GREMLIN Database
YEHB - Outer membrane usher protein YehB
UniProt: P33341 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11988
Length: 826 (754)
Sequences: 2703 (2042)
Seq/√Len: 74.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
82_C104_C4.9471.00
634_N649_S4.5141.00
229_D243_R4.4491.00
672_A703_M4.2801.00
767_Y799_V4.2341.00
309_D321_T4.1391.00
664_A699_I4.1251.00
160_L178_V4.0841.00
273_A314_E4.0771.00
751_W791_N4.0141.00
242_F358_F4.0111.00
338_S365_Y3.9761.00
500_G525_Y3.8941.00
338_S363_Y3.8901.00
265_V277_I3.8571.00
636_S647_G3.7121.00
313_K319_V3.5501.00
675_N742_N3.5191.00
311_S319_V3.4531.00
656_A661_V3.3791.00
274_L313_K3.3761.00
654_I663_L3.3321.00
55_Q71_E3.2401.00
795_P813_F3.1801.00
188_G216_R3.1781.00
503_S524_S3.1721.00
769_V786_L3.1661.00
270_Q318_S3.1381.00
278_E283_V3.0191.00
342_L361_A2.9331.00
527_N534_Y2.9141.00
540_Q550_K2.9141.00
58_I118_W2.8661.00
606_G623_N2.8481.00
312_V320_T2.8091.00
755_A811_I2.7921.00
61_Y124_R2.7831.00
608_N621_G2.7761.00
769_V797_V2.7691.00
671_F738_V2.7511.00
526_S535_T2.7241.00
160_L176_T2.6561.00
191_L214_L2.6461.00
276_T283_V2.6401.00
633_V650_V2.6371.00
577_N589_N2.6271.00
117_T126_D2.5651.00
769_V799_V2.5621.00
58_I74_V2.5521.00
183_G192_H2.5511.00
270_Q320_T2.5471.00
191_L212_L2.5471.00
119_D122_V2.5321.00
402_D422_Q2.5051.00
675_N740_L2.4451.00
195_A207_W2.4401.00
796_S810_T2.4011.00
631_A650_V2.3951.00
162_Q176_T2.3811.00
151_I673_V2.3761.00
662_N693_N2.3731.00
408_S454_H2.3581.00
74_V81_T2.3391.00
657_W662_N2.3391.00
771_D775_H2.3231.00
755_A799_V2.3141.00
55_Q73_I2.3111.00
230_M242_F2.3021.00
26_T29_T2.2841.00
57_D71_E2.2791.00
278_E309_D2.2791.00
153_A738_V2.2781.00
184_L191_L2.2691.00
508_W519_K2.2571.00
152_N184_L2.2491.00
757_R763_L2.2481.00
654_I661_V2.2361.00
218_F221_L2.2281.00
266_Q295_A2.2121.00
226_R248_F2.1831.00
107_F114_G2.1741.00
116_Y127_F2.1701.00
537_A553_N2.1661.00
504_L523_L2.1651.00
672_A711_L2.1611.00
106_T109_Q2.1491.00
539_S551_R2.1371.00
94_N97_N2.1261.00
276_T313_K2.1181.00
154_F184_L2.0971.00
709_N733_P2.0781.00
164_Y174_K2.0731.00
653_G664_A2.0721.00
796_S812_T2.0581.00
385_A404_T2.0511.00
532_I556_I2.0341.00
278_E311_S2.0331.00
275_V312_V2.0311.00
158_Y652_G2.0231.00
141_Y144_P2.0121.00
653_G667_L2.0041.00
215_E224_T1.9961.00
156_T182_S1.9901.00
251_M339_K1.9471.00
374_Y402_D1.9451.00
658_S740_L1.9401.00
673_V697_V1.9391.00
624_L635_G1.9141.00
60_I72_I1.8881.00
676_A679_I1.8811.00
269_A289_V1.8601.00
535_T555_F1.8581.00
755_A786_L1.8241.00
659_G740_L1.8181.00
536_L554_I1.8111.00
657_W697_V1.8101.00
226_R230_M1.7961.00
610_S619_T1.7931.00
405_K419_Q1.7831.00
61_Y126_D1.7821.00
797_V811_I1.7821.00
757_R761_Q1.7661.00
708_E730_I1.7661.00
579_T587_A1.7631.00
