NUOCD - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

NUOCD - NADH-quinone oxidoreductase subunit C/D

UniProt:	P33599	Sequences: MTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12084
Length:	596 (507)
Sequences:	621 (360)
Seq/√Len:	16.0

ECOLI - NUOCD HYCE HYFG
HALSA - Q9HRL9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
456_V	461_T	5.840	1.00
384_P	478_E	5.536	1.00
453_G	468_E	5.257	1.00
431_D	436_K	4.086	1.00
420_T	567_Q	3.830	1.00
272_E	590_V	3.637	1.00
302_I	364_V	3.523	0.99
167_K	257_E	3.479	0.99
449_E	472_Q	3.346	0.99
410_Y	420_T	3.306	0.99
448_F	479_Q	3.201	0.99
408_A	583_Y	3.086	0.99
54_L	125_K	3.016	0.98
120_V	145_F	2.910	0.98
119_H	146_D	2.842	0.98
254_K	257_E	2.803	0.97
148_H	151_L	2.712	0.97
448_F	476_I	2.697	0.97
388_A	471_R	2.690	0.97
89_A	92_F	2.646	0.96
431_D	450_I	2.640	0.96
552_S	555_T	2.559	0.95
381_D	478_E	2.406	0.94
468_E	472_Q	2.404	0.93
571_A	587_I	2.382	0.93
374_R	378_E	2.352	0.93
411_G	414_E	2.351	0.93
348_A	375_L	2.313	0.92
296_P	299_V	2.267	0.91
272_E	593_D	2.256	0.91
304_V	446_F	2.217	0.90
50_R	117_D	2.203	0.90
256_G	555_T	2.198	0.90
321_T	325_D	2.195	0.90
74_H	95_F	2.171	0.89
298_R	367_D	2.167	0.89
295_V	300_N	2.164	0.89
227_F	565_L	2.136	0.89
58_D	62_K	2.130	0.88
46_V	109_L	2.122	0.88
285_L	441_S	2.116	0.88
290_L	529_S	2.103	0.88
115_E	118_L	2.095	0.88
138_W	151_L	2.045	0.86
309_L	342_I	2.025	0.86
275_G	593_D	2.013	0.85
274_L	593_D	1.941	0.83
274_L	590_V	1.940	0.83
298_R	485_P	1.932	0.83
222_S	318_Y	1.929	0.83
305_M	480_C	1.915	0.82
229_I	241_C	1.898	0.82
297_D	445_N	1.876	0.81
297_D	300_N	1.867	0.80
222_S	591_M	1.850	0.80
53_L	342_I	1.849	0.80
590_V	593_D	1.834	0.79
380_L	478_E	1.827	0.79
379_F	383_M	1.821	0.79
528_E	543_Y	1.819	0.79
304_V	442_G	1.816	0.79
431_D	437_A	1.798	0.78
575_S	583_Y	1.797	0.78
281_M	307_S	1.789	0.77
401_K	405_Q	1.779	0.77
274_L	588_D	1.775	0.77
67_Y	344_D	1.750	0.76
325_D	588_D	1.737	0.75
94_V	120_V	1.734	0.75
449_E	475_R	1.728	0.75
294_T	300_N	1.726	0.75
472_Q	475_R	1.715	0.74
79_R	92_F	1.709	0.74
272_E	588_D	1.705	0.74
229_I	591_M	1.703	0.74
150_N	242_V	1.702	0.74
275_G	278_V	1.700	0.74
167_K	254_K	1.679	0.73
567_Q	571_A	1.661	0.72
342_I	585_G	1.627	0.70
58_D	126_L	1.608	0.69
213_F	585_G	1.605	0.69
221_P	224_H	1.604	0.69
122_T	134_E	1.586	0.68
