GREMLIN Database
NUOCD - NADH-quinone oxidoreductase subunit C/D
UniProt: P33599 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12084
Length: 596 (507)
Sequences: 621 (360)
Seq/√Len: 16.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
456_V461_T5.8401.00
384_P478_E5.5361.00
453_G468_E5.2571.00
431_D436_K4.0861.00
420_T567_Q3.8301.00
272_E590_V3.6371.00
302_I364_V3.5230.99
167_K257_E3.4790.99
449_E472_Q3.3460.99
410_Y420_T3.3060.99
448_F479_Q3.2010.99
408_A583_Y3.0860.99
54_L125_K3.0160.98
120_V145_F2.9100.98
119_H146_D2.8420.98
254_K257_E2.8030.97
148_H151_L2.7120.97
448_F476_I2.6970.97
388_A471_R2.6900.97
89_A92_F2.6460.96
431_D450_I2.6400.96
552_S555_T2.5590.95
381_D478_E2.4060.94
468_E472_Q2.4040.93
571_A587_I2.3820.93
374_R378_E2.3520.93
411_G414_E2.3510.93
348_A375_L2.3130.92
296_P299_V2.2670.91
272_E593_D2.2560.91
304_V446_F2.2170.90
50_R117_D2.2030.90
256_G555_T2.1980.90
321_T325_D2.1950.90
74_H95_F2.1710.89
298_R367_D2.1670.89
295_V300_N2.1640.89
227_F565_L2.1360.89
58_D62_K2.1300.88
46_V109_L2.1220.88
285_L441_S2.1160.88
290_L529_S2.1030.88
115_E118_L2.0950.88
138_W151_L2.0450.86
309_L342_I2.0250.86
275_G593_D2.0130.85
274_L593_D1.9410.83
274_L590_V1.9400.83
298_R485_P1.9320.83
222_S318_Y1.9290.83
305_M480_C1.9150.82
229_I241_C1.8980.82
297_D445_N1.8760.81
297_D300_N1.8670.80
222_S591_M1.8500.80
53_L342_I1.8490.80
590_V593_D1.8340.79
380_L478_E1.8270.79
379_F383_M1.8210.79
528_E543_Y1.8190.79
304_V442_G1.8160.79
431_D437_A1.7980.78
575_S583_Y1.7970.78
281_M307_S1.7890.77
401_K405_Q1.7790.77
274_L588_D1.7750.77
67_Y344_D1.7500.76
325_D588_D1.7370.75
94_V120_V1.7340.75
449_E475_R1.7280.75
294_T300_N1.7260.75
472_Q475_R1.7150.74
79_R92_F1.7090.74
272_E588_D1.7050.74
229_I591_M1.7030.74
150_N242_V1.7020.74
275_G278_V1.7000.74
167_K254_K1.6790.73
567_Q571_A1.6610.72
342_I585_G1.6270.70
58_D126_L1.6080.69
213_F585_G1.6050.69
221_P224_H1.6040.69
122_T134_E1.5860.68
325_D590_V1.5860.68
400_L404_S1.5790.68
420_T424_G1.5680.67
302_I368_L1.5670.67
352_F389_S1.5660.67
227_F318_Y1.5620.67
75_G141_F1.5620.67
436_K450_I1.5620.67
140_L302_I1.5530.67
151_L290_L1.5450.66
448_F451_P1.5350.66
295_V491_A1.5330.66
94_V141_F1.5230.65
41_T45_V1.5200.65
250_R276_G1.5100.64
96_Y238_I1.5100.64
274_L559_T1.5100.64
171_A255_M1.5090.64
229_I537_K1.5070.64
296_P491_A1.4980.64
264_Y283_Y1.4980.64
446_F482_N1.4930.63
306_L358_W1.4660.62
289_K531_Q1.4620.62
154_I350_T1.4620.62
304_V441_S1.4560.61
53_L102_D1.4540.61
250_R592_S1.4530.61
318_Y591_M1.4490.61
454_G457_S1.4450.61
272_E325_D1.4380.60
451_P468_E1.4380.60
53_L57_G1.4180.59
345_L359_F1.4170.59
100_S103_R1.4110.59
310_F356_P1.4080.59
229_I580_L1.4080.59