690_R698_V1.7541.00
301_L304_G1.7441.00
237_F376_G1.7441.00
763_L799_V1.7381.00
628_A633_V1.7361.00
242_F343_A1.7241.00
309_D323_L1.7161.00
576_S592_G1.7141.00
217_G706_Y1.7091.00
218_F247_L1.7061.00
529_L534_Y1.7031.00
721_E749_K1.6911.00
51_P120_I1.6901.00
190_Q734_Y1.6891.00
499_W525_Y1.6891.00
256_N707_R1.6831.00
243_R348_H1.6761.00
667_L671_F1.6751.00
62_V134_V1.6681.00
749_K793_V1.6621.00
119_D126_D1.6591.00
217_G224_T1.6521.00
577_N591_T1.6451.00
420_S444_S1.6351.00
61_Y66_W1.6211.00
277_I296_I1.6151.00
193_S212_L1.6120.99
216_R225_L1.6080.99
310_V322_Y1.6070.99
193_S209_S1.6030.99
84_S87_V1.5990.99
659_G675_N1.5980.99
669_E735_R1.5960.99
242_F246_R1.5920.99
676_A745_T1.5910.99
367_F373_L1.5890.99
111_V114_G1.5810.99
378_M451_F1.5810.99
252_Q735_R1.5770.99
346_R357_D1.5740.99
59_D69_K1.5730.99
598_G602_Q1.5700.99
197_F205_G1.5660.99
384_Y407_H1.5500.99
312_V322_Y1.5490.99
756_L762_S1.5420.99
755_A763_L1.5320.99
223_G340_Y1.5280.99
682_A692_T1.5260.99
401_V423_I1.5250.99
236_I387_T1.5250.99
149_R219_A1.5200.99
420_S442_R1.5190.99
371_L392_W1.5150.99
311_S321_T1.5130.99
611_H618_T1.5120.99
251_M337_V1.5050.99
276_T286_Q1.4970.99
310_V324_V1.4950.99
154_F656_A1.4930.99
230_M343_A1.4920.99
366_G372_T1.4910.99
374_Y389_G1.4800.99
407_H415_V1.4790.99
397_G425_Y1.4730.99
653_G671_F1.4590.99
767_Y801_I1.4560.99
155_Y671_F1.4530.99
607_V622_A1.4460.99
802_D807_L1.4440.99
227_V245_V1.4410.99
324_V332_M1.4400.99
274_L286_Q1.4360.99
725_R744_D1.4340.99
597_V605_Y1.4290.99
246_R341_D1.4250.99
622_A637_Y1.4210.99
265_V308_L1.4110.99
85_R89_K1.3910.98
632_T651_S1.3850.98
159_Y651_S1.3790.98
155_Y738_V1.3780.98
151_I740_L1.3740.98
407_H417_D1.3720.98
189_W216_R1.3610.98
346_R355_Q1.3600.98
639_Q644_R1.3550.98
538_A552_F1.3520.98
250_D735_R1.3510.98
628_A631_A1.3510.98
118_W125_L1.3450.98
754_K785_Q1.3420.98
341_D362_G1.3390.98
94_N135_E1.3370.98
217_G734_Y1.3370.98
683_Y717_Q1.3330.98
87_V91_L1.3290.98
798_N810_T1.3260.98
655_V671_F1.3240.98
538_A550_K1.3240.98
532_I558_I1.3210.98
534_Y554_I1.3150.98
238_D450_T1.3140.98
118_W123_F1.3070.98
128_S290_P1.3060.98
769_V788_I1.2990.98
500_G527_N1.2970.98
489_A504_L1.2930.98
603_F626_W1.2930.98
655_V673_V1.2910.98
794_P814_G1.2900.98
247_L342_L1.2880.97
581_F586_F1.2880.97
371_L390_A1.2790.97
276_T311_S1.2700.97
675_N697_V1.2660.97
218_F225_L1.2600.97
753_I786_L1.2450.97
751_W815_K1.2430.97
486_S509_R1.2420.97
128_S291_P1.2390.97
335_P369_N1.2360.97
152_N186_L1.2350.97
162_Q648_A1.2330.97
194_D211_T1.2330.97
733_P739_V1.2290.97
307_D323_L1.2280.97
420_S512_W1.2270.97
753_I788_I1.2270.97
575_M591_T1.2190.96
296_I299_L1.2180.96
182_S193_S1.2160.96
166_D644_R1.2150.96
590_N606_G1.2020.96
753_I811_I1.1970.96
