YEGD - ECOLI - GREMLIN Contacts

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YEGD - Uncharacterized chaperone protein YegD

UniProt:	P36928	Sequences: MFIGFDYGTANCSVAVMRDGKPHLLKMENDSTLLPSMLCAPTREAVSEWLYRHHDVPADDDETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEEVWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPEAITQAVIGRPINFQGLGGDEANTQAQGILERAAKRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGGGTTDCSLLLMGPQWRSRLDREASLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEKGIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDAREPEKVALLQKVWRQRLSYRLVRSAEECKIALSSVAETRASLPFISNELATLISQRGLESALSQPLTRILEQVQLALDNAQEKPDVIYLTGGSARSPLIKKALAEQLPGIPIAGGDDFGSVTAGLARWAEVVFR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12200
Length:	450 (401)
Sequences:	838 (596)
Seq/√Len:	29.8

ECOLI - YEGD DNAK HSCA HSCC
BACSU - DNAK
HALSA - DNAK

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
225_L	400_P	5.386	1.00
318_E	321_K	5.386	1.00
117_G	120_P	5.229	1.00
48_E	51_Y	4.342	1.00
117_G	121_Q	4.275	1.00
177_E	181_K	4.129	1.00
173_Q	177_E	4.096	1.00
151_Q	187_D	4.040	1.00
288_A	291_I	3.610	1.00
291_I	294_V	3.534	1.00
391_L	395_N	3.359	1.00
150_T	186_R	3.149	1.00
136_H	140_Q	3.138	1.00
409_S	412_S	3.056	1.00
284_P	288_A	2.969	1.00
281_P	284_P	2.923	1.00
371_Q	375_E	2.853	1.00
288_A	294_V	2.839	1.00
110_K	113_L	2.745	1.00
18_R	23_H	2.740	1.00
288_A	292_N	2.666	1.00
15_A	442_A	2.651	1.00
110_K	114_G	2.578	1.00
281_P	285_W	2.526	0.99
281_P	291_I	2.517	0.99
13_S	438_T	2.452	0.99
138_R	142_Q	2.444	0.99
313_V	323_A	2.423	0.99
344_C	369_I	2.354	0.99
46_V	50_L	2.346	0.99
281_P	288_A	2.344	0.99
48_E	52_R	2.305	0.99
160_F	176_L	2.244	0.99
264_L	341_A	2.204	0.98
355_R	368_L	2.177	0.98
390_Q	422_Q	2.162	0.98
281_P	294_V	2.160	0.98
169_N	172_A	2.150	0.98
202_E	238_R	2.149	0.98
3_I	14_V	2.134	0.98
14_V	137_I	2.075	0.98
267_L	367_T	2.061	0.97
404_Y	431_G	2.019	0.97
47_S	51_Y	2.016	0.97
5_F	152_A	2.015	0.97
385_I	415_I	1.961	0.97
362_S	365_L	1.927	0.96
169_N	173_Q	1.913	0.96
104_W	110_K	1.892	0.96
373_G	376_S	1.886	0.96
285_W	288_A	1.882	0.96
291_I	297_Q	1.858	0.95
39_C	103_V	1.856	0.95
107_K	114_G	1.852	0.95
294_V	297_Q	1.851	0.95
246_S	392_A	1.836	0.95
291_I	295_P	1.836	0.95
208_E	231_Q	1.817	0.95
128_D	182_R	1.800	0.94
266_P	269_G	1.799	0.94
284_P	291_I	1.782	0.94
284_P	287_N	1.781	0.94
281_P	287_N	1.753	0.94
12_C	137_I	1.744	0.93
420_A	428_I	1.728	0.93
225_L	396_A	1.726	0.93
285_W	294_V	1.718	0.93
284_P	294_V	1.716	0.93
154_I	180_A	1.704	0.93
155_G	441_L	1.676	0.92
