AHPF - ECOLI - GREMLIN Contacts

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AHPF - Alkyl hydroperoxide reductase subunit F

UniProt:	P35340	Sequences: MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPSKEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQNEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTKTA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11385
Length:	521 (402)
Sequences:	1537 (820)
Seq/√Len:	40.9

ECOLI - AHPF YGFT AEGA GLTD
BACSU - DHNA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
463_E	471_I	6.157	1.00
416_E	428_E	4.442	1.00
368_V	383_L	4.176	1.00
503_E	506_K	3.969	1.00
357_R	379_E	3.911	1.00
123_T	151_H	3.592	1.00
118_D	148_R	3.477	1.00
418_K	425_V	3.336	1.00
430_R	437_I	3.153	1.00
418_K	428_E	3.002	1.00
125_Y	153_A	2.987	1.00
359_A	442_L	2.841	1.00
428_E	439_N	2.829	1.00
484_F	514_Y	2.731	1.00
394_Q	398_D	2.723	1.00
426_G	439_N	2.710	1.00
275_V	278_D	2.688	1.00
417_V	445_I	2.662	1.00
418_K	426_G	2.660	1.00
400_L	408_I	2.658	1.00
462_V	480_V	2.654	1.00
455_T	489_C	2.620	1.00
339_T	419_G	2.618	1.00
357_R	441_E	2.597	1.00
239_G	285_I	2.583	1.00
357_R	380_H	2.578	1.00
420_D	425_V	2.556	1.00
400_L	406_V	2.548	1.00
384_L	440_I	2.498	1.00
332_P	416_E	2.495	1.00
329_M	417_V	2.443	1.00
473_D	477_E	2.437	1.00
106_Q	110_E	2.425	1.00
401_R	408_I	2.406	1.00
227_A	319_I	2.387	1.00
418_K	439_N	2.353	1.00
409_I	412_A	2.328	1.00
120_E	150_K	2.316	1.00
417_V	424_V	2.277	1.00
211_D	236_I	2.248	1.00
122_E	154_I	2.238	1.00
380_H	407_D	2.209	1.00
368_V	400_L	2.163	0.99
429_Y	438_H	2.163	0.99
357_R	443_A	2.146	0.99
182_G	186_M	2.139	0.99
154_I	196_D	2.104	0.99
480_V	483_V	2.069	0.99
413_Q	430_R	2.056	0.99
212_A	237_R	2.026	0.99
465_N	469_E	1.999	0.99
397_Q	401_R	1.987	0.99
359_A	427_L	1.976	0.99
149_I	152_T	1.969	0.99
412_A	429_Y	1.950	0.99
291_S	308_A	1.933	0.99
173_A	180_E	1.925	0.99
348_C	374_L	1.923	0.99
399_K	402_S	1.909	0.99
312_V	482_G	1.891	0.98
322_T	489_C	1.873	0.98
492_V	503_E	1.850	0.98
459_E	464_R	1.848	0.98
359_A	440_I	1.847	0.98
396_L	400_L	1.835	0.98
319_I	511_A	1.728	0.97
428_E	437_I	1.709	0.97
411_N	433_V	1.695	0.97
329_M	445_I	1.689	0.97
386_F	432_R	1.689	0.97
161_N	165_D	1.654	0.96
104_E	141_L	1.649	0.96
263_K	279_E	1.636	0.96
431_D	438_H	1.633	0.96
397_Q	400_L	1.621	0.96
218_V	320_V	1.610	0.96
109_L	113_R	1.594	0.96
116_D	148_R	1.593	0.96
245_F	277_V	1.591	0.96
318_I	483_V	1.549	0.95
115_I	195_I	1.547	0.95
290_A	293_L	1.546	0.95
392_A	396_L	1.543	0.95
379_E	443_A	1.518	0.94
319_I	486_A	1.506	0.94