273_A316_D1.1960.96
798_N808_S1.1960.96
582_D586_F1.1940.96
155_Y183_G1.1930.96
344_A357_D1.1890.96
432_T493_Q1.1860.96
277_I287_K1.1860.96
403_A421_Y1.1810.96
89_K135_E1.1750.96
437_G488_S1.1740.96
592_G606_G1.1700.96
484_K512_W1.1620.95
755_A780_V1.1540.95
662_N695_N1.1500.95
536_L552_F1.1490.95
129_V134_V1.1480.95
60_I70_Y1.1480.95
53_P76_D1.1450.95
243_R346_R1.1420.95
495_L499_W1.1410.95
29_T33_I1.1380.95
485_N510_D1.1360.95
229_D348_H1.1360.95
152_N658_S1.1350.95
272_N314_E1.1350.95
627_N632_T1.1330.95
262_T334_Q1.1330.95
72_I81_T1.1320.95
680_K694_R1.1300.95
620_A639_Q1.1250.95
764_T801_I1.1240.94
676_A682_A1.1210.94
146_N708_E1.1210.94
804_Q807_L1.1170.94
157_S181_N1.1100.94
281_G309_D1.1060.94
86_E90_R1.1060.94
681_D691_T1.1030.94
264_R295_A1.1020.94
134_V290_P1.0950.94
59_D66_W1.0940.94
764_T767_Y1.0890.93
450_T453_D1.0890.93
366_G397_G1.0860.93
64_K126_D1.0760.93
734_Y737_A1.0720.93
419_Q445_S1.0700.93
581_F587_A1.0700.93
307_D325_P1.0700.93
795_P815_K1.0690.93
149_R188_G1.0680.93
277_I285_Y1.0600.93
609_L620_A1.0590.93
347_S455_V1.0570.92
299_L302_A1.0520.92
692_T750_P1.0500.92
255_P366_G1.0450.92
72_I125_L1.0450.92
185_N192_H1.0430.92
189_W214_L1.0400.92
792_E795_P1.0360.92
692_T696_G1.0350.92
152_N738_V1.0340.92
799_V811_I1.0310.91
502_V525_Y1.0310.91
768_E776_N1.0290.91
531_R562_W1.0280.91
178_V182_S1.0260.91
240_V378_M1.0240.91
655_V738_V1.0240.91
561_D565_D1.0220.91
95_S556_I1.0220.91
381_N584_Q1.0170.91
59_D124_R1.0160.91
333_L338_S1.0110.91
77_N80_E1.0100.91
655_V699_I1.0080.91
684_V700_Y1.0070.90
235_D448_Y1.0030.90
139_S300_Q1.0010.90
62_V67_R1.0000.90
136_E297_T0.9990.90
274_L288_E0.9990.90
662_N697_V0.9950.90
725_R746_D0.9940.90
225_L247_L0.9910.90
505_S522_Q0.9850.90
592_G621_G0.9840.89
190_Q736_G0.9830.89
267_G294_F0.9800.89
88_I93_I0.9790.89
151_I738_V0.9790.89
246_R343_A0.9750.89
662_N673_V0.9750.89
115_S128_S0.9750.89
653_G699_I0.9750.89
151_I658_S0.9740.89
245_V614_Q0.9680.89
162_Q174_K0.9660.89
669_E705_P0.9660.89
209_S229_D0.9650.89
302_A305_G0.9630.88
81_T125_L0.9630.88
674_M700_Y0.9630.88
801_I808_S0.9610.88
657_W660_G0.9610.88
434_T443_Y0.9600.88
703_M707_R0.9590.88
710_H728_R0.9490.88
731_A739_V0.9460.88
453_D456_W0.9460.88
729_K741_V0.9430.87
114_G129_V0.9420.87
623_N636_S0.9330.87
359_V379_V0.9330.87
575_M593_L0.9300.87
333_L363_Y0.9280.87
232_T242_F0.9270.86
592_G608_N0.9260.86
222_L254_L0.9230.86
540_Q548_E0.9230.86
248_F341_D0.9220.86
249_R340_Y0.9160.86
603_F624_L0.9130.86
598_G601_D0.9120.86
190_Q737_A0.9110.85
155_Y653_G0.9110.85
41_V44_I0.9090.85
344_A359_V0.9080.85
199_K205_G0.9050.85
409_K415_V0.9040.85
751_W790_T0.9030.85
230_M246_R0.9020.85
111_V133_W0.8980.85
416_F449_R0.8960.85
132_A295_A0.8960.85
388_L401_V0.8950.84
