HOFQ - ECOLI - GREMLIN Contacts

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HOFQ - Putative DNA transport protein HofQ

UniProt:	P34749	Sequences: MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12113
Length:	412 (387)
Sequences:	2666 (2015)
Seq/√Len:	102.4

ECOLI - HOFQ GSPD

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
374_S	379_G	7.282	1.00
386_Q	389_R	6.572	1.00
272_P	305_E	5.274	1.00
374_S	380_D	5.132	1.00
381_I	384_F	4.501	1.00
280_E	299_E	3.783	1.00
120_R	168_E	3.313	1.00
321_H	347_E	3.225	1.00
280_E	298_K	3.111	1.00
357_T	405_T	3.003	1.00
285_V	296_E	2.815	1.00
124_L	132_L	2.662	1.00
159_D	163_A	2.642	1.00
320_L	404_I	2.633	1.00
36_V	74_V	2.598	1.00
276_K	299_E	2.585	1.00
272_P	307_T	2.482	1.00
353_K	356_E	2.461	1.00
370_S	393_K	2.425	1.00
157_L	167_L	2.420	1.00
282_P	297_F	2.400	1.00
62_L	70_A	2.280	1.00
193_K	396_E	2.256	1.00
188_V	403_F	2.242	1.00
197_E	392_G	2.199	1.00
30_D	57_T	2.191	1.00
265_L	346_I	2.187	1.00
315_R	353_K	2.141	1.00
189_T	344_Q	2.119	1.00
372_Q	389_R	2.116	1.00
133_A	137_E	2.098	1.00
31_V	36_V	2.056	1.00
385_G	389_R	2.028	1.00
321_H	345_E	2.021	1.00
65_V	70_A	1.996	1.00
181_V	310_V	1.995	1.00
269_H	310_V	1.972	1.00
280_E	297_F	1.955	1.00
193_K	255_Q	1.942	1.00
377_L	381_I	1.893	1.00
352_V	358_L	1.889	1.00
141_S	159_D	1.888	1.00
366_R	397_R	1.885	1.00
62_L	65_V	1.846	1.00
161_K	165_S	1.845	1.00
184_S	407_R	1.833	1.00
66_P	69_Q	1.827	1.00
122_I	157_L	1.821	1.00
129_A	153_N	1.810	1.00
366_R	395_D	1.791	1.00
144_G	159_D	1.777	1.00
277_Q	363_I	1.763	1.00
303_G	323_S	1.756	1.00
51_S	96_W	1.746	1.00
386_Q	391_D	1.744	1.00
130_G	150_K	1.734	1.00
319_K	349_Q	1.726	1.00
127_A	151_R	1.725	1.00
328_G	342_D	1.722	1.00
315_R	351_E	1.718	1.00
300_A	341_I	1.707	1.00
271_Q	349_Q	1.704	1.00
184_S	264_R	1.685	1.00
281_I	327_P	1.658	1.00
323_S	345_E	1.646	1.00
357_T	403_F	1.620	1.00
153_N	175_D	1.616	1.00
367_K	396_E	1.615	1.00
189_T	398_R	1.613	1.00
267_A	308_P	1.612	1.00
283_Y	339_L	1.597	1.00
352_V	406_P	1.570	1.00
316_I	408_L	1.559	1.00
21_P	68_K	1.554	1.00
168_E	172_A	1.546	1.00
160_N	163_A	1.525	1.00
197_E	249_S	1.524	1.00
377_L	380_D	1.514	1.00
314_G	354_S	1.508	1.00
280_E	343_K	1.507	1.00
319_K	347_E	1.507	1.00
284_Q	336_G	1.506	1.00
141_S	144_G	1.474	1.00
41_A	48_L	1.467	1.00
159_D	164_L	1.466	1.00
183_L	306_V	1.461	1.00
287_S	292_A	1.457	1.00