325_D	590_V	1.586	0.68
400_L	404_S	1.579	0.68
420_T	424_G	1.568	0.67
302_I	368_L	1.567	0.67
352_F	389_S	1.566	0.67
227_F	318_Y	1.562	0.67
75_G	141_F	1.562	0.67
436_K	450_I	1.562	0.67
140_L	302_I	1.553	0.67
151_L	290_L	1.545	0.66
448_F	451_P	1.535	0.66
295_V	491_A	1.533	0.66
94_V	141_F	1.523	0.65
41_T	45_V	1.520	0.65
250_R	276_G	1.510	0.64
96_Y	238_I	1.510	0.64
274_L	559_T	1.510	0.64
171_A	255_M	1.509	0.64
229_I	537_K	1.507	0.64
296_P	491_A	1.498	0.64
264_Y	283_Y	1.498	0.64
446_F	482_N	1.493	0.63
306_L	358_W	1.466	0.62
289_K	531_Q	1.462	0.62
154_I	350_T	1.462	0.62
304_V	441_S	1.456	0.61
53_L	102_D	1.454	0.61
250_R	592_S	1.453	0.61
318_Y	591_M	1.449	0.61
454_G	457_S	1.445	0.61
272_E	325_D	1.438	0.60
451_P	468_E	1.438	0.60
53_L	57_G	1.418	0.59
345_L	359_F	1.417	0.59
100_S	103_R	1.411	0.59
310_F	356_P	1.408	0.59
229_I	580_L	1.408	0.59
401_K	460_Y	1.403	0.58
301_V	485_P	1.399	0.58
250_R	272_E	1.394	0.58
314_S	535_A	1.391	0.58
227_F	591_M	1.382	0.57
453_G	456_V	1.364	0.56
272_E	537_K	1.360	0.56
338_D	382_W	1.358	0.56
273_Y	310_F	1.355	0.56
321_T	588_D	1.346	0.55
92_F	109_L	1.342	0.55
559_T	588_D	1.336	0.55
231_L	585_G	1.334	0.55
53_L	121_P	1.318	0.54
231_L	241_C	1.313	0.53
436_K	448_F	1.313	0.53
94_V	560_P	1.305	0.53
318_Y	588_D	1.305	0.53
412_A	428_T	1.302	0.53
391_E	471_R	1.298	0.52
559_T	590_V	1.297	0.52
278_V	536_T	1.295	0.52
273_Y	590_V	1.286	0.52
224_H	325_D	1.282	0.52
321_T	590_V	1.273	0.51
225_G	273_Y	1.272	0.51
588_D	593_D	1.270	0.51
151_L	154_I	1.269	0.51
122_T	436_K	1.266	0.51
275_G	325_D	1.266	0.51
141_F	165_L	1.253	0.50
273_Y	591_M	1.244	0.49
140_L	430_I	1.243	0.49
109_L	577_V	1.235	0.49
274_L	536_T	1.234	0.49
272_E	275_G	1.229	0.48
216_L	581_I	1.226	0.48
59_F	62_K	1.224	0.48
299_V	586_S	1.224	0.48
434_V	530_F	1.222	0.48
405_Q	460_Y	1.219	0.48
44_P	56_V	1.217	0.48
120_V	143_I	1.216	0.48
412_A	430_I	1.211	0.47
364_V	383_M	1.211	0.47
48_I	102_D	1.211	0.47
530_F	539_I	1.209	0.47
165_L	443_Y	1.201	0.47
272_E	559_T	1.200	0.47
94_V	109_L	1.200	0.47
377_R	482_N	1.198	0.47
391_E	467_V	1.198	0.47
124_T	578_S	1.192	0.46
280_E	359_F	1.192	0.46
238_I	572_I	1.190	0.46
532_M	539_I	1.184	0.46
379_F	474_L	1.183	0.46
224_H	585_G	1.183	0.46
219_N	223_A	1.181	0.46
147_G	478_E	1.180	0.46
225_G	310_F	1.179	0.46
275_G	590_V	1.179	0.46
324_Q	588_D	1.178	0.45