598_G603_F0.8920.84
400_S424_A0.8910.84
361_A377_S0.8880.84
294_F314_E0.8870.84
599_S602_Q0.8860.84
619_T644_R0.8850.84
759_D762_S0.8820.84
231_Y241_R0.8800.83
28_D31_F0.8790.83
722_A747_Q0.8780.83
674_M684_V0.8760.83
418_G445_S0.8760.83
770_N800_A0.8720.83
70_Y90_R0.8700.83
631_A664_A0.8670.83
434_T491_M0.8630.82
299_L334_Q0.8630.82
210_N348_H0.8630.82
492_S503_S0.8620.82
780_V786_L0.8620.82
163_Y645_Q0.8610.82
251_M259_Q0.8610.82
188_G734_Y0.8610.82
726_G729_K0.8600.82
275_V289_V0.8600.82
271_S318_S0.8600.82
187_L216_R0.8590.82
541_A549_E0.8590.82
330_P358_F0.8580.82
259_Q707_R0.8570.82
627_N665_N0.8570.82
693_N696_G0.8560.82
495_L500_G0.8540.82
578_S590_N0.8520.81
579_T589_N0.8500.81
542_Y548_E0.8500.81
181_N194_D0.8490.81
793_V817_I0.8490.81
381_N447_D0.8490.81
221_L247_L0.8460.81
356_S381_N0.8440.81
358_F451_F0.8430.81
637_Y644_R0.8430.81
159_Y684_V0.8420.81
519_K542_Y0.8420.81
223_G247_L0.8410.81
625_T632_T0.8410.81
193_S207_W0.8400.81
416_F447_D0.8400.81
127_F759_D0.8370.80
272_N291_P0.8360.80
232_T708_E0.8320.80
449_R457_A0.8320.80
225_L399_I0.8310.80
150_G660_G0.8270.79
259_Q300_Q0.8260.79
672_A739_V0.8250.79
714_D717_Q0.8250.79
375_G387_T0.8230.79
481_F514_R0.8220.79
781_G785_Q0.8190.79
655_V667_L0.8180.79
36_M50_Q0.8160.79
214_L227_V0.8160.79
453_D483_R0.8160.79
333_L337_V0.8150.78
605_Y609_L0.8140.78
791_N795_P0.8090.78
358_F378_M0.8080.78
263_P267_G0.8040.78
433_S494_S0.8040.78
335_P368_N0.8030.77
170_S607_V0.8030.77
329_V339_K0.8010.77
312_V324_V0.8000.77
653_G656_A0.7990.77
393_N398_A0.7990.77
541_A551_R0.7950.77
26_T31_F0.7940.77
367_F390_A0.7920.76
343_A358_F0.7910.76
673_V740_L0.7910.76
436_F491_M0.7900.76
31_F49_N0.7890.76
149_R217_G0.7880.76
609_L788_I0.7880.76
88_I127_F0.7870.76
409_K436_F0.7850.76
327_A332_M0.7840.76
814_G817_I0.7830.76
673_V738_V0.7820.76
679_I745_T0.7820.76
227_V230_M0.7810.75
226_R242_F0.7810.75
448_Y618_T0.7800.75
343_A360_Q0.7800.75
777_I788_I0.7790.75
287_K296_I0.7790.75
560_F563_G0.7780.75
277_I521_Y0.7750.75
558_I585_G0.7740.75
184_L565_D0.7730.75
771_D777_I0.7730.75
213_Y736_G0.7710.75
41_V45_R0.7710.75
347_S451_F0.7700.74
270_Q314_E0.7690.74
217_G670_T0.7670.74
314_E318_S0.7660.74
148_E151_I0.7660.74
185_N189_W0.7650.74
134_V245_V0.7640.74
149_R734_Y0.7630.74
332_M366_G0.7620.74
413_G480_D0.7620.74
177_Y196_S0.7610.74
72_I90_R0.7610.74
310_V576_S0.7600.73
64_K630_V0.7600.73
724_L727_N0.7590.73
267_G652_G0.7580.73
212_L306_A0.7570.73
622_A635_G0.7570.73
138_E257_S0.7570.73
386_F405_K0.7560.73
382_N409_K0.7540.73
648_A700_Y0.7520.73
275_V556_I0.7520.73
82_C332_M0.7510.73
269_A294_F0.7480.72
60_I312_V0.7460.72
767_Y813_F0.7450.72
486_S723_E0.7440.72
223_G249_R0.7440.72
374_Y387_T0.7410.72