185_A	404_I	1.448	1.00
283_Y	297_F	1.445	1.00
282_P	295_V	1.444	1.00
378_L	381_I	1.443	1.00
32_P	35_Q	1.442	1.00
136_G	155_L	1.427	1.00
276_K	345_E	1.423	1.00
327_P	339_L	1.417	1.00
36_V	58_V	1.414	1.00
72_Q	82_T	1.409	1.00
179_G	310_V	1.398	1.00
33_V	74_V	1.395	1.00
374_S	389_R	1.395	1.00
270_L	309_T	1.388	1.00
128_D	131_E	1.379	1.00
344_Q	365_T	1.365	0.99
183_L	318_L	1.357	0.99
263_P	362_G	1.353	0.99
163_A	166_A	1.350	0.99
269_H	309_T	1.346	0.99
350_V	358_L	1.344	0.99
329_Q	340_A	1.342	0.99
379_G	389_R	1.339	0.99
277_Q	344_Q	1.336	0.99
326_V	342_D	1.331	0.99
84_Q	89_L	1.325	0.99
157_L	164_L	1.324	0.99
75_V	82_T	1.320	0.99
28_V	36_V	1.293	0.99
182_E	409_V	1.291	0.99
380_D	389_R	1.290	0.99
368_N	395_D	1.284	0.99
374_S	377_L	1.283	0.99
75_V	91_V	1.282	0.99
251_L	257_L	1.270	0.99
280_E	341_I	1.269	0.99
198_L	250_A	1.264	0.99
165_S	168_E	1.256	0.99
279_S	342_D	1.244	0.99
318_L	352_V	1.244	0.99
136_G	167_L	1.244	0.99
118_E	164_L	1.242	0.99
301_V	325_N	1.240	0.99
284_Q	295_V	1.240	0.99
99_N	103_R	1.239	0.99
25_T	63_T	1.221	0.99
120_R	124_L	1.213	0.99
52_P	78_A	1.207	0.99
106_A	109_A	1.206	0.99
268_S	317_R	1.202	0.99
267_A	273_A	1.197	0.99
287_S	294_S	1.193	0.99
27_M	61_H	1.186	0.99
274_S	305_E	1.186	0.99
359_A	403_F	1.178	0.98
199_G	202_W	1.175	0.98
46_L	84_Q	1.170	0.98
249_S	390_H	1.168	0.98
235_N	239_I	1.165	0.98
274_S	347_E	1.145	0.98
385_G	388_F	1.141	0.98
216_V	219_L	1.133	0.98
80_L	91_V	1.127	0.98
276_K	301_V	1.122	0.98
335_D	338_V	1.119	0.98
213_V	216_V	1.107	0.98
232_V	238_R	1.106	0.98
83_R	92_H	1.104	0.98
28_V	31_V	1.103	0.98
106_A	110_R	1.103	0.98
364_F	397_R	1.097	0.98
146_M	157_L	1.096	0.98
258_D	397_R	1.094	0.98
266_L	409_V	1.093	0.97
200_V	248_L	1.088	0.97
26_L	31_V	1.084	0.97
263_P	273_A	1.082	0.97
116_P	119_N	1.079	0.97
279_S	328_G	1.074	0.97
383_W	386_Q	1.074	0.97
334_A	337_E	1.073	0.97
327_P	340_A	1.072	0.97
32_P	57_T	1.071	0.97
285_V	295_V	1.071	0.97
354_S	407_R	1.069	0.97
169_Q	173_Q	1.069	0.97
169_Q	172_A	1.061	0.97
298_K	301_V	1.061	0.97
201_K	247_E	1.052	0.97
159_D	167_L	1.044	0.97
354_S	408_L	1.043	0.97
127_A	132_L	1.043	0.97
282_P	340_A	1.038	0.97
265_L	360_L	1.036	0.97
34_A	38_Q	1.035	0.97
331_L	337_E	1.027	0.96
37_L	48_L	1.027	0.96
82_T	89_L	1.023	0.96
190_I	401_V	1.016	0.96
279_S	340_A	1.010	0.96
266_L	350_V	1.007	0.96
287_S	293_T	1.007	0.96
323_S	343_K	1.006	0.96