464_M	530_F	1.171	0.45
211_F	232_Q	1.168	0.45
114_A	117_D	1.166	0.45
437_A	450_I	1.161	0.45
264_Y	555_T	1.160	0.44
219_N	591_M	1.153	0.44
156_M	588_D	1.152	0.44
320_S	466_K	1.151	0.44
464_M	468_E	1.150	0.44
256_G	264_Y	1.148	0.44
138_W	145_F	1.137	0.43
190_M	194_T	1.137	0.43
295_V	481_L	1.132	0.43
227_F	241_C	1.123	0.42
213_F	242_V	1.113	0.42
431_D	452_V	1.113	0.42
261_W	546_S	1.105	0.41
525_P	553_Y	1.104	0.41
109_L	394_A	1.104	0.41
565_L	594_V	1.104	0.41
415_A	425_L	1.098	0.41
565_L	591_M	1.096	0.41
170_P	173_A	1.091	0.41
410_Y	428_T	1.090	0.40
446_F	480_C	1.087	0.40
356_P	542_Y	1.083	0.40
453_G	461_T	1.083	0.40
131_N	148_H	1.079	0.40
561_S	593_D	1.078	0.40
46_V	63_L	1.075	0.40
383_M	557_V	1.074	0.40
155_M	215_N	1.074	0.40
484_M	487_G	1.072	0.39
307_S	440_Y	1.071	0.39
315_H	469_E	1.071	0.39
345_L	379_F	1.067	0.39
59_F	73_L	1.065	0.39
589_F	592_S	1.062	0.39
274_L	594_V	1.058	0.39
132_W	154_I	1.054	0.38
136_E	556_R	1.053	0.38
219_N	222_S	1.052	0.38
310_F	591_M	1.052	0.38
248_H	424_G	1.043	0.38
420_T	423_A	1.040	0.38
260_S	263_S	1.039	0.38
395_L	460_Y	1.033	0.37
322_F	559_T	1.033	0.37
216_L	222_S	1.030	0.37
398_T	533_I	1.027	0.37
248_H	339_R	1.027	0.37
123_F	525_P	1.025	0.37
470_L	477_L	1.023	0.37
457_S	571_A	1.020	0.37
127_F	246_G	1.016	0.36
259_Q	267_Y	1.015	0.36
193_L	196_K	1.013	0.36
40_R	49_K	1.012	0.36
313_N	343_Y	1.012	0.36
275_G	313_N	1.010	0.36
275_G	588_D	1.008	0.36
271_I	557_V	1.006	0.36
223_A	408_A	1.004	0.36
297_D	388_A	1.003	0.36
539_I	558_R	1.003	0.36
219_N	565_L	1.002	0.36
542_Y	557_V	0.995	0.35
271_I	542_Y	0.994	0.35
327_G	405_Q	0.988	0.35
370_R	481_L	0.988	0.35
265_I	276_G	0.987	0.35
196_K	300_N	0.987	0.35
309_L	345_L	0.987	0.35
321_T	354_M	0.986	0.35
52_Q	55_E	0.985	0.35
206_T	210_D	0.985	0.35
317_L	588_D	0.984	0.35
224_H	595_D	0.983	0.35
294_T	475_R	0.982	0.35
107_I	130_A	0.979	0.34
446_F	450_I	0.975	0.34
246_G	357_A	0.975	0.34
102_D	374_R	0.975	0.34
470_L	482_N	0.972	0.34
488_P	495_L	0.971	0.34
413_K	486_E	0.968	0.34
220_H	595_D	0.966	0.34
536_T	559_T	0.965	0.34
224_H	584_L	0.965	0.34
226_A	537_K	0.964	0.34
436_K	440_Y	0.961	0.34
141_F	167_K	0.960	0.33
49_K	147_G	0.959	0.33
559_T	593_D	0.958	0.33
219_N	590_V	0.956	0.33
125_K	392_K	0.955	0.33
139_D	163_H	0.954	0.33
271_I	592_S	0.951	0.33
275_G	321_T	0.951	0.33