269_L	501_T	1.499	0.94
122_E	166_R	1.486	0.94
243_E	289_S	1.472	0.93
430_R	435_G	1.471	0.93
218_V	311_A	1.454	0.93
498_I	501_T	1.446	0.93
107_S	206_E	1.440	0.92
328_N	335_D	1.419	0.92
329_M	361_I	1.413	0.92
425_V	439_N	1.395	0.91
303_H	483_V	1.391	0.91
225_A	277_V	1.388	0.91
415_T	430_R	1.388	0.91
167_N	422_S	1.378	0.91
271_G	275_V	1.372	0.91
161_N	164_T	1.366	0.90
119_F	195_I	1.346	0.90
215_V	319_I	1.332	0.89
237_R	283_D	1.327	0.89
250_L	270_A	1.322	0.89
123_T	153_A	1.313	0.88
292_K	306_E	1.303	0.88
287_S	462_V	1.300	0.88
104_E	109_L	1.298	0.88
393_D	397_Q	1.293	0.88
397_Q	402_S	1.288	0.87
419_G	425_V	1.282	0.87
124_Y	162_E	1.278	0.87
233_R	276_H	1.277	0.87
306_E	312_V	1.271	0.87
420_D	423_K	1.270	0.87
300_G	304_Q	1.270	0.87
318_I	434_S	1.266	0.87
241_M	315_A	1.262	0.86
270_A	273_L	1.262	0.86
155_D	158_T	1.259	0.86
210_R	283_D	1.252	0.86
482_G	514_Y	1.251	0.86
278_D	284_V	1.247	0.86
102_S	141_L	1.242	0.85
396_L	399_K	1.242	0.85
321_A	486_A	1.241	0.85
220_S	242_G	1.232	0.85
293_L	457_W	1.229	0.85
396_L	402_S	1.226	0.85
108_L	112_I	1.226	0.85
240_L	281_D	1.219	0.84
285_I	288_Q	1.218	0.84
141_L	188_L	1.217	0.84
168_V	175_F	1.210	0.84
210_R	285_I	1.202	0.84
274_K	278_D	1.197	0.83
474_A	491_T	1.195	0.83
328_N	334_E	1.194	0.83
387_A	391_K	1.185	0.83
276_H	280_Y	1.175	0.82
216_L	315_A	1.173	0.82
505_A	508_S	1.166	0.82
213_Y	239_G	1.164	0.82
120_E	123_T	1.158	0.81
330_N	334_E	1.156	0.81
250_L	271_G	1.149	0.81
476_C	506_K	1.146	0.80
193_A	202_R	1.145	0.80
388_P	411_N	1.138	0.80
116_D	119_F	1.134	0.80
340_K	423_K	1.133	0.80
214_D	237_R	1.128	0.79
291_S	306_E	1.120	0.79
167_N	170_G	1.107	0.78
382_T	407_D	1.106	0.78
353_F	444_G	1.104	0.78
290_A	483_V	1.102	0.78
393_D	396_L	1.095	0.77
262_P	279_E	1.092	0.77
275_V	279_E	1.091	0.77
142_M	188_L	1.089	0.77
141_L	144_V	1.086	0.77
329_M	447_V	1.084	0.77
102_S	105_A	1.081	0.76
108_L	192_V	1.071	0.76
121_F	176_V	1.071	0.76
348_C	446_F	1.070	0.76
477_E	514_Y	1.055	0.75
212_A	302_L	1.054	0.75
217_I	224_G	1.054	0.75
152_T	155_D	1.054	0.75
128_S	157_G	1.044	0.74
169_M	173_A	1.043	0.74
119_F	176_V	1.042	0.74
325_K	456_N	1.042	0.74
203_A	309_S	1.041	0.74
189_T	286_D	1.040	0.74
392_A	397_Q	1.032	0.73
346_P	350_G	1.030	0.73
345_C	349_D	1.030	0.73
409_I	429_Y	1.027	0.73
218_V	318_I	1.024	0.72
476_C	510_S	1.020	0.72
226_A	259_I	1.018	0.72
217_I	227_A	1.014	0.72
170_G	173_A	1.011	0.71
320_V	464_R	0.998	0.70
109_L	141_L	0.995	0.70
396_L	401_R	0.992	0.70
401_R	410_L	0.988	0.70
236_I	512_F	0.985	0.69
345_C	348_C	0.971	0.68