303_S	307_R	1.665	0.92
166_D	169_N	1.607	0.90
309_L	329_W	1.589	0.90
208_E	227_L	1.563	0.89
287_N	291_I	1.546	0.88
403_I	419_L	1.541	0.88
107_K	113_L	1.502	0.87
195_V	226_L	1.496	0.87
111_S	114_G	1.472	0.86
370_S	373_G	1.471	0.86
275_E	280_L	1.463	0.85
130_V	437_V	1.459	0.85
49_W	52_R	1.459	0.85
287_N	294_V	1.448	0.85
281_P	289_V	1.442	0.85
386_L	418_A	1.426	0.84
6_D	9_T	1.423	0.84
201_Y	209_K	1.422	0.84
267_L	365_L	1.405	0.83
355_R	366_A	1.401	0.83
285_W	291_I	1.381	0.82
159_N	166_D	1.378	0.82
138_R	185_F	1.374	0.82
202_E	241_S	1.364	0.81
192_Y	224_S	1.349	0.80
289_V	292_N	1.336	0.80
158_I	334_S	1.321	0.79
46_V	49_W	1.310	0.78
298_S	301_Y	1.310	0.78
278_I	281_P	1.308	0.78
416_K	420_A	1.292	0.77
142_Q	149_I	1.291	0.77
391_L	394_D	1.291	0.77
166_D	170_T	1.282	0.77
104_W	113_L	1.266	0.76
167_E	171_Q	1.265	0.76
118_L	121_Q	1.262	0.76
109_P	113_L	1.258	0.75
409_S	419_L	1.255	0.75
219_G	222_D	1.253	0.75
289_V	294_V	1.250	0.75
127_E	179_A	1.247	0.75
282_I	291_I	1.245	0.75
4_G	251_G	1.244	0.75
344_C	356_A	1.237	0.74
337_L	405_L	1.225	0.73
213_V	330_R	1.224	0.73
282_I	285_W	1.217	0.73
418_A	422_Q	1.211	0.73
378_L	381_P	1.210	0.72
348_L	413_P	1.208	0.72
382_L	414_L	1.203	0.72
309_L	326_Q	1.191	0.71
357_S	366_A	1.190	0.71
104_W	108_S	1.185	0.71
282_I	288_A	1.179	0.70
3_I	149_I	1.179	0.70
105_F	108_S	1.171	0.70
104_W	107_K	1.170	0.70
287_N	292_N	1.168	0.70
103_V	113_L	1.162	0.69
410_A	442_A	1.154	0.69
406_T	436_S	1.153	0.69
213_V	303_S	1.149	0.68
258_A	381_P	1.146	0.68
109_P	114_G	1.144	0.68
107_K	110_K	1.136	0.68
179_A	182_R	1.135	0.68
26_K	29_N	1.127	0.67
103_V	241_S	1.106	0.65
26_K	370_S	1.101	0.65
167_E	170_T	1.098	0.65
157_P	217_G	1.096	0.65
106_V	114_G	1.094	0.65
154_I	188_V	1.094	0.65
238_R	241_S	1.093	0.65
342_E	346_I	1.092	0.64
260_A	338_V	1.091	0.64
290_A	294_V	1.085	0.64
213_V	445_A	1.084	0.64
47_S	50_L	1.083	0.64
106_V	110_K	1.083	0.64
283_L	288_A	1.082	0.64
378_L	409_S	1.076	0.63
386_L	422_Q	1.069	0.63
110_K	115_A	1.064	0.62
276_K	280_L	1.063	0.62
419_L	423_L	1.063	0.62
263_N	373_G	1.060	0.62
5_F	134_M	1.058	0.62
288_A	293_D	1.057	0.62
103_V	110_K	1.055	0.62
210_R	227_L	1.054	0.62
45_A	50_L	1.053	0.62
294_V	298_S	1.050	0.61
108_S	114_G	1.048	0.61
254_D	265_M	1.046	0.61
289_V	295_P	1.043	0.61
168_A	171_Q	1.042	0.61
308_L	311_D	1.039	0.61
336_R	360_F	1.036	0.60
105_F	110_K	1.030	0.60
165_G	168_A	1.030	0.60
227_L	241_S	1.026	0.60
378_L	414_L	1.023	0.59
403_I	423_L	1.020	0.59
5_F	129_L	1.016	0.59
108_S	113_L	1.016	0.59
353_E	368_L	0.996	0.57
213_V	309_L	0.994	0.57
213_V	273_E	0.993	0.57