475_R	478_E	0.948	0.33
224_H	321_T	0.947	0.33
294_T	378_E	0.947	0.33
298_R	448_F	0.946	0.33
406_G	578_S	0.945	0.33
152_R	326_V	0.944	0.33
249_H	466_K	0.940	0.32
216_L	231_L	0.939	0.32
151_L	544_L	0.939	0.32
301_V	445_N	0.938	0.32
407_V	576_L	0.935	0.32
166_R	327_G	0.933	0.32
166_R	283_Y	0.932	0.32
340_Q	466_K	0.930	0.32
157_P	588_D	0.929	0.32
219_N	589_F	0.929	0.32
269_D	357_A	0.929	0.32
216_L	585_G	0.927	0.32
221_P	565_L	0.926	0.32
320_S	335_A	0.924	0.32
337_T	559_T	0.918	0.31
141_F	166_R	0.917	0.31
48_I	51_E	0.915	0.31
246_G	325_D	0.913	0.31
67_Y	342_I	0.913	0.31
163_H	450_I	0.910	0.31
57_G	123_F	0.909	0.31
339_R	354_M	0.908	0.31
321_T	593_D	0.906	0.31
383_M	449_E	0.906	0.31
89_A	93_S	0.906	0.31
340_Q	343_Y	0.905	0.31
226_A	591_M	0.904	0.31
325_D	354_M	0.903	0.31
352_F	355_H	0.903	0.31
320_S	339_R	0.903	0.31
413_K	483_N	0.901	0.30
571_A	589_F	0.901	0.30
213_F	537_K	0.899	0.30
340_Q	532_M	0.897	0.30
223_A	227_F	0.897	0.30
226_A	459_C	0.897	0.30
318_Y	582_V	0.894	0.30
383_M	470_L	0.894	0.30
59_F	66_P	0.893	0.30
530_F	541_S	0.893	0.30
79_R	168_D	0.893	0.30
223_A	226_A	0.891	0.30
55_E	58_D	0.890	0.30
314_S	588_D	0.885	0.30
139_D	318_Y	0.884	0.30
213_F	584_L	0.883	0.30
476_I	480_C	0.881	0.30
117_D	143_I	0.879	0.29
535_A	559_T	0.877	0.29
168_D	577_V	0.876	0.29
439_P	487_G	0.874	0.29
231_L	584_L	0.873	0.29
153_R	460_Y	0.872	0.29
117_D	294_T	0.870	0.29
287_V	327_G	0.870	0.29
544_L	555_T	0.870	0.29
96_Y	534_E	0.867	0.29
49_K	55_E	0.866	0.29
41_T	46_V	0.856	0.28
140_L	156_M	0.855	0.28
305_M	449_E	0.850	0.28
298_R	487_G	0.849	0.28
156_M	482_N	0.849	0.28
49_K	52_Q	0.847	0.28
222_S	282_P	0.847	0.28
314_S	587_I	0.846	0.28
350_T	356_P	0.844	0.28
535_A	540_N	0.843	0.28
137_T	143_I	0.843	0.28
244_D	310_F	0.843	0.28
593_D	596_R	0.841	0.28
434_V	532_M	0.840	0.28
330_T	407_V	0.840	0.28
247_Y	350_T	0.836	0.27
267_Y	400_L	0.836	0.27
447_D	479_Q	0.835	0.27
138_W	223_A	0.834	0.27
284_V	292_G	0.833	0.27
219_N	581_I	0.832	0.27
319_I	408_A	0.832	0.27
63_L	66_P	0.829	0.27
241_C	572_I	0.827	0.27
484_M	557_V	0.827	0.27
221_P	314_S	0.825	0.27
290_L	360_R	0.824	0.27
572_I	583_Y	0.823	0.27
219_N	227_F	0.821	0.27
118_L	168_D	0.820	0.27
390_Y	394_A	0.819	0.27
324_Q	593_D	0.819	0.27
109_L	271_I	0.817	0.27
132_W	562_F	0.816	0.26
225_G	280_E	0.816	0.26