26_L	70_A	1.006	0.96
252_E	380_D	1.006	0.96
295_V	338_V	1.002	0.96
46_L	89_L	0.991	0.96
275_I	361_G	0.979	0.95
233_G	237_G	0.977	0.95
62_L	69_Q	0.973	0.95
305_E	321_H	0.971	0.95
192_E	399_E	0.964	0.95
185_A	304_M	0.963	0.95
379_G	387_L	0.952	0.94
60_L	70_A	0.948	0.94
73_T	88_I	0.945	0.94
188_V	248_L	0.944	0.94
279_S	327_P	0.943	0.94
201_K	249_S	0.941	0.94
290_S	293_T	0.940	0.94
44_E	48_L	0.939	0.94
33_V	78_A	0.936	0.94
282_P	298_K	0.930	0.94
204_L	250_A	0.929	0.94
134_K	137_E	0.929	0.94
109_A	113_A	0.924	0.94
301_V	324_Q	0.918	0.93
122_I	171_V	0.918	0.93
180_Q	322_I	0.917	0.93
299_E	343_K	0.917	0.93
191_N	396_E	0.914	0.93
124_L	148_V	0.913	0.93
101_I	105_E	0.912	0.93
286_S	294_S	0.911	0.93
267_A	306_V	0.910	0.93
209_H	213_V	0.909	0.93
192_E	364_F	0.905	0.93
284_Q	338_V	0.896	0.92
222_D	225_V	0.895	0.92
189_T	324_Q	0.894	0.92
115_L	160_N	0.893	0.92
50_V	91_V	0.888	0.92
58_V	78_A	0.882	0.92
267_A	302_L	0.881	0.92
279_S	341_I	0.880	0.92
232_V	235_N	0.872	0.91
189_T	360_L	0.871	0.91
265_L	273_A	0.871	0.91
75_V	80_L	0.868	0.91
376_P	388_F	0.867	0.91
317_R	351_E	0.865	0.91
370_S	391_D	0.862	0.91
103_R	106_A	0.859	0.91
302_L	363_I	0.859	0.91
326_V	367_K	0.857	0.91
286_S	290_S	0.857	0.91
364_F	399_E	0.856	0.91
300_A	327_P	0.855	0.91
188_V	257_L	0.855	0.91
191_N	398_R	0.853	0.90
47_N	88_I	0.846	0.90
278_G	297_F	0.846	0.90
399_E	406_P	0.843	0.90
107_E	111_A	0.837	0.90
372_Q	391_D	0.836	0.90
365_T	398_R	0.835	0.90
322_I	346_I	0.834	0.89
317_R	349_Q	0.831	0.89
328_G	340_A	0.830	0.89
42_E	61_H	0.830	0.89
102_A	106_A	0.828	0.89
346_I	360_L	0.827	0.89
330_V	340_A	0.825	0.89
311_L	317_R	0.823	0.89
261_A	277_Q	0.820	0.89
381_I	389_R	0.820	0.89
164_L	168_E	0.819	0.89
195_L	394_E	0.819	0.89
23_K	64_D	0.816	0.88
130_G	134_K	0.814	0.88
166_A	169_Q	0.814	0.88
37_L	399_E	0.811	0.88
278_G	282_P	0.809	0.88
178_V	351_E	0.801	0.87
184_S	399_E	0.801	0.87
375_V	389_R	0.800	0.87
48_L	89_L	0.800	0.87
68_K	84_Q	0.799	0.87
99_N	102_A	0.797	0.87
33_V	37_L	0.796	0.87
231_H	238_R	0.794	0.87
274_S	321_H	0.793	0.87
182_E	407_R	0.792	0.87
324_Q	365_T	0.791	0.87
302_L	324_Q	0.786	0.87
344_Q	400_L	0.784	0.86
277_Q	324_Q	0.781	0.86
285_V	294_S	0.780	0.86
192_E	397_R	0.780	0.86
302_L	346_I	0.778	0.86
117_L	120_R	0.778	0.86
129_A	133_A	0.774	0.86
84_Q	155_L	0.774	0.86
25_T	66_P	0.774	0.86
306_V	318_L	0.772	0.86
298_K	341_I	0.771	0.85
187_I	302_L	0.769	0.85