384_L	429_Y	0.970	0.68
302_L	314_K	0.958	0.67
185_R	376_G	0.951	0.67
407_D	410_L	0.951	0.67
431_D	434_S	0.946	0.66
217_I	501_T	0.941	0.66
392_A	400_L	0.938	0.66
240_L	284_V	0.937	0.66
167_N	173_A	0.931	0.65
167_N	183_Q	0.931	0.65
357_R	440_I	0.928	0.65
305_I	318_I	0.927	0.65
478_T	485_A	0.923	0.64
477_E	484_F	0.919	0.64
119_F	177_N	0.914	0.64
223_A	486_A	0.914	0.64
426_G	441_E	0.914	0.64
378_V	382_T	0.912	0.63
417_V	447_V	0.909	0.63
394_Q	397_Q	0.903	0.63
470_I	489_C	0.900	0.62
142_M	149_I	0.899	0.62
414_T	445_I	0.899	0.62
164_T	167_N	0.896	0.62
131_N	135_V	0.895	0.62
160_Q	164_T	0.895	0.62
217_I	319_I	0.893	0.62
402_S	406_V	0.887	0.61
375_A	406_V	0.885	0.61
368_V	402_S	0.884	0.61
342_V	417_V	0.883	0.61
328_N	344_Y	0.879	0.61
190_E	194_K	0.878	0.60
391_K	467_M	0.876	0.60
104_E	108_L	0.874	0.60
290_A	457_W	0.871	0.60
304_Q	312_V	0.870	0.60
412_A	415_T	0.868	0.60
465_N	491_T	0.868	0.60
277_V	282_V	0.867	0.59
304_Q	314_K	0.866	0.59
391_K	396_L	0.861	0.59
128_S	155_D	0.861	0.59
393_D	400_L	0.860	0.59
367_G	385_E	0.854	0.58
393_D	399_K	0.852	0.58
167_N	423_K	0.852	0.58
131_N	185_R	0.851	0.58
321_A	328_N	0.849	0.58
472_I	503_E	0.848	0.58
383_L	400_L	0.842	0.57
472_I	490_T	0.841	0.57
102_S	192_V	0.833	0.56
232_A	282_V	0.833	0.56
162_E	166_R	0.830	0.56
506_K	510_S	0.826	0.56
102_S	108_L	0.825	0.56
203_A	206_E	0.825	0.56
463_E	479_N	0.823	0.55
210_R	232_A	0.822	0.55
397_Q	408_I	0.818	0.55
214_D	314_K	0.817	0.55
224_G	240_L	0.814	0.55
218_V	305_I	0.812	0.54
106_Q	394_Q	0.812	0.54
484_F	512_F	0.812	0.54
160_Q	230_Y	0.812	0.54
144_V	156_G	0.810	0.54
371_A	383_L	0.810	0.54
145_L	438_H	0.810	0.54
140_N	156_G	0.809	0.54
368_V	387_A	0.808	0.54
110_E	206_E	0.807	0.54
384_L	413_Q	0.804	0.54
107_S	110_E	0.803	0.54
299_E	302_L	0.802	0.54
359_A	384_L	0.802	0.54
119_F	123_T	0.801	0.53
292_K	302_L	0.800	0.53
163_I	170_G	0.798	0.53
473_D	510_S	0.796	0.53
110_E	195_I	0.795	0.53
109_L	145_L	0.790	0.52
401_R	407_D	0.789	0.52
391_K	400_L	0.786	0.52
241_M	307_T	0.782	0.52
502_G	506_K	0.778	0.51
321_A	384_L	0.772	0.51
204_A	279_E	0.772	0.51
303_H	321_A	0.771	0.51
391_K	397_Q	0.771	0.51
383_L	388_P	0.770	0.51
278_D	286_D	0.770	0.51
407_D	438_H	0.768	0.50
240_L	440_I	0.768	0.50
309_S	314_K	0.763	0.50
281_D	302_L	0.762	0.50
154_I	166_R	0.761	0.50
397_Q	406_V	0.760	0.50
509_L	513_D	0.759	0.50
476_C	503_E	0.757	0.49
182_G	190_E	0.757	0.49
210_R	237_R	0.755	0.49
266_G	446_F	0.755	0.49
398_D	401_R	0.755	0.49
391_K	394_Q	0.754	0.49
305_I	459_E	0.753	0.49
320_V	387_A	0.752	0.49