412_A	457_S	0.815	0.26
272_E	594_V	0.814	0.26
221_P	584_L	0.810	0.26
589_F	593_D	0.810	0.26
222_S	589_F	0.806	0.26
565_L	581_I	0.805	0.26
223_A	591_M	0.805	0.26
277_C	457_S	0.804	0.26
50_R	55_E	0.804	0.26
226_A	572_I	0.802	0.26
152_R	230_V	0.801	0.26
124_T	556_R	0.799	0.26
247_Y	396_Q	0.799	0.26
248_H	589_F	0.798	0.26
147_G	341_K	0.798	0.26
290_L	546_S	0.791	0.25
304_V	480_C	0.791	0.25
305_M	477_L	0.790	0.25
117_D	388_A	0.788	0.25
107_I	586_S	0.788	0.25
59_F	67_Y	0.785	0.25
281_M	592_S	0.781	0.25
230_V	585_G	0.780	0.25
325_D	593_D	0.780	0.25
246_G	358_W	0.778	0.25
106_D	438_R	0.778	0.25
134_E	558_R	0.778	0.25
167_K	525_P	0.777	0.25
117_D	141_F	0.777	0.25
107_I	378_E	0.776	0.25
389_S	392_K	0.776	0.25
148_H	279_N	0.774	0.25
324_Q	559_T	0.772	0.25
286_A	544_L	0.771	0.25
434_V	574_G	0.771	0.25
248_H	273_Y	0.770	0.24
250_R	348_A	0.767	0.24
472_Q	577_V	0.765	0.24
399_I	548_G	0.765	0.24
346_V	355_H	0.764	0.24
367_D	485_P	0.764	0.24
318_Y	321_T	0.763	0.24
95_F	169_Y	0.762	0.24
274_L	596_R	0.761	0.24
61_K	67_Y	0.761	0.24
126_L	454_G	0.761	0.24
463_V	467_V	0.759	0.24
120_V	339_R	0.757	0.24
224_H	318_Y	0.757	0.24
169_Y	176_F	0.757	0.24
125_K	491_A	0.757	0.24
226_A	241_C	0.756	0.24
126_L	413_K	0.756	0.24
276_G	354_M	0.755	0.24
269_D	442_G	0.755	0.24
224_H	227_F	0.754	0.24
119_H	144_T	0.754	0.24
136_E	350_T	0.753	0.24
394_A	463_V	0.749	0.24
222_S	561_S	0.749	0.24
75_G	143_I	0.746	0.23
419_G	434_V	0.745	0.23
328_A	394_A	0.743	0.23
46_V	55_E	0.739	0.23
445_N	483_N	0.739	0.23
296_P	535_A	0.734	0.23
157_P	355_H	0.733	0.23
246_G	339_R	0.733	0.23
318_Y	580_L	0.731	0.23
215_N	273_Y	0.730	0.23
273_Y	581_I	0.727	0.23
133_Y	356_P	0.727	0.23
122_T	125_K	0.724	0.23
305_M	481_L	0.723	0.23
307_S	459_C	0.722	0.22
70_L	73_L	0.721	0.22
383_M	488_P	0.719	0.22
256_G	544_L	0.716	0.22
139_D	466_K	0.715	0.22
136_E	250_R	0.715	0.22
42_G	352_F	0.713	0.22
226_A	408_A	0.713	0.22
124_T	143_I	0.713	0.22
374_R	385_K	0.713	0.22
440_Y	558_R	0.712	0.22
222_S	231_L	0.710	0.22
39_T	42_G	0.708	0.22
191_E	238_I	0.708	0.22
346_V	350_T	0.707	0.22
537_K	589_F	0.706	0.22
267_Y	404_S	0.705	0.22
377_R	481_L	0.705	0.22
222_S	565_L	0.705	0.22
354_M	559_T	0.704	0.22
117_D	287_V	0.704	0.22
539_I	592_S	0.702	0.22
44_P	48_I	0.702	0.22
568_I	591_M	0.698	0.22
291_A	524_M	0.695	0.21
307_S	592_S	0.694	0.21