126_Y	175_D	0.769	0.85
188_V	401_V	0.767	0.85
215_Q	219_L	0.767	0.85
208_Q	241_G	0.764	0.85
284_Q	296_E	0.763	0.85
32_P	36_V	0.762	0.85
211_G	219_L	0.758	0.84
307_T	319_K	0.757	0.84
199_G	339_L	0.751	0.84
330_V	337_E	0.749	0.84
322_I	363_I	0.748	0.84
276_K	323_S	0.746	0.84
189_T	258_D	0.744	0.83
156_L	170_W	0.743	0.83
381_I	388_F	0.743	0.83
223_L	226_A	0.742	0.83
155_L	167_L	0.740	0.83
196_R	393_K	0.738	0.83
283_Y	296_E	0.736	0.83
39_A	42_E	0.736	0.83
133_A	148_V	0.736	0.83
275_I	359_A	0.736	0.83
109_A	112_Q	0.730	0.82
263_P	399_E	0.730	0.82
149_D	152_T	0.729	0.82
278_G	303_G	0.728	0.82
281_I	339_L	0.727	0.82
277_Q	325_N	0.727	0.82
81_I	94_I	0.726	0.82
118_E	121_S	0.726	0.82
183_L	270_L	0.725	0.82
368_N	393_K	0.724	0.82
130_G	133_A	0.724	0.82
136_G	171_V	0.722	0.81
191_N	256_Q	0.713	0.81
371_G	392_G	0.712	0.81
230_T	233_G	0.711	0.80
35_Q	38_Q	0.711	0.80
124_L	129_A	0.710	0.80
378_L	388_F	0.710	0.80
102_A	110_R	0.707	0.80
233_G	238_R	0.706	0.80
118_E	122_I	0.706	0.80
139_L	163_A	0.705	0.80
297_F	325_N	0.705	0.80
132_L	171_V	0.703	0.80
186_H	262_S	0.700	0.79
129_A	175_D	0.699	0.79
348_T	407_R	0.698	0.79
24_V	43_Q	0.696	0.79
58_V	74_V	0.696	0.79
267_A	316_I	0.694	0.79
26_L	40_L	0.692	0.79
77_S	91_V	0.685	0.78
51_S	54_V	0.685	0.78
124_L	153_N	0.685	0.78
263_P	361_G	0.684	0.78
180_Q	310_V	0.683	0.78
291_G	294_S	0.682	0.78
375_V	385_G	0.681	0.78
181_V	267_A	0.680	0.77
258_D	368_N	0.676	0.77
329_Q	337_E	0.676	0.77
348_T	360_L	0.676	0.77
119_N	122_I	0.676	0.77
261_A	365_T	0.674	0.77
382_P	388_F	0.674	0.77
66_P	70_A	0.671	0.77
58_V	320_L	0.670	0.76
71_L	82_T	0.669	0.76
38_Q	74_V	0.666	0.76
108_Q	113_A	0.663	0.76
99_N	105_E	0.662	0.76
226_A	230_T	0.660	0.75
89_L	250_A	0.658	0.75
120_R	164_L	0.658	0.75
306_V	404_I	0.654	0.75
127_A	149_D	0.654	0.75
180_Q	402_V	0.653	0.75
110_R	116_P	0.653	0.75
91_V	100_N	0.653	0.75
101_I	104_Q	0.650	0.74
158_R	163_A	0.650	0.74
284_Q	339_L	0.649	0.74
108_Q	111_A	0.648	0.74
48_L	91_V	0.648	0.74
318_L	340_A	0.647	0.74
228_A	231_H	0.646	0.74
67_W	70_A	0.646	0.74
127_A	174_M	0.646	0.74
277_Q	322_I	0.644	0.74
123_T	154_R	0.644	0.74
232_V	239_I	0.644	0.74
29_D	59_S	0.643	0.73
281_I	341_I	0.643	0.73
135_A	167_L	0.641	0.73
282_P	338_V	0.640	0.73
263_P	348_T	0.640	0.73
120_R	127_A	0.639	0.73
117_L	125_Q	0.638	0.73
302_L	322_I	0.638	0.73
231_H	236_I	0.637	0.73