281_P	292_N	0.989	0.57
417_K	421_E	0.988	0.57
47_S	52_R	0.988	0.57
14_V	149_I	0.985	0.56
201_Y	404_Y	0.983	0.56
123_V	415_I	0.983	0.56
200_D	404_Y	0.976	0.56
195_V	202_E	0.974	0.56
195_V	201_Y	0.966	0.55
251_G	409_S	0.961	0.55
89_G	110_K	0.959	0.54
168_A	172_A	0.954	0.54
193_E	218_G	0.950	0.54
6_D	222_D	0.945	0.53
142_Q	148_A	0.942	0.53
171_Q	175_I	0.939	0.53
112_F	115_A	0.939	0.53
374_L	412_S	0.938	0.53
106_V	109_P	0.933	0.52
30_D	376_S	0.933	0.52
214_V	251_G	0.932	0.52
4_G	126_F	0.932	0.52
193_E	220_T	0.931	0.52
209_K	427_P	0.930	0.52
26_K	144_Q	0.930	0.52
292_N	297_Q	0.929	0.52
114_G	117_G	0.928	0.52
370_S	376_S	0.927	0.52
216_I	358_L	0.925	0.52
45_A	48_E	0.924	0.52
48_E	53_H	0.919	0.51
201_Y	402_V	0.916	0.51
389_V	423_L	0.914	0.51
410_A	433_D	0.914	0.51
371_Q	413_P	0.914	0.51
378_L	412_S	0.911	0.51
4_G	36_S	0.909	0.50
5_F	12_C	0.907	0.50
288_A	297_Q	0.906	0.50
6_D	219_G	0.904	0.50
230_P	435_G	0.904	0.50
105_F	113_L	0.903	0.50
348_L	374_L	0.901	0.50
257_I	261_F	0.899	0.50
316_A	322_V	0.899	0.50
287_N	290_A	0.897	0.49
328_V	361_I	0.896	0.49
178_R	181_K	0.896	0.49
106_V	115_A	0.896	0.49
325_L	328_V	0.896	0.49
292_N	295_P	0.895	0.49
282_I	294_V	0.894	0.49
216_I	301_Y	0.893	0.49
256_D	408_G	0.892	0.49
193_E	217_G	0.892	0.49
157_P	193_E	0.892	0.49
47_S	53_H	0.890	0.49
286_W	290_A	0.889	0.49
6_D	220_T	0.887	0.49
48_E	89_G	0.886	0.49
107_K	111_S	0.885	0.49
267_L	358_L	0.883	0.48
161_Q	249_R	0.882	0.48
103_V	106_V	0.876	0.48
372_R	376_S	0.875	0.48
287_N	293_D	0.874	0.48
107_K	115_A	0.870	0.47
280_L	287_N	0.868	0.47
5_F	14_V	0.866	0.47
289_V	297_Q	0.866	0.47
260_A	265_M	0.864	0.47
265_M	269_G	0.864	0.47
348_L	371_Q	0.863	0.47
139_Q	150_T	0.861	0.47
13_S	168_A	0.858	0.46
189_V	444_W	0.858	0.46
103_V	114_G	0.857	0.46
297_Q	300_F	0.851	0.46
366_A	372_R	0.851	0.46
225_L	392_A	0.851	0.46
369_I	373_G	0.849	0.46
376_S	398_E	0.847	0.46
372_R	375_E	0.846	0.45
357_S	362_S	0.846	0.45
180_A	184_G	0.843	0.45
159_N	169_N	0.843	0.45
310_N	326_Q	0.842	0.45
106_V	113_L	0.842	0.45
340_S	360_F	0.842	0.45
216_I	415_I	0.839	0.45
25_L	144_Q	0.838	0.45
385_I	436_S	0.833	0.44
103_V	107_K	0.833	0.44
389_V	396_A	0.833	0.44
242_L	245_H	0.830	0.44
320_E	383_T	0.828	0.44
23_H	26_K	0.827	0.44
36_S	389_V	0.826	0.44
131_C	373_G	0.825	0.44
101_E	111_S	0.824	0.44
309_L	322_V	0.822	0.44
337_L	384_R	0.822	0.44
305_N	415_I	0.818	0.43
193_E	222_D	0.817	0.43
105_F	112_F	0.814	0.43
349_S	413_P	0.814	0.43
157_P	215_D	0.813	0.43
3_I	442_A	0.808	0.42
104_W	109_P	0.803	0.42
191_Q	202_E	0.800	0.42
156_R	194_P	0.799	0.42