216_L	580_L	0.693	0.21
192_A	195_F	0.692	0.21
118_L	166_R	0.692	0.21
245_I	310_F	0.691	0.21
302_I	448_F	0.690	0.21
301_V	483_N	0.690	0.21
293_I	368_L	0.690	0.21
275_G	559_T	0.689	0.21
55_E	62_K	0.687	0.21
113_L	117_D	0.686	0.21
62_K	417_E	0.686	0.21
404_S	453_G	0.685	0.21
77_D	167_K	0.684	0.21
231_L	406_G	0.682	0.21
222_S	584_L	0.682	0.21
45_V	48_I	0.681	0.21
151_L	592_S	0.681	0.21
545_T	553_Y	0.680	0.21
373_D	377_R	0.680	0.21
380_L	384_P	0.680	0.21
41_T	44_P	0.679	0.21
144_T	207_E	0.678	0.21
190_M	461_T	0.676	0.21
243_P	324_Q	0.676	0.21
157_P	584_L	0.676	0.21
313_N	317_L	0.676	0.21
274_L	325_D	0.675	0.21
140_L	307_S	0.674	0.21
548_G	553_Y	0.674	0.21
317_L	332_V	0.674	0.21
76_M	545_T	0.674	0.21
268_T	334_F	0.673	0.21
231_L	318_Y	0.672	0.21
378_E	486_E	0.671	0.20
314_S	540_N	0.670	0.20
134_E	149_P	0.669	0.20
240_D	305_M	0.668	0.20
136_E	557_V	0.668	0.20
229_I	243_P	0.666	0.20
221_P	231_L	0.666	0.20
584_L	591_M	0.665	0.20
383_M	474_L	0.664	0.20
132_W	246_G	0.664	0.20
540_N	592_S	0.663	0.20
420_T	430_I	0.663	0.20
51_E	103_R	0.663	0.20
472_Q	476_I	0.661	0.20
434_V	539_I	0.660	0.20
323_I	400_L	0.659	0.20
331_P	425_L	0.657	0.20
493_H	496_T	0.653	0.20
310_F	593_D	0.652	0.20
241_C	340_Q	0.652	0.20
164_P	235_G	0.650	0.20
170_P	556_R	0.650	0.20
284_V	359_F	0.649	0.20
189_E	194_T	0.648	0.20
57_G	98_L	0.648	0.20
323_I	490_K	0.647	0.20
318_Y	584_L	0.645	0.20
76_M	571_A	0.644	0.19
281_M	306_L	0.643	0.19
61_K	127_F	0.641	0.19
167_K	553_Y	0.640	0.19
322_F	427_A	0.638	0.19
136_E	423_A	0.637	0.19
208_N	322_F	0.637	0.19
409_A	549_S	0.636	0.19
51_E	59_F	0.636	0.19
129_N	539_I	0.636	0.19
272_E	320_S	0.634	0.19
207_E	484_M	0.634	0.19
448_F	472_Q	0.634	0.19
323_I	345_L	0.633	0.19
160_W	276_G	0.633	0.19
400_L	446_F	0.633	0.19
55_E	59_F	0.631	0.19
590_V	594_V	0.629	0.19
221_P	585_G	0.629	0.19
274_L	321_T	0.629	0.19
248_H	568_I	0.628	0.19
485_P	489_F	0.627	0.19
262_H	390_Y	0.624	0.19
321_T	559_T	0.623	0.19
107_I	392_K	0.622	0.19
62_K	66_P	0.622	0.19
78_E	160_W	0.622	0.19
392_K	396_Q	0.621	0.19
226_A	272_E	0.620	0.19
109_L	297_D	0.620	0.19
250_R	262_H	0.619	0.19
55_E	482_N	0.618	0.19
241_C	591_M	0.618	0.19
134_E	440_Y	0.618	0.19
132_W	357_A	0.617	0.19
169_Y	406_G	0.616	0.18
235_G	253_E	0.615	0.18
448_F	452_V	0.614	0.18
576_L	581_I	0.614	0.18