401_K460_Y1.4030.58
301_V485_P1.3990.58
250_R272_E1.3940.58
314_S535_A1.3910.58
227_F591_M1.3820.57
453_G456_V1.3640.56
272_E537_K1.3600.56
338_D382_W1.3580.56
273_Y310_F1.3550.56
321_T588_D1.3460.55
92_F109_L1.3420.55
559_T588_D1.3360.55
231_L585_G1.3340.55
53_L121_P1.3180.54
231_L241_C1.3130.53
436_K448_F1.3130.53
94_V560_P1.3050.53
318_Y588_D1.3050.53
412_A428_T1.3020.53
391_E471_R1.2980.52
559_T590_V1.2970.52
278_V536_T1.2950.52
273_Y590_V1.2860.52
224_H325_D1.2820.52
321_T590_V1.2730.51
225_G273_Y1.2720.51
588_D593_D1.2700.51
151_L154_I1.2690.51
122_T436_K1.2660.51
275_G325_D1.2660.51
141_F165_L1.2530.50
273_Y591_M1.2440.49
140_L430_I1.2430.49
109_L577_V1.2350.49
274_L536_T1.2340.49
272_E275_G1.2290.48
216_L581_I1.2260.48
59_F62_K1.2240.48
299_V586_S1.2240.48
434_V530_F1.2220.48
405_Q460_Y1.2190.48
44_P56_V1.2170.48
120_V143_I1.2160.48
412_A430_I1.2110.47
364_V383_M1.2110.47
48_I102_D1.2110.47
530_F539_I1.2090.47
165_L443_Y1.2010.47
272_E559_T1.2000.47
94_V109_L1.2000.47
377_R482_N1.1980.47
391_E467_V1.1980.47
124_T578_S1.1920.46
280_E359_F1.1920.46
238_I572_I1.1900.46
532_M539_I1.1840.46
379_F474_L1.1830.46
224_H585_G1.1830.46
219_N223_A1.1810.46
147_G478_E1.1800.46
225_G310_F1.1790.46
275_G590_V1.1790.46
324_Q588_D1.1780.45
464_M530_F1.1710.45
211_F232_Q1.1680.45
114_A117_D1.1660.45
437_A450_I1.1610.45
264_Y555_T1.1600.44
219_N591_M1.1530.44
156_M588_D1.1520.44
320_S466_K1.1510.44
464_M468_E1.1500.44
256_G264_Y1.1480.44
138_W145_F1.1370.43
190_M194_T1.1370.43
295_V481_L1.1320.43
227_F241_C1.1230.42
213_F242_V1.1130.42
431_D452_V1.1130.42
261_W546_S1.1050.41
525_P553_Y1.1040.41
109_L394_A1.1040.41
565_L594_V1.1040.41
415_A425_L1.0980.41
565_L591_M1.0960.41
170_P173_A1.0910.41
410_Y428_T1.0900.40
446_F480_C1.0870.40
356_P542_Y1.0830.40
453_G461_T1.0830.40
131_N148_H1.0790.40
561_S593_D1.0780.40
46_V63_L1.0750.40
383_M557_V1.0740.40
155_M215_N1.0740.40
484_M487_G1.0720.39
307_S440_Y1.0710.39
315_H469_E1.0710.39
345_L379_F1.0670.39
59_F73_L1.0650.39
589_F592_S1.0620.39
274_L594_V1.0580.39
132_W154_I1.0540.38
136_E556_R1.0530.38
219_N222_S1.0520.38
310_F591_M1.0520.38
248_H424_G1.0430.38
420_T423_A1.0400.38
260_S263_S1.0390.38
395_L460_Y1.0330.37
322_F559_T1.0330.37
216_L222_S1.0300.37
398_T533_I1.0270.37
248_H339_R1.0270.37
123_F525_P1.0250.37
470_L477_L1.0230.37
457_S571_A1.0200.37
127_F246_G1.0160.36
259_Q267_Y1.0150.36
193_L196_K1.0130.36
40_R49_K1.0120.36
313_N343_Y1.0120.36
275_G313_N1.0100.36
275_G588_D1.0080.36
271_I557_V1.0060.36
223_A408_A1.0040.36
297_D388_A1.0030.36
539_I558_R1.0030.36
219_N565_L1.0020.36
542_Y557_V0.9950.35
271_I542_Y0.9940.35
327_G405_Q0.9880.35