297_F	339_L	0.636	0.73
37_L	52_P	0.636	0.73
89_L	133_A	0.634	0.72
139_L	316_I	0.634	0.72
331_L	375_V	0.634	0.72
107_E	112_Q	0.634	0.72
71_L	75_V	0.631	0.72
180_Q	186_H	0.630	0.72
200_V	321_H	0.626	0.71
282_P	300_A	0.626	0.71
28_V	71_L	0.626	0.71
182_E	264_R	0.624	0.71
182_E	266_L	0.624	0.71
62_L	184_S	0.624	0.71
380_D	385_G	0.623	0.71
233_G	240_N	0.623	0.71
122_I	164_L	0.622	0.71
53_D	96_W	0.621	0.71
129_A	148_V	0.620	0.71
284_Q	294_S	0.619	0.71
184_S	405_T	0.619	0.71
187_I	402_V	0.618	0.71
286_S	292_A	0.616	0.70
278_G	400_L	0.615	0.70
121_S	154_R	0.614	0.70
211_G	214_G	0.613	0.70
386_Q	393_K	0.613	0.70
208_Q	231_H	0.613	0.70
40_L	70_A	0.611	0.70
251_L	267_A	0.611	0.70
47_N	87_N	0.610	0.70
279_S	300_A	0.610	0.70
231_H	237_G	0.609	0.69
178_V	269_H	0.608	0.69
281_I	298_K	0.608	0.69
156_L	174_M	0.607	0.69
39_A	70_A	0.607	0.69
51_S	93_S	0.606	0.69
235_N	238_R	0.606	0.69
369_K	392_G	0.604	0.69
29_D	38_Q	0.603	0.69
56_G	80_L	0.602	0.69
195_L	401_V	0.602	0.69
285_V	339_L	0.602	0.69
344_Q	363_I	0.601	0.68
300_A	338_V	0.601	0.68
142_A	172_A	0.601	0.68
124_L	175_D	0.600	0.68
28_V	39_A	0.600	0.68
186_H	405_T	0.599	0.68
140_L	159_D	0.598	0.68
159_D	270_L	0.598	0.68
222_D	226_A	0.597	0.68
273_A	306_V	0.597	0.68
297_F	341_I	0.597	0.68
211_G	218_T	0.596	0.68
205_A	242_R	0.595	0.68
308_P	318_L	0.594	0.67
47_N	62_L	0.594	0.67
180_Q	266_L	0.594	0.67
190_I	194_S	0.592	0.67
43_Q	48_L	0.592	0.67
37_L	50_V	0.590	0.67
302_L	360_L	0.589	0.67
178_V	271_Q	0.589	0.67
261_A	348_T	0.587	0.67
276_K	303_G	0.587	0.67
159_D	405_T	0.587	0.67
159_D	357_T	0.584	0.66
379_G	382_P	0.584	0.66
116_P	120_R	0.584	0.66
98_N	108_Q	0.583	0.66
79_G	94_I	0.583	0.66
128_D	132_L	0.583	0.66
169_Q	394_E	0.583	0.66
121_S	156_L	0.582	0.66
303_G	346_I	0.581	0.66
49_V	73_T	0.579	0.66
191_N	237_G	0.579	0.66
211_G	215_Q	0.578	0.65
22_Q	31_V	0.578	0.65
58_V	91_V	0.578	0.65
224_S	228_A	0.577	0.65
32_P	56_G	0.576	0.65
259_I	263_P	0.575	0.65
119_N	402_V	0.574	0.65
214_G	217_T	0.574	0.65
47_N	65_V	0.573	0.65
327_P	341_I	0.572	0.65
325_N	345_E	0.571	0.64
58_V	234_F	0.570	0.64
223_L	227_T	0.569	0.64
194_S	257_L	0.568	0.64
162_T	165_S	0.568	0.64
285_V	290_S	0.566	0.64
72_Q	157_L	0.566	0.64
96_W	158_R	0.564	0.64
283_Y	323_S	0.563	0.63
53_D	394_E	0.562	0.63
218_T	383_W	0.560	0.63
265_L	274_S	0.558	0.63
287_S	295_V	0.558	0.63
71_L	91_V	0.558	0.63
276_K	280_E	0.557	0.63