63_L	124_T	0.611	0.18
296_P	488_P	0.610	0.18
408_A	571_A	0.609	0.18
244_D	267_Y	0.608	0.18
226_A	590_V	0.608	0.18
232_Q	537_K	0.607	0.18
56_V	59_F	0.605	0.18
526_A	549_S	0.605	0.18
470_L	527_N	0.603	0.18
222_S	581_I	0.602	0.18
269_D	356_P	0.601	0.18
225_G	581_I	0.600	0.18
231_L	354_M	0.600	0.18
360_R	492_D	0.599	0.18
281_M	557_V	0.599	0.18
205_G	209_E	0.598	0.18
340_Q	465_L	0.598	0.18
414_E	570_A	0.598	0.18
228_R	333_F	0.598	0.18
562_F	590_V	0.598	0.18
51_E	209_E	0.596	0.18
48_I	294_T	0.596	0.18
75_G	93_S	0.594	0.18
287_V	364_V	0.593	0.18
444_E	447_D	0.592	0.18
124_T	131_N	0.592	0.18
154_I	356_P	0.592	0.18
475_R	479_Q	0.591	0.18
73_L	295_V	0.591	0.18
340_Q	408_A	0.591	0.18
273_Y	589_F	0.590	0.18
228_R	591_M	0.590	0.18
172_R	175_E	0.589	0.18
120_V	582_V	0.588	0.18
576_L	584_L	0.588	0.18
306_L	374_R	0.586	0.17
215_N	225_G	0.585	0.17
444_E	470_L	0.584	0.17
341_K	383_M	0.582	0.17
77_D	254_K	0.582	0.17
451_P	484_M	0.581	0.17
73_L	563_A	0.581	0.17
338_D	390_Y	0.581	0.17
107_I	381_D	0.580	0.17
107_I	407_V	0.579	0.17
321_T	535_A	0.577	0.17
276_G	317_L	0.577	0.17
48_I	478_E	0.576	0.17
163_H	292_G	0.576	0.17
562_F	584_L	0.576	0.17
482_N	486_E	0.576	0.17
280_E	527_N	0.576	0.17
230_V	242_V	0.575	0.17
168_D	254_K	0.574	0.17
313_N	342_I	0.574	0.17
46_V	60_L	0.573	0.17
164_P	350_T	0.572	0.17
256_G	556_R	0.571	0.17
290_L	307_S	0.571	0.17
276_G	356_P	0.571	0.17
260_S	475_R	0.569	0.17
139_D	165_L	0.569	0.17
233_L	533_I	0.568	0.17
432_F	437_A	0.567	0.17
325_D	339_R	0.567	0.17
305_M	438_R	0.567	0.17
324_Q	390_Y	0.567	0.17
54_L	111_V	0.566	0.17
341_K	382_W	0.566	0.17
154_I	562_F	0.565	0.17
219_N	272_E	0.565	0.17
150_N	230_V	0.564	0.17
321_T	332_V	0.562	0.17
319_I	387_L	0.562	0.17
224_H	588_D	0.562	0.17
361_I	476_I	0.562	0.17
235_G	554_R	0.562	0.17
98_L	147_G	0.562	0.17
50_R	62_K	0.561	0.17
250_R	397_N	0.561	0.17
584_L	588_D	0.561	0.17
333_F	593_D	0.560	0.17
42_G	61_K	0.559	0.17
585_G	588_D	0.558	0.17
227_F	245_I	0.558	0.17
476_I	546_S	0.556	0.16
62_K	444_E	0.556	0.16
413_K	482_N	0.556	0.16
178_P	488_P	0.555	0.16
314_S	364_V	0.554	0.16
243_P	356_P	0.552	0.16
59_F	63_L	0.551	0.16
544_L	574_G	0.550	0.16
129_N	141_F	0.549	0.16
345_L	348_A	0.548	0.16
570_A	575_S	0.547	0.16
384_P	474_L	0.547	0.16
313_N	350_T	0.547	0.16
165_L	220_H	0.546	0.16
524_M	550_T	0.546	0.16