224_T250_D0.7390.71
81_T87_V0.7390.71
437_G440_A0.7380.71
509_R518_S0.7370.71
652_G743_F0.7370.71
246_R256_N0.7360.71
373_L813_F0.7360.71
428_F433_S0.7360.71
67_R91_L0.7350.71
158_Y267_G0.7350.71
263_P269_A0.7340.71
683_Y714_D0.7340.71
365_Y368_N0.7340.71
342_L363_Y0.7330.71
394_T399_I0.7330.71
800_A803_K0.7320.71
420_S441_W0.7320.71
59_D67_R0.7310.71
690_R701_D0.7300.70
157_S671_F0.7290.70
385_A448_Y0.7290.70
693_N697_V0.7290.70
157_S719_D0.7280.70
763_L801_I0.7260.70
222_L249_R0.7260.70
410_Q449_R0.7250.70
424_A440_A0.7250.70
333_L366_G0.7250.70
167_Y170_S0.7240.70
675_N678_G0.7240.70
794_P812_T0.7230.70
665_N690_R0.7230.70
495_L525_Y0.7230.70
750_P789_R0.7230.70
52_L446_R0.7230.70
245_V758_A0.7220.70
606_G609_L0.7220.70
255_P397_G0.7220.70
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424_A437_G0.6450.61
107_F111_V0.6450.61
240_V451_F0.6440.61
657_W693_N0.6440.61
44_I76_D0.6420.61
31_F34_G0.6410.60
51_P762_S0.6400.60
756_L810_T0.6400.60
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142_V732_A0.6380.60
382_N448_Y0.6380.60
66_W124_R0.6370.60
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330_P426_N0.6310.59
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366_G733_P0.6280.59
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534_Y556_I0.5530.50
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250_D385_A0.5500.49
499_W527_N0.5500.49
294_F787_F0.5490.49
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592_G795_P0.5490.49
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376_G402_D0.5460.49
73_I76_D0.5460.49
649_S690_R0.5460.49
166_D172_N0.5460.49
525_Y656_A0.5450.49
751_W795_P0.5450.49
32_M636_S0.5450.49
490_N576_S0.5450.49
41_V714_D0.5450.49
444_S447_D0.5450.49
32_M47_D0.5440.48
380_A451_F0.5440.48
686_G765_F0.5440.48
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43_N227_V0.5430.48
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780_V787_F0.5420.48
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360_Q378_M0.5380.48
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429_V523_L0.5380.48
36_M413_G0.5380.48
446_R482_G0.5380.48
659_G697_V0.5370.48
267_G743_F0.5370.48
200_T245_V0.5370.48
389_G397_G0.5370.48
344_A377_S0.5370.48
307_D578_S0.5360.47
604_N625_T0.5360.47
228_G292_G0.5360.47
118_W358_F0.5360.47
87_V90_R0.5360.47
217_G254_L0.5350.47
495_L620_A0.5340.47
494_S500_G0.5340.47
429_V432_T0.5340.47
290_P294_F0.5330.47
393_N402_D0.5330.47
344_A520_D0.5320.47
344_A396_I0.5320.47
182_S290_P0.5320.47
704_T709_N0.5320.47
170_S416_F0.5310.47
588_S614_Q0.5310.47
313_K488_S0.5310.47
717_Q742_N0.5310.47
58_I120_I0.5300.47
54_G150_G0.5300.47
555_F738_V0.5300.47
123_F795_P0.5300.47
593_L788_I0.5290.47
180_F733_P0.5290.47
