_L	336_D	0.500	0.68

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1sqgA	1	0.9883	100	0.243	Contact Map
2yxlA	1	0.9883	100	0.263	Contact Map
2frxA	1	0.648	100	0.441	Contact Map
1ixkA	1	0.669	100	0.453	Contact Map
3m6wA	2	0.6573	100	0.459	Contact Map
3m4xA	1	0.6434	100	0.462	Contact Map
2b9eA	1	0.5641	100	0.49	Contact Map
3ajdA	1	0.5548	100	0.549	Contact Map
4fzvA	1	0.6737	100	0.58	Contact Map
2vdvE	2	0.4359	99.9	0.803	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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