248_L	259_I	0.557	0.63
352_V	356_E	0.557	0.63
132_L	174_M	0.556	0.62
122_I	175_D	0.554	0.62
382_P	387_L	0.551	0.62
199_G	249_S	0.551	0.62
201_K	373_D	0.550	0.62
24_V	66_P	0.550	0.62
98_N	103_R	0.549	0.61
115_L	162_T	0.549	0.61
93_S	157_L	0.549	0.61
379_G	388_F	0.548	0.61
261_A	401_V	0.548	0.61
324_Q	364_F	0.547	0.61
368_N	391_D	0.547	0.61
330_V	339_L	0.546	0.61
211_G	217_T	0.544	0.61
75_V	78_A	0.543	0.61
179_G	269_H	0.543	0.61
218_T	227_T	0.542	0.60
222_D	228_A	0.541	0.60
53_D	112_Q	0.540	0.60
65_V	69_Q	0.540	0.60
327_P	330_V	0.538	0.60
172_A	210_A	0.537	0.60
83_R	90_S	0.536	0.60
200_V	243_L	0.536	0.60
255_Q	371_G	0.534	0.59
227_T	360_L	0.533	0.59
94_I	98_N	0.531	0.59
42_E	188_V	0.530	0.59
50_V	59_S	0.529	0.59
179_G	312_Q	0.529	0.59
200_V	246_L	0.528	0.58
119_N	158_R	0.528	0.58
346_I	361_G	0.526	0.58
41_A	46_L	0.524	0.58
139_L	170_W	0.524	0.58
124_L	127_A	0.523	0.58
122_I	168_E	0.523	0.58
140_L	163_A	0.522	0.58
92_H	97_Q	0.521	0.57
271_Q	319_K	0.520	0.57
336_G	339_L	0.520	0.57
281_I	297_F	0.520	0.57
169_Q	371_G	0.518	0.57
324_Q	344_Q	0.518	0.57
373_D	390_H	0.518	0.57
130_G	313_K	0.518	0.57
183_L	275_I	0.517	0.57
150_K	271_Q	0.517	0.57
231_H	235_N	0.517	0.57
248_L	273_A	0.516	0.57
72_Q	95_A	0.513	0.56
328_G	331_L	0.513	0.56
259_I	367_K	0.513	0.56
212_G	217_T	0.513	0.56
98_N	101_I	0.513	0.56
65_V	84_Q	0.511	0.56
24_V	70_A	0.511	0.56
262_S	277_Q	0.511	0.56
146_M	270_L	0.509	0.56
72_Q	139_L	0.507	0.55
261_A	344_Q	0.507	0.55
367_K	409_V	0.507	0.55
117_L	158_R	0.506	0.55
236_I	239_I	0.506	0.55
329_Q	335_D	0.506	0.55
106_A	111_A	0.506	0.55
234_F	389_R	0.505	0.55
184_S	262_S	0.504	0.55
210_A	215_Q	0.503	0.55
36_V	330_V	0.502	0.55
117_L	121_S	0.502	0.55
378_L	384_F	0.502	0.55
225_V	228_A	0.502	0.55
384_F	388_F	0.501	0.55
212_G	215_Q	0.501	0.55
187_I	336_G	0.501	0.55
183_L	273_A	0.500	0.54

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4av2A	3	0.4175	100	0.184	Contact Map
2y3mA	2	0.3301	99.9	0.725	Contact Map
3gr5A	2	0.3641	99.9	0.734	Contact Map
3ossD	1	0.335	99.9	0.735	Contact Map
4e9jA	2	0.517	99.9	0.747	Contact Map
3ezjA	3	0.4684	99.8	0.759	Contact Map
4g08A	1	0.3325	99.8	0.763	Contact Map
4jtmA	2	0.1845	99.1	0.854	Contact Map
4ar0A	1	0.2864	99.1	0.854	Contact Map
4m0nA	1	0.2257	97.3	0.91	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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