248_Q	496_Q	0.751	0.49
182_G	185_R	0.750	0.49
108_L	189_T	0.750	0.49
342_V	440_I	0.749	0.49
123_T	140_N	0.748	0.49
389_E	394_Q	0.747	0.48
184_G	187_T	0.742	0.48
231_S	508_S	0.741	0.48
475_K	510_S	0.739	0.48
493_P	506_K	0.738	0.48
119_F	317_S	0.738	0.48
299_E	304_Q	0.737	0.48
491_T	499_I	0.737	0.48
212_A	435_G	0.737	0.48
491_T	503_E	0.736	0.47
248_Q	345_C	0.735	0.47
472_I	476_C	0.735	0.47
419_G	486_A	0.735	0.47
367_G	386_F	0.734	0.47
212_A	236_I	0.733	0.47
305_I	433_V	0.732	0.47
110_E	113_R	0.731	0.47
330_N	428_E	0.731	0.47
115_I	149_I	0.731	0.47
109_L	112_I	0.731	0.47
288_Q	305_I	0.729	0.47
98_G	102_S	0.729	0.47
263_K	270_A	0.729	0.47
389_E	466_R	0.728	0.47
300_G	303_H	0.728	0.47
393_D	398_D	0.722	0.46
271_G	274_K	0.721	0.46
102_S	145_L	0.720	0.46
341_G	348_C	0.718	0.46
239_G	283_D	0.718	0.46
458_L	464_R	0.716	0.46
424_V	445_I	0.716	0.46
135_V	502_G	0.715	0.45
368_V	406_V	0.715	0.45
307_T	458_L	0.715	0.45
431_D	436_D	0.713	0.45
285_I	309_S	0.711	0.45
452_L	456_N	0.710	0.45
213_Y	285_I	0.709	0.45
110_E	114_H	0.709	0.45
317_S	515_L	0.709	0.45
153_A	262_P	0.708	0.45
173_A	250_L	0.708	0.45
287_S	418_K	0.707	0.45
303_H	318_I	0.705	0.45
259_I	501_T	0.704	0.44
367_G	414_T	0.703	0.44
351_P	502_G	0.702	0.44
110_E	483_V	0.702	0.44
217_I	383_L	0.701	0.44
128_S	213_Y	0.699	0.44
158_T	174_V	0.699	0.44
387_A	467_M	0.694	0.44
460_G	463_E	0.692	0.43
155_D	261_V	0.690	0.43
124_Y	175_F	0.689	0.43
472_I	492_V	0.689	0.43
203_A	279_E	0.688	0.43
292_K	299_E	0.686	0.43
117_G	123_T	0.685	0.43
231_S	236_I	0.684	0.43
395_V	399_K	0.684	0.43
124_Y	505_A	0.683	0.43
368_V	384_L	0.682	0.42
110_E	463_E	0.682	0.42
139_L	174_V	0.681	0.42
245_F	286_D	0.680	0.42
307_T	483_V	0.680	0.42
412_A	438_H	0.680	0.42
174_V	182_G	0.680	0.42
110_E	217_I	0.679	0.42
261_V	264_T	0.677	0.42
182_G	191_I	0.675	0.42
116_D	123_T	0.671	0.41
162_E	171_V	0.670	0.41
326_W	344_Y	0.670	0.41
225_A	240_L	0.670	0.41
226_A	306_E	0.668	0.41
464_R	467_M	0.667	0.41
104_E	192_V	0.666	0.41
346_P	349_D	0.664	0.41
211_D	237_R	0.663	0.41
303_H	480_V	0.662	0.41
335_D	428_E	0.662	0.41
213_Y	316_R	0.662	0.41
145_L	192_V	0.662	0.41
421_G	427_L	0.661	0.41
391_K	398_D	0.661	0.41
372_I	402_S	0.660	0.40
335_D	344_Y	0.658	0.40
477_E	482_G	0.657	0.40
391_K	402_S	0.657	0.40
227_A	321_A	0.656	0.40
331_V	342_V	0.656	0.40
195_I	199_A	0.655	0.40
360_V	385_E	0.655	0.40
383_L	387_A	0.654	0.40
168_V	497_I	0.654	0.40
113_R	145_L	0.654	0.40
128_S	168_V	0.649	0.39
144_V	186_M	0.648	0.39
264_T	496_Q	0.648	0.39
462_V	483_V	0.648	0.39