343_E	399_K	0.799	0.42
53_H	355_R	0.797	0.42
191_Q	238_R	0.797	0.42
190_F	437_V	0.797	0.42
316_A	389_V	0.797	0.42
46_V	54_H	0.793	0.41
411_R	415_I	0.789	0.41
49_W	53_H	0.787	0.41
416_K	430_G	0.784	0.41
180_A	238_R	0.783	0.41
6_D	193_E	0.782	0.40
389_V	393_L	0.778	0.40
167_E	236_L	0.776	0.40
379_S	390_Q	0.776	0.40
405_L	416_K	0.773	0.40
193_E	219_G	0.771	0.40
35_P	409_S	0.767	0.39
392_A	410_A	0.766	0.39
284_P	292_N	0.766	0.39
323_A	327_K	0.766	0.39
172_A	256_D	0.765	0.39
357_S	421_E	0.764	0.39
50_L	53_H	0.757	0.39
411_R	433_D	0.757	0.39
201_Y	429_A	0.754	0.38
215_D	407_G	0.753	0.38
224_S	245_H	0.753	0.38
194_P	408_G	0.752	0.38
194_P	256_D	0.752	0.38
288_A	295_P	0.750	0.38
4_G	259_L	0.747	0.38
404_Y	436_S	0.745	0.38
4_G	266_P	0.744	0.38
371_Q	374_L	0.743	0.38
194_P	269_G	0.743	0.38
280_L	285_W	0.741	0.37
157_P	218_G	0.737	0.37
14_V	34_L	0.737	0.37
351_V	370_S	0.735	0.37
16_V	145_L	0.734	0.37
3_I	141_A	0.731	0.37
204_T	396_A	0.728	0.36
200_D	435_G	0.727	0.36
51_Y	89_G	0.727	0.36
338_V	341_A	0.727	0.36
351_V	417_K	0.726	0.36
392_A	396_A	0.726	0.36
145_L	149_I	0.726	0.36
202_E	237_D	0.724	0.36
13_S	444_W	0.717	0.36
158_I	378_L	0.716	0.36
343_E	355_R	0.716	0.36
274_T	280_L	0.714	0.35
293_D	297_Q	0.713	0.35
160_F	172_A	0.711	0.35
352_A	387_E	0.710	0.35
285_W	289_V	0.710	0.35
327_K	331_Q	0.706	0.35
217_G	220_T	0.706	0.35
157_P	220_T	0.706	0.35
256_D	269_G	0.706	0.35
3_I	25_L	0.706	0.35
160_F	195_V	0.705	0.35
113_L	437_V	0.705	0.35
139_Q	352_A	0.704	0.35
375_E	414_L	0.702	0.35
143_A	387_E	0.702	0.35
283_L	291_I	0.698	0.34
353_E	379_S	0.697	0.34
125_L	128_D	0.697	0.34
212_L	224_S	0.696	0.34
12_C	40_A	0.694	0.34
421_E	425_G	0.694	0.34
318_E	376_S	0.690	0.34
280_L	288_A	0.688	0.34
327_K	333_L	0.686	0.33
179_A	245_H	0.684	0.33
20_G	44_E	0.682	0.33
168_A	173_Q	0.679	0.33
296_A	299_D	0.678	0.33
129_L	137_I	0.678	0.33
284_P	290_A	0.676	0.33
188_V	310_N	0.676	0.33
371_Q	404_Y	0.675	0.33
211_V	406_T	0.673	0.33
239_E	250_I	0.672	0.32
242_L	443_R	0.672	0.32
347_A	395_N	0.671	0.32
195_V	238_R	0.670	0.32
198_G	228_M	0.669	0.32
193_E	215_D	0.668	0.32
259_L	409_S	0.667	0.32
191_Q	444_W	0.666	0.32
25_L	246_S	0.665	0.32
28_E	35_P	0.665	0.32
244_G	409_S	0.661	0.32
16_V	19_D	0.661	0.32
235_R	354_T	0.660	0.32
97_I	105_F	0.659	0.32
118_L	205_L	0.658	0.31
221_T	389_V	0.658	0.31
156_R	160_F	0.657	0.31
255_L	378_L	0.656	0.31
352_A	421_E	0.652	0.31
197_A	408_G	0.652	0.31
268_L	272_G	0.652	0.31
407_G	440_G	0.652	0.31
169_N	190_F	0.651	0.31
272_G	275_E	0.650	0.31
194_P	406_T	0.649	0.31
376_S	421_E	0.648	0.31