370_R481_L0.9880.35
265_I276_G0.9870.35
196_K300_N0.9870.35
309_L345_L0.9870.35
321_T354_M0.9860.35
52_Q55_E0.9850.35
206_T210_D0.9850.35
317_L588_D0.9840.35
224_H595_D0.9830.35
294_T475_R0.9820.35
107_I130_A0.9790.34
446_F450_I0.9750.34
246_G357_A0.9750.34
102_D374_R0.9750.34
470_L482_N0.9720.34
488_P495_L0.9710.34
413_K486_E0.9680.34
220_H595_D0.9660.34
536_T559_T0.9650.34
224_H584_L0.9650.34
226_A537_K0.9640.34
436_K440_Y0.9610.34
141_F167_K0.9600.33
49_K147_G0.9590.33
559_T593_D0.9580.33
219_N590_V0.9560.33
125_K392_K0.9550.33
139_D163_H0.9540.33
271_I592_S0.9510.33
275_G321_T0.9510.33
475_R478_E0.9480.33
224_H321_T0.9470.33
294_T378_E0.9470.33
298_R448_F0.9460.33
406_G578_S0.9450.33
152_R326_V0.9440.33
249_H466_K0.9400.32
216_L231_L0.9390.32
151_L544_L0.9390.32
301_V445_N0.9380.32
407_V576_L0.9350.32
166_R327_G0.9330.32
166_R283_Y0.9320.32
340_Q466_K0.9300.32
157_P588_D0.9290.32
219_N589_F0.9290.32
269_D357_A0.9290.32
216_L585_G0.9270.32
221_P565_L0.9260.32
320_S335_A0.9240.32
337_T559_T0.9180.31
141_F166_R0.9170.31
48_I51_E0.9150.31
246_G325_D0.9130.31
67_Y342_I0.9130.31
163_H450_I0.9100.31
57_G123_F0.9090.31
339_R354_M0.9080.31
321_T593_D0.9060.31
383_M449_E0.9060.31
89_A93_S0.9060.31
340_Q343_Y0.9050.31
226_A591_M0.9040.31
325_D354_M0.9030.31
352_F355_H0.9030.31
320_S339_R0.9030.31
413_K483_N0.9010.30
571_A589_F0.9010.30
213_F537_K0.8990.30
340_Q532_M0.8970.30
223_A227_F0.8970.30
226_A459_C0.8970.30
318_Y582_V0.8940.30
383_M470_L0.8940.30
59_F66_P0.8930.30
530_F541_S0.8930.30
79_R168_D0.8930.30
223_A226_A0.8910.30
55_E58_D0.8900.30
314_S588_D0.8850.30
139_D318_Y0.8840.30
213_F584_L0.8830.30
476_I480_C0.8810.30
117_D143_I0.8790.29
535_A559_T0.8770.29
168_D577_V0.8760.29
439_P487_G0.8740.29
231_L584_L0.8730.29
153_R460_Y0.8720.29
117_D294_T0.8700.29
287_V327_G0.8700.29
544_L555_T0.8700.29
96_Y534_E0.8670.29
49_K55_E0.8660.29
41_T46_V0.8560.28
140_L156_M0.8550.28
305_M449_E0.8500.28
298_R487_G0.8490.28
156_M482_N0.8490.28
49_K52_Q0.8470.28
222_S282_P0.8470.28
314_S587_I0.8460.28
350_T356_P0.8440.28
535_A540_N0.8430.28
137_T143_I0.8430.28
244_D310_F0.8430.28
593_D596_R0.8410.28
434_V532_M0.8400.28
330_T407_V0.8400.28
247_Y350_T0.8360.27
267_Y400_L0.8360.27
447_D479_Q0.8350.27
138_W223_A0.8340.27
284_V292_G0.8330.27
219_N581_I0.8320.27
319_I408_A0.8320.27
63_L66_P0.8290.27
241_C572_I0.8270.27
484_M557_V0.8270.27
221_P314_S0.8250.27
290_L360_R0.8240.27
572_I583_Y0.8230.27
219_N227_F0.8210.27
118_L168_D0.8200.27
390_Y394_A0.8190.27
324_Q593_D0.8190.27
109_L271_I0.8170.27
132_W562_F0.8160.26
225_G280_E0.8160.26
412_A457_S0.8150.26
272_E594_V0.8140.26
221_P584_L0.8100.26
589_F593_D0.8100.26