328_N	445_I	0.648	0.39
169_M	238_T	0.646	0.39
395_V	405_N	0.646	0.39
413_Q	432_R	0.645	0.39
293_L	318_I	0.643	0.39
150_K	191_I	0.643	0.39
306_E	309_S	0.642	0.39
412_A	427_L	0.641	0.39
430_R	436_D	0.641	0.39
216_L	241_M	0.640	0.39
234_K	512_F	0.639	0.39
263_K	508_S	0.638	0.39
393_D	402_S	0.638	0.39
120_E	152_T	0.636	0.38
421_G	441_E	0.636	0.38
417_V	439_N	0.636	0.38
300_G	481_K	0.635	0.38
464_R	468_G	0.635	0.38
480_V	484_F	0.634	0.38
303_H	320_V	0.631	0.38
343_T	353_F	0.631	0.38
126_S	136_V	0.630	0.38
274_K	286_D	0.628	0.38
384_L	387_A	0.627	0.38
291_S	302_L	0.626	0.37
394_Q	477_E	0.624	0.37
262_P	275_V	0.622	0.37
513_D	516_I	0.621	0.37
172_P	346_P	0.620	0.37
132_C	488_D	0.617	0.37
130_H	157_G	0.616	0.37
236_I	376_G	0.613	0.36
472_I	491_T	0.611	0.36
230_Y	509_L	0.610	0.36
184_G	502_G	0.610	0.36
244_R	287_S	0.610	0.36
226_A	275_V	0.609	0.36
170_G	174_V	0.609	0.36
435_G	494_Y	0.608	0.36
233_R	326_W	0.606	0.36
383_L	386_F	0.606	0.36
492_V	506_K	0.604	0.36
415_T	437_I	0.604	0.36
213_Y	287_S	0.604	0.36
199_A	202_R	0.602	0.35
168_V	316_R	0.602	0.35
240_L	415_T	0.602	0.35
161_N	170_G	0.601	0.35
220_S	512_F	0.600	0.35
385_E	388_P	0.600	0.35
398_D	402_S	0.600	0.35
219_G	487_G	0.599	0.35
148_R	445_I	0.599	0.35
286_D	321_A	0.598	0.35
462_V	479_N	0.597	0.35
283_D	462_V	0.595	0.35
384_L	411_N	0.594	0.35
303_H	508_S	0.594	0.35
392_A	395_V	0.594	0.35
306_E	433_V	0.594	0.35
206_E	389_E	0.592	0.35
360_V	371_A	0.592	0.35
245_F	427_L	0.590	0.34
319_I	507_A	0.588	0.34
422_S	425_V	0.588	0.34
278_D	471_I	0.585	0.34
104_E	188_L	0.585	0.34
365_N	370_A	0.584	0.34
318_I	321_A	0.583	0.34
355_G	379_E	0.582	0.34
214_D	231_S	0.581	0.34
315_A	319_I	0.579	0.33
223_A	319_I	0.578	0.33
98_G	101_P	0.577	0.33
328_N	339_T	0.577	0.33
285_I	321_A	0.576	0.33
206_E	428_E	0.575	0.33
221_G	487_G	0.573	0.33
210_R	213_Y	0.571	0.33
222_P	364_G	0.571	0.33
229_I	276_H	0.568	0.33
387_A	415_T	0.568	0.33
101_P	115_I	0.567	0.33
107_S	301_G	0.567	0.33
313_L	477_E	0.566	0.32
334_E	342_V	0.565	0.32
219_G	323_G	0.565	0.32
366_S	369_E	0.565	0.32
312_V	430_R	0.563	0.32
123_T	139_L	0.562	0.32
341_G	345_C	0.562	0.32
322_T	453_P	0.561	0.32
341_G	364_G	0.560	0.32
367_G	497_I	0.560	0.32
114_H	192_V	0.560	0.32
472_I	485_A	0.559	0.32
123_T	185_R	0.558	0.32
414_T	427_L	0.558	0.32
263_K	387_A	0.557	0.32
309_S	481_K	0.556	0.32
343_T	377_I	0.555	0.32
417_V	421_G	0.554	0.31
230_Y	363_G	0.553	0.31
105_A	110_E	0.552	0.31
149_I	470_I	0.551	0.31
137_Q	140_N	0.551	0.31
427_L	461_A	0.551	0.31
230_Y	248_Q	0.551	0.31