213_V	245_H	0.644	0.31
307_R	311_D	0.643	0.30
283_L	294_V	0.642	0.30
355_R	359_P	0.642	0.30
13_S	39_C	0.642	0.30
36_S	134_M	0.642	0.30
12_C	121_Q	0.640	0.30
328_V	333_L	0.638	0.30
166_D	369_I	0.638	0.30
160_F	194_P	0.635	0.30
218_G	222_D	0.633	0.30
26_K	30_D	0.633	0.30
352_A	370_S	0.632	0.30
155_G	190_F	0.631	0.30
285_W	290_A	0.630	0.30
357_S	363_N	0.630	0.30
199_L	263_N	0.629	0.30
130_V	134_M	0.628	0.29
358_L	362_S	0.627	0.29
327_K	360_F	0.627	0.29
295_P	298_S	0.627	0.29
147_E	390_Q	0.627	0.29
106_V	112_F	0.626	0.29
267_L	321_K	0.625	0.29
436_S	441_L	0.623	0.29
165_G	169_N	0.620	0.29
139_Q	231_Q	0.620	0.29
304_A	386_L	0.619	0.29
34_L	392_A	0.619	0.29
285_W	292_N	0.618	0.29
210_R	241_S	0.617	0.29
414_L	443_R	0.617	0.29
132_A	359_P	0.616	0.29
19_D	357_S	0.615	0.29
279_A	290_A	0.614	0.29
281_P	295_P	0.613	0.28
208_E	221_T	0.613	0.28
390_Q	394_D	0.612	0.28
409_S	418_A	0.608	0.28
98_D	357_S	0.608	0.28
358_L	361_I	0.607	0.28
244_G	335_Y	0.607	0.28
191_Q	208_E	0.606	0.28
156_R	190_F	0.604	0.28
364_E	395_N	0.603	0.28
368_L	379_S	0.603	0.28
340_S	343_E	0.603	0.28
6_D	218_G	0.602	0.28
176_L	183_A	0.602	0.28
192_Y	216_I	0.602	0.28
187_D	231_Q	0.601	0.28
5_F	180_A	0.598	0.28
173_Q	185_F	0.598	0.28
353_E	364_E	0.597	0.27
261_F	377_A	0.596	0.27
376_S	393_L	0.595	0.27
305_N	329_W	0.595	0.27
251_G	254_D	0.595	0.27
127_E	178_R	0.594	0.27
26_K	31_S	0.593	0.27
251_G	435_G	0.592	0.27
263_N	367_T	0.591	0.27
180_A	228_M	0.590	0.27
39_C	241_S	0.589	0.27
177_E	228_M	0.588	0.27
194_P	197_A	0.588	0.27
97_I	177_E	0.588	0.27
283_L	290_A	0.587	0.27
378_L	419_L	0.586	0.27
217_G	407_G	0.585	0.27
157_P	407_G	0.585	0.27
9_T	219_G	0.585	0.27
108_S	111_S	0.582	0.27
162_G	249_R	0.580	0.26
15_A	178_R	0.577	0.26
352_A	373_G	0.576	0.26
172_A	184_G	0.576	0.26
180_A	183_A	0.576	0.26
6_D	11_N	0.576	0.26
209_K	445_A	0.576	0.26
49_W	54_H	0.576	0.26
254_D	342_E	0.575	0.26
197_A	256_D	0.575	0.26
180_A	185_F	0.574	0.26
379_S	414_L	0.574	0.26
103_V	109_P	0.574	0.26
343_E	347_A	0.572	0.26
131_C	182_R	0.572	0.26
213_V	386_L	0.571	0.26
6_D	157_P	0.571	0.26
6_D	217_G	0.571	0.26
213_V	264_L	0.571	0.26
8_G	215_D	0.571	0.26
191_Q	195_V	0.571	0.26
4_G	348_L	0.571	0.26
200_D	409_S	0.570	0.26
217_G	222_D	0.569	0.26
157_P	222_D	0.569	0.26
191_Q	199_L	0.569	0.26
138_R	141_A	0.567	0.26
35_P	107_K	0.567	0.26
36_S	348_L	0.566	0.26
231_Q	421_E	0.566	0.26
317_R	321_K	0.565	0.25
201_Y	406_T	0.563	0.25
157_P	219_G	0.562	0.25
379_S	383_T	0.561	0.25
211_V	439_A	0.560	0.25
135_L	139_Q	0.559	0.25
416_K	428_I	0.559	0.25