222_S589_F0.8060.26
565_L581_I0.8050.26
223_A591_M0.8050.26
277_C457_S0.8040.26
50_R55_E0.8040.26
226_A572_I0.8020.26
152_R230_V0.8010.26
124_T556_R0.7990.26
247_Y396_Q0.7990.26
248_H589_F0.7980.26
147_G341_K0.7980.26
290_L546_S0.7910.25
304_V480_C0.7910.25
305_M477_L0.7900.25
117_D388_A0.7880.25
107_I586_S0.7880.25
59_F67_Y0.7850.25
281_M592_S0.7810.25
230_V585_G0.7800.25
325_D593_D0.7800.25
246_G358_W0.7780.25
106_D438_R0.7780.25
134_E558_R0.7780.25
167_K525_P0.7770.25
117_D141_F0.7770.25
107_I378_E0.7760.25
389_S392_K0.7760.25
148_H279_N0.7740.25
324_Q559_T0.7720.25
286_A544_L0.7710.25
434_V574_G0.7710.25
248_H273_Y0.7700.24
250_R348_A0.7670.24
472_Q577_V0.7650.24
399_I548_G0.7650.24
346_V355_H0.7640.24
367_D485_P0.7640.24
318_Y321_T0.7630.24
95_F169_Y0.7620.24
274_L596_R0.7610.24
61_K67_Y0.7610.24
126_L454_G0.7610.24
463_V467_V0.7590.24
120_V339_R0.7570.24
224_H318_Y0.7570.24
169_Y176_F0.7570.24
125_K491_A0.7570.24
226_A241_C0.7560.24
126_L413_K0.7560.24
276_G354_M0.7550.24
269_D442_G0.7550.24
224_H227_F0.7540.24
119_H144_T0.7540.24
136_E350_T0.7530.24
394_A463_V0.7490.24
222_S561_S0.7490.24
75_G143_I0.7460.23
419_G434_V0.7450.23
328_A394_A0.7430.23
46_V55_E0.7390.23
445_N483_N0.7390.23
296_P535_A0.7340.23
157_P355_H0.7330.23
246_G339_R0.7330.23
318_Y580_L0.7310.23
215_N273_Y0.7300.23
273_Y581_I0.7270.23
133_Y356_P0.7270.23
122_T125_K0.7240.23
305_M481_L0.7230.23
307_S459_C0.7220.22
70_L73_L0.7210.22
383_M488_P0.7190.22
256_G544_L0.7160.22
139_D466_K0.7150.22
136_E250_R0.7150.22
42_G352_F0.7130.22
226_A408_A0.7130.22
124_T143_I0.7130.22
374_R385_K0.7130.22
440_Y558_R0.7120.22
222_S231_L0.7100.22
39_T42_G0.7080.22
191_E238_I0.7080.22
346_V350_T0.7070.22
537_K589_F0.7060.22
267_Y404_S0.7050.22
377_R481_L0.7050.22
222_S565_L0.7050.22
354_M559_T0.7040.22
117_D287_V0.7040.22
539_I592_S0.7020.22
44_P48_I0.7020.22
568_I591_M0.6980.22
291_A524_M0.6950.21
307_S592_S0.6940.21
216_L580_L0.6930.21
192_A195_F0.6920.21
118_L166_R0.6920.21
245_I310_F0.6910.21
302_I448_F0.6900.21
301_V483_N0.6900.21
293_I368_L0.6900.21
275_G559_T0.6890.21
55_E62_K0.6870.21
113_L117_D0.6860.21
62_K417_E0.6860.21
404_S453_G0.6850.21
77_D167_K0.6840.21
231_L406_G0.6820.21
222_S584_L0.6820.21
45_V48_I0.6810.21
151_L592_S0.6810.21
545_T553_Y0.6800.21
373_D377_R0.6800.21
380_L384_P0.6800.21
41_T44_P0.6790.21
144_T207_E0.6780.21
190_M461_T0.6760.21
243_P324_Q0.6760.21
157_P584_L0.6760.21
313_N317_L0.6760.21
274_L325_D0.6750.21
140_L307_S0.6740.21
548_G553_Y0.6740.21
317_L332_V0.6740.21
76_M545_T0.6740.21
268_T334_F0.6730.21
231_L318_Y0.6720.21
378_E486_E0.6710.20
314_S540_N0.6700.20
134_E149_P0.6690.20
240_D305_M0.6680.20