120_V	300_N	0.544	0.16
354_M	548_G	0.544	0.16
120_V	387_L	0.544	0.16
241_C	580_L	0.544	0.16
340_Q	527_N	0.540	0.16
361_I	557_V	0.540	0.16
362_G	458_D	0.540	0.16
216_L	227_F	0.539	0.16
277_C	356_P	0.538	0.16
381_D	384_P	0.538	0.16
365_A	368_L	0.538	0.16
135_R	577_V	0.537	0.16
226_A	580_L	0.537	0.16
260_S	456_V	0.536	0.16
536_T	589_F	0.536	0.16
581_I	591_M	0.536	0.16
219_N	339_R	0.536	0.16
396_Q	578_S	0.536	0.16
537_K	591_M	0.535	0.16
152_R	158_Q	0.535	0.16
132_W	148_H	0.534	0.16
537_K	592_S	0.533	0.16
46_V	114_A	0.533	0.16
113_L	265_I	0.533	0.16
58_D	63_L	0.532	0.16
319_I	477_L	0.532	0.16
268_T	273_Y	0.532	0.16
147_G	413_K	0.532	0.16
248_H	593_D	0.531	0.16
170_P	222_S	0.531	0.16
415_A	442_G	0.530	0.16
70_L	209_E	0.530	0.16
134_E	423_A	0.528	0.16
54_L	121_P	0.527	0.16
54_L	407_V	0.527	0.16
143_I	409_A	0.526	0.16
251_G	254_K	0.525	0.15
260_S	297_D	0.525	0.15
166_R	254_K	0.525	0.15
394_A	408_A	0.522	0.15
560_P	588_D	0.522	0.15
221_P	590_V	0.521	0.15
561_S	589_F	0.519	0.15
275_G	536_T	0.518	0.15
216_L	591_M	0.518	0.15
51_E	204_R	0.517	0.15
74_H	97_H	0.517	0.15
204_R	208_N	0.516	0.15
226_A	585_G	0.516	0.15
171_A	238_I	0.516	0.15
90_A	93_S	0.515	0.15
399_I	577_V	0.514	0.15
102_D	305_M	0.514	0.15
191_E	194_T	0.512	0.15
227_F	580_L	0.511	0.15
529_S	576_L	0.510	0.15
140_L	361_I	0.510	0.15
261_W	476_I	0.509	0.15
57_G	61_K	0.508	0.15
241_C	583_Y	0.507	0.15
219_N	314_S	0.507	0.15
241_C	584_L	0.506	0.15
238_I	418_W	0.506	0.15
312_I	470_L	0.506	0.15
152_R	242_V	0.503	0.15
52_Q	59_F	0.502	0.15
49_K	54_L	0.502	0.15
50_R	115_E	0.502	0.15
237_E	407_V	0.502	0.15
229_I	251_G	0.502	0.15
393_A	407_V	0.502	0.15
390_Y	398_T	0.502	0.15
48_I	52_Q	0.501	0.15
348_A	491_A	0.501	0.15
302_I	482_N	0.501	0.15
57_G	109_L	0.501	0.15
221_P	227_F	0.501	0.15
228_R	575_S	0.500	0.15
221_P	318_Y	0.500	0.15

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3i9v4	1	0.6326	100	0.486	Contact Map
4omfA	1	0.5789	100	0.605	Contact Map
3ze9B	1	0.594	100	0.612	Contact Map
4kn9L	2	0.5906	100	0.612	Contact Map
4u9hL	1	0.5973	100	0.622	Contact Map
4uqlQ	1	0.6057	100	0.626	Contact Map
1e3dB	1	0.604	100	0.634	Contact Map
1yq9H	1	0.5956	100	0.637	Contact Map
4ue3L	2	0.6292	100	0.643	Contact Map
3myrB	2	0.6023	100	0.654	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0141 seconds.