352_A	391_L	0.559	0.25
274_T	279_A	0.559	0.25
25_L	268_L	0.559	0.25
300_F	303_S	0.558	0.25
15_A	42_T	0.558	0.25
251_G	264_L	0.558	0.25
438_T	444_W	0.557	0.25
436_S	440_G	0.557	0.25
126_F	437_V	0.556	0.25
203_A	443_R	0.555	0.25
38_L	245_H	0.555	0.25
198_G	201_Y	0.555	0.25
308_L	314_R	0.555	0.25
147_E	394_D	0.555	0.25
40_A	133_M	0.554	0.25
361_I	365_L	0.553	0.25
311_D	314_R	0.552	0.25
281_P	297_Q	0.552	0.25
211_V	410_A	0.551	0.25
325_L	334_S	0.546	0.24
180_A	237_D	0.546	0.24
410_A	435_G	0.544	0.24
262_K	377_A	0.544	0.24
156_R	256_D	0.543	0.24
272_G	321_K	0.542	0.24
286_W	292_N	0.542	0.24
295_P	332_R	0.542	0.24
183_A	359_P	0.542	0.24
51_Y	54_H	0.541	0.24
314_R	368_L	0.540	0.24
195_V	224_S	0.540	0.24
188_V	306_G	0.540	0.24
245_H	409_S	0.539	0.24
155_G	269_G	0.537	0.24
283_L	287_N	0.537	0.24
104_W	115_A	0.535	0.24
257_I	318_E	0.535	0.24
411_R	442_A	0.534	0.24
186_R	320_E	0.533	0.24
13_S	435_G	0.533	0.24
251_G	436_S	0.532	0.24
109_P	115_A	0.532	0.24
274_T	277_G	0.531	0.24
315_D	403_I	0.530	0.23
281_P	290_A	0.530	0.23
192_Y	221_T	0.529	0.23
149_I	410_A	0.529	0.23
363_N	394_D	0.529	0.23
389_V	392_A	0.528	0.23
30_D	347_A	0.528	0.23
405_L	430_G	0.528	0.23
352_A	371_Q	0.526	0.23
140_Q	262_K	0.525	0.23
36_S	371_Q	0.524	0.23
45_A	233_R	0.523	0.23
31_S	134_M	0.521	0.23
103_V	108_S	0.521	0.23
147_E	372_R	0.520	0.23
98_D	331_Q	0.520	0.23
199_L	389_V	0.520	0.23
19_D	23_H	0.519	0.23
264_L	344_C	0.518	0.23
301_Y	335_Y	0.517	0.23
163_L	337_L	0.517	0.23
132_A	347_A	0.516	0.23
156_R	269_G	0.516	0.23
286_W	294_V	0.513	0.22
199_L	381_P	0.512	0.22
5_F	214_V	0.512	0.22
156_R	441_L	0.512	0.22
221_T	396_A	0.511	0.22
269_G	408_G	0.511	0.22
386_L	421_E	0.511	0.22
125_L	403_I	0.510	0.22
175_I	216_I	0.510	0.22
375_E	417_K	0.509	0.22
5_F	159_N	0.508	0.22
195_V	241_S	0.508	0.22
215_D	220_T	0.508	0.22
156_R	408_G	0.508	0.22
349_S	406_T	0.508	0.22
181_K	350_S	0.507	0.22
16_V	385_I	0.507	0.22
395_N	417_K	0.505	0.22
247_G	252_G	0.505	0.22
422_Q	425_G	0.505	0.22
429_A	435_G	0.505	0.22
4_G	442_A	0.502	0.22
133_M	223_C	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4fl9A	1	0.82	100	0.48	Contact Map
4jneA	2	0.8222	100	0.481	Contact Map
3d2fA	1	0.8222	100	0.486	Contact Map
3i33A	1	0.8178	100	0.503	Contact Map
2v7yA	1	0.7578	100	0.507	Contact Map
4kboA	1	0.8111	100	0.515	Contact Map
4rtfD	1	0.7533	100	0.522	Contact Map
4j8fA	2	0.82	100	0.527	Contact Map
4gniA	2	0.8111	100	0.561	Contact Map
3qfuA	1	0.8178	100	0.569	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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