136_E557_V0.6680.20
229_I243_P0.6660.20
221_P231_L0.6660.20
584_L591_M0.6650.20
383_M474_L0.6640.20
132_W246_G0.6640.20
540_N592_S0.6630.20
420_T430_I0.6630.20
51_E103_R0.6630.20
472_Q476_I0.6610.20
434_V539_I0.6600.20
323_I400_L0.6590.20
331_P425_L0.6570.20
493_H496_T0.6530.20
310_F593_D0.6520.20
241_C340_Q0.6520.20
164_P235_G0.6500.20
170_P556_R0.6500.20
284_V359_F0.6490.20
189_E194_T0.6480.20
57_G98_L0.6480.20
323_I490_K0.6470.20
318_Y584_L0.6450.20
76_M571_A0.6440.19
281_M306_L0.6430.19
61_K127_F0.6410.19
167_K553_Y0.6400.19
322_F427_A0.6380.19
136_E423_A0.6370.19
208_N322_F0.6370.19
409_A549_S0.6360.19
51_E59_F0.6360.19
129_N539_I0.6360.19
272_E320_S0.6340.19
207_E484_M0.6340.19
448_F472_Q0.6340.19
323_I345_L0.6330.19
160_W276_G0.6330.19
400_L446_F0.6330.19
55_E59_F0.6310.19
590_V594_V0.6290.19
221_P585_G0.6290.19
274_L321_T0.6290.19
248_H568_I0.6280.19
485_P489_F0.6270.19
262_H390_Y0.6240.19
321_T559_T0.6230.19
107_I392_K0.6220.19
62_K66_P0.6220.19
78_E160_W0.6220.19
392_K396_Q0.6210.19
226_A272_E0.6200.19
109_L297_D0.6200.19
250_R262_H0.6190.19
55_E482_N0.6180.19
241_C591_M0.6180.19
134_E440_Y0.6180.19
132_W357_A0.6170.19
169_Y406_G0.6160.18
235_G253_E0.6150.18
448_F452_V0.6140.18
576_L581_I0.6140.18
63_L124_T0.6110.18
296_P488_P0.6100.18
408_A571_A0.6090.18
244_D267_Y0.6080.18
226_A590_V0.6080.18
232_Q537_K0.6070.18
56_V59_F0.6050.18
526_A549_S0.6050.18
470_L527_N0.6030.18
222_S581_I0.6020.18
269_D356_P0.6010.18
225_G581_I0.6000.18
231_L354_M0.6000.18
360_R492_D0.5990.18
281_M557_V0.5990.18
205_G209_E0.5980.18
340_Q465_L0.5980.18
414_E570_A0.5980.18
228_R333_F0.5980.18
562_F590_V0.5980.18
51_E209_E0.5960.18
48_I294_T0.5960.18
75_G93_S0.5940.18
287_V364_V0.5930.18
444_E447_D0.5920.18
124_T131_N0.5920.18
154_I356_P0.5920.18
475_R479_Q0.5910.18
73_L295_V0.5910.18
340_Q408_A0.5910.18
273_Y589_F0.5900.18
228_R591_M0.5900.18
172_R175_E0.5890.18
120_V582_V0.5880.18
576_L584_L0.5880.18
306_L374_R0.5860.17
215_N225_G0.5850.17
444_E470_L0.5840.17
341_K383_M0.5820.17
77_D254_K0.5820.17
451_P484_M0.5810.17
73_L563_A0.5810.17
338_D390_Y0.5810.17
107_I381_D0.5800.17
107_I407_V0.5790.17
321_T535_A0.5770.17
276_G317_L0.5770.17
48_I478_E0.5760.17
163_H292_G0.5760.17
562_F584_L0.5760.17
482_N486_E0.5760.17
280_E527_N0.5760.17
230_V242_V0.5750.17
168_D254_K0.5740.17
313_N342_I0.5740.17
46_V60_L0.5730.17
164_P350_T0.5720.17
256_G556_R0.5710.17
290_L307_S0.5710.17
276_G356_P0.5710.17
260_S475_R0.5690.17
139_D165_L0.5690.17
233_L533_I0.5680.17
432_F437_A0.5670.17
325_D339_R0.5670.17
305_M438_R0.5670.17
324_Q390_Y0.5670.17
54_L111_V0.5660.17
341_K382_W0.5660.17
154_I562_F0.5650.17
219_N272_E0.5650.17