303_G395_R0.5290.47
199_K204_P0.5280.46
45_R49_N0.5280.46
63_N743_F0.5280.46
449_R664_A0.5280.46
652_G809_C0.5270.46
404_T442_R0.5270.46
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176_T180_F0.5230.46
252_Q328_A0.5230.46
245_V385_A0.5230.46
80_E367_F0.5220.46
448_Y761_Q0.5220.46
397_G733_P0.5210.46
652_G693_N0.5210.46
185_N237_F0.5210.46
74_V83_L0.5210.46
324_V782_Q0.5210.46
160_L174_K0.5210.46
178_V489_A0.5200.45
37_K684_V0.5200.45
216_R310_V0.5200.45
226_R229_D0.5200.45
232_T640_S0.5190.45
323_L510_D0.5190.45
537_A554_I0.5190.45
273_A315_A0.5190.45
385_A741_V0.5180.45
299_L308_L0.5180.45
432_T436_F0.5170.45
331_N364_Q0.5170.45
490_N800_A0.5170.45
760_G804_Q0.5170.45
220_Q247_L0.5160.45
703_M711_L0.5160.45
684_V698_V0.5160.45
43_N62_V0.5160.45
266_Q504_L0.5160.45
270_Q273_A0.5160.45
339_K738_V0.5160.45
656_A673_V0.5160.45
86_E95_S0.5150.45
316_D672_A0.5150.45
158_Y294_F0.5150.45
703_M739_V0.5150.45
27_F32_M0.5140.45
580_T774_G0.5140.45
313_K318_S0.5140.45
171_G641_S0.5140.45
542_Y580_T0.5130.45
721_E747_Q0.5130.45
439_A489_A0.5130.45
235_D245_V0.5130.45
252_Q670_T0.5130.45
546_H584_Q0.5130.45
653_G734_Y0.5120.44
657_W736_G0.5120.44
189_W267_G0.5120.44
150_G737_A0.5110.44
333_L372_T0.5110.44
158_Y559_P0.5110.44
555_F606_G0.5100.44
272_N288_E0.5100.44
107_F323_L0.5100.44
77_N203_N0.5100.44
760_G784_S0.5090.44
51_P74_V0.5080.44
147_W356_S0.5080.44
127_F565_D0.5080.44
391_G400_S0.5080.44
165_S638_S0.5080.44
549_E582_D0.5080.44
692_T741_V0.5070.44
109_Q384_Y0.5060.44
167_Y172_N0.5060.44
261_F322_Y0.5060.44
249_R425_Y0.5060.44
406_S409_K0.5060.44
117_T413_G0.5060.44
213_Y226_R0.5050.44
329_V398_A0.5050.44
556_I793_V0.5050.44
461_D480_D0.5040.43
260_N334_Q0.5040.43
436_F490_N0.5040.43
139_S301_L0.5040.43
414_D545_N0.5030.43
635_G649_S0.5030.43
209_S799_V0.5030.43
26_T32_M0.5030.43
290_P305_G0.5030.43
713_L743_F0.5030.43
394_T692_T0.5020.43
312_V451_F0.5020.43
264_R297_T0.5020.43
96_D377_S0.5020.43
433_S496_P0.5020.43
107_F127_F0.5010.43
95_S99_A0.5010.43
631_A665_N0.5010.43
578_S608_N0.5010.43
311_S481_F0.5010.43
185_N383_Y0.5010.43
60_I67_R0.5010.43
803_K807_L0.5000.43
793_V798_N0.5000.43
154_F699_I0.5000.43
382_N447_D0.5000.43
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3rfzB 2 0.9116 100 0.057 Contact Map
3fipA 1 0.5278 100 0.45 Contact Map
3fcgA 2 0.0908 99.9 0.839 Contact Map
4b0mA 1 0.1489 99.9 0.852 Contact Map
3bwuD 1 0.1356 99.9 0.864 Contact Map
2xetA 1 0.0956 99.5 0.905 Contact Map
3l48A 1 0.0993 99.5 0.905 Contact Map
3e8vA 1 0.0775 94.1 0.964 Contact Map
4oq1A 1 0.1973 92.8 0.966 Contact Map
4u3sB 1 0.0932 90.1 0.968 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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