385_E	432_R	0.550	0.31
104_E	189_T	0.549	0.31
234_K	509_L	0.548	0.31
172_P	248_Q	0.548	0.31
380_H	443_A	0.548	0.31
430_R	433_V	0.548	0.31
355_G	363_G	0.548	0.31
212_A	215_V	0.547	0.31
293_L	483_V	0.547	0.31
341_G	349_D	0.547	0.31
387_A	500_A	0.546	0.31
186_M	190_E	0.546	0.31
116_D	120_E	0.545	0.31
265_E	269_L	0.545	0.31
391_K	395_V	0.544	0.31
140_N	153_A	0.543	0.31
219_G	247_G	0.542	0.31
162_E	165_D	0.541	0.30
292_K	301_G	0.540	0.30
221_G	323_G	0.540	0.30
442_L	445_I	0.539	0.30
323_G	487_G	0.539	0.30
189_T	192_V	0.539	0.30
264_T	267_Q	0.538	0.30
360_V	367_G	0.538	0.30
415_T	418_K	0.537	0.30
277_V	303_H	0.537	0.30
385_E	390_M	0.536	0.30
128_S	170_G	0.536	0.30
104_E	145_L	0.536	0.30
123_T	376_G	0.535	0.30
271_G	508_S	0.535	0.30
196_D	207_L	0.535	0.30
405_N	408_I	0.534	0.30
331_V	477_E	0.533	0.30
357_R	382_T	0.533	0.30
264_T	367_G	0.532	0.30
330_N	459_E	0.531	0.30
301_G	306_E	0.530	0.30
240_L	277_V	0.530	0.30
108_L	188_L	0.528	0.29
213_Y	237_R	0.527	0.29
212_A	315_A	0.526	0.29
268_K	274_K	0.526	0.29
307_T	310_G	0.525	0.29
478_T	482_G	0.523	0.29
158_T	176_V	0.523	0.29
340_K	422_S	0.523	0.29
275_V	299_E	0.521	0.29
105_A	108_L	0.520	0.29
261_V	273_L	0.519	0.29
279_E	508_S	0.517	0.29
461_A	484_F	0.517	0.29
330_N	498_I	0.516	0.29
221_G	247_G	0.516	0.29
434_S	438_H	0.516	0.29
247_G	487_G	0.515	0.28
194_K	292_K	0.514	0.28
220_S	245_F	0.512	0.28
326_W	497_I	0.512	0.28
400_L	405_N	0.512	0.28
394_Q	404_K	0.511	0.28
244_R	260_S	0.511	0.28
305_I	308_A	0.510	0.28
292_K	305_I	0.509	0.28
370_A	373_D	0.509	0.28
303_H	357_R	0.509	0.28
399_K	500_A	0.508	0.28
119_F	193_A	0.508	0.28
130_H	145_L	0.507	0.28
277_V	507_A	0.506	0.28
462_V	500_A	0.506	0.28
196_D	199_A	0.506	0.28
241_M	290_A	0.505	0.28
433_V	437_I	0.505	0.28
348_C	370_A	0.505	0.28
462_V	514_Y	0.504	0.28
491_T	506_K	0.504	0.28
166_R	175_F	0.504	0.28
292_K	483_V	0.503	0.28
311_A	316_R	0.503	0.28
132_C	222_P	0.503	0.28
227_A	231_S	0.502	0.27
208_N	312_V	0.502	0.27
241_M	270_A	0.501	0.27
123_T	141_L	0.500	0.27

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1hyuA	2	1	100	0.42	Contact Map
2vdcG	1	0.762	100	0.556	Contact Map
1gteA	4	0.8676	100	0.557	Contact Map
4ylfB	1	0.7965	100	0.564	Contact Map
1fl2A	2	0.595	100	0.648	Contact Map
3ctyA	2	0.5816	100	0.667	Contact Map
2q7vA	2	0.595	100	0.667	Contact Map
2a87A	2	0.5931	100	0.669	Contact Map
4up3A	2	0.5797	100	0.669	Contact Map
2q0lA	2	0.5797	100	0.67	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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