150_N230_V0.5640.17
321_T332_V0.5620.17
319_I387_L0.5620.17
224_H588_D0.5620.17
361_I476_I0.5620.17
235_G554_R0.5620.17
98_L147_G0.5620.17
50_R62_K0.5610.17
250_R397_N0.5610.17
584_L588_D0.5610.17
333_F593_D0.5600.17
42_G61_K0.5590.17
585_G588_D0.5580.17
227_F245_I0.5580.17
476_I546_S0.5560.16
62_K444_E0.5560.16
413_K482_N0.5560.16
178_P488_P0.5550.16
314_S364_V0.5540.16
243_P356_P0.5520.16
59_F63_L0.5510.16
544_L574_G0.5500.16
129_N141_F0.5490.16
345_L348_A0.5480.16
570_A575_S0.5470.16
384_P474_L0.5470.16
313_N350_T0.5470.16
165_L220_H0.5460.16
524_M550_T0.5460.16
120_V300_N0.5440.16
354_M548_G0.5440.16
120_V387_L0.5440.16
241_C580_L0.5440.16
340_Q527_N0.5400.16
361_I557_V0.5400.16
362_G458_D0.5400.16
216_L227_F0.5390.16
277_C356_P0.5380.16
381_D384_P0.5380.16
365_A368_L0.5380.16
135_R577_V0.5370.16
226_A580_L0.5370.16
260_S456_V0.5360.16
536_T589_F0.5360.16
581_I591_M0.5360.16
219_N339_R0.5360.16
396_Q578_S0.5360.16
537_K591_M0.5350.16
152_R158_Q0.5350.16
132_W148_H0.5340.16
537_K592_S0.5330.16
46_V114_A0.5330.16
113_L265_I0.5330.16
58_D63_L0.5320.16
319_I477_L0.5320.16
268_T273_Y0.5320.16
147_G413_K0.5320.16
248_H593_D0.5310.16
170_P222_S0.5310.16
415_A442_G0.5300.16
70_L209_E0.5300.16
134_E423_A0.5280.16
54_L121_P0.5270.16
54_L407_V0.5270.16
143_I409_A0.5260.16
251_G254_K0.5250.15
260_S297_D0.5250.15
166_R254_K0.5250.15
394_A408_A0.5220.15
560_P588_D0.5220.15
221_P590_V0.5210.15
561_S589_F0.5190.15
275_G536_T0.5180.15
216_L591_M0.5180.15
51_E204_R0.5170.15
74_H97_H0.5170.15
204_R208_N0.5160.15
226_A585_G0.5160.15
171_A238_I0.5160.15
90_A93_S0.5150.15
399_I577_V0.5140.15
102_D305_M0.5140.15
191_E194_T0.5120.15
227_F580_L0.5110.15
529_S576_L0.5100.15
140_L361_I0.5100.15
261_W476_I0.5090.15
57_G61_K0.5080.15
241_C583_Y0.5070.15
219_N314_S0.5070.15
241_C584_L0.5060.15
238_I418_W0.5060.15
312_I470_L0.5060.15
152_R242_V0.5030.15
52_Q59_F0.5020.15
49_K54_L0.5020.15
50_R115_E0.5020.15
237_E407_V0.5020.15
229_I251_G0.5020.15
393_A407_V0.5020.15
390_Y398_T0.5020.15
48_I52_Q0.5010.15
348_A491_A0.5010.15
302_I482_N0.5010.15
57_G109_L0.5010.15
221_P227_F0.5010.15
228_R575_S0.5000.15
221_P318_Y0.5000.15
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3i9v4 1 0.6326 100 0.486 Contact Map
4omfA 1 0.5789 100 0.605 Contact Map
3ze9B 1 0.594 100 0.612 Contact Map
4kn9L 2 0.5906 100 0.612 Contact Map
4u9hL 1 0.5973 100 0.622 Contact Map
4uqlQ 1 0.6057 100 0.626 Contact Map
1e3dB 1 0.604 100 0.634 Contact Map
1yq9H 1 0.5956 100 0.637 Contact Map
4ue3L 2 0.6292 100 0.643 Contact Map
3myrB 2 0.6023 100 0.654 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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