TORA - ECOLI - GREMLIN Contacts

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TORA - Trimethylamine-N-oxide reductase 1

UniProt:	P33225	Sequences: MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11814
Length:	848 (688)
Sequences:	8586 (5456)
Seq/√Len:	208.0

ECOLI - TORA TORZ YNFF DMSA YNFE NAPA BISC FDHF YDEP FDNG FDOG NARZ NARG
BACSU - NASC YOAE YYAE YJGC FDHL NARG
HALSA - DMSA
SULSO - Q97XX8 Q97ZA1 Q97V13

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
102_Y	128_R	5.861	1.00
735_I	754_A	4.655	1.00
136_D	573_R	4.488	1.00
742_R	816_E	4.366	1.00
739_D	817_K	3.911	1.00
561_R	569_E	3.760	1.00
308_E	360_R	3.420	1.00
141_E	144_R	3.371	1.00
742_R	749_Q	3.367	1.00
342_A	352_A	3.354	1.00
300_A	344_A	3.323	1.00
729_D	763_G	3.282	1.00
690_L	733_R	3.228	1.00
565_D	569_E	3.137	1.00
552_Q	555_P	3.035	1.00
304_T	308_E	3.012	1.00
137_M	523_I	2.954	1.00
313_K	317_A	2.917	1.00
728_Q	762_P	2.911	1.00
144_R	148_T	2.892	1.00
744_F	816_E	2.879	1.00
509_A	521_A	2.876	1.00
138_F	523_I	2.867	1.00
135_L	573_R	2.842	1.00
107_V	127_V	2.799	1.00
303_H	307_S	2.795	1.00
321_V	648_S	2.788	1.00
744_F	814_E	2.744	1.00
130_S	133_E	2.691	1.00
145_V	153_A	2.663	1.00
297_L	348_T	2.661	1.00
745_N	813_V	2.657	1.00
585_D	588_G	2.611	1.00
725_I	754_A	2.606	1.00
741_V	754_A	2.582	1.00
264_E	361_Q	2.574	1.00
345_E	352_A	2.572	1.00
285_K	357_G	2.571	1.00
720_K	753_G	2.557	1.00
228_W	298_Q	2.555	1.00
302_A	394_M	2.551	1.00
725_I	815_I	2.547	1.00
129_V	523_I	2.519	1.00
102_Y	559_E	2.509	1.00
311_Y	316_L	2.484	1.00
351_D	354_T	2.472	1.00
105_V	137_M	2.431	1.00
354_T	357_G	2.428	1.00
223_K	367_T	2.405	1.00
730_A	756_V	2.402	1.00
105_V	129_V	2.380	1.00
302_A	326_F	2.371	1.00
352_A	356_R	2.360	1.00
105_V	523_I	2.348	1.00
135_L	569_E	2.340	1.00
648_S	652_E	2.312	1.00
340_D	343_W	2.307	1.00
314_N	318_N	2.269	1.00
733_R	814_E	2.254	1.00
142_L	479_M	2.252	1.00
309_N	313_K	2.245	1.00
744_F	749_Q	2.235	1.00
732_A	762_P	2.209	1.00
493_Q	796_D	2.175	1.00
222_S	225_I	2.156	1.00
357_G	361_Q	2.116	1.00
137_M	141_E	2.111	1.00
737_N	756_V	2.104	1.00
138_F	508_I	2.080	1.00
128_R	559_E	2.074	1.00
735_I	741_V	2.073	1.00
221_N	401_P	2.072	1.00
723_V	765_A	2.055	1.00
145_V	479_M	2.048	1.00
723_V	741_V	2.028	1.00
569_E	573_R	2.024	1.00
129_V	137_M	1.989	1.00
752_A	767_I	1.974	1.00
723_V	767_I	1.973	1.00
63_R	78_E	1.956	1.00
224_T	361_Q	1.954	1.00
267_S	279_L	1.948	1.00
478_K	505_E	1.944	1.00
740_V	751_L	1.932	1.00
287_I	358_L	1.932	1.00
224_T	266_I	1.931	1.00
287_I	350_I	1.924	1.00
557_Q	560_A	1.923	1.00
285_K	354_T	1.903	1.00
742_R	751_L	1.896	1.00
297_L	355_I	1.887	1.00
303_H	341_A	1.871	1.00
613_D	617_N	1.844	1.00
737_N	755_V	1.833	1.00
293_T	347_L	1.825	1.00
105_V	127_V	1.823	1.00
306_Y	323_F	1.823	1.00
610_A	613_D	1.799	1.00
723_V	743_V	1.793	1.00
342_A	356_R	1.765	1.00
136_D	140_E	1.765	1.00
104_M	524_V	1.753	1.00
690_L	765_A	1.752	1.00
499_E	502_R	1.748	1.00
223_K	365_N	1.742	1.00
725_I	765_A	1.737	1.00
514_W	518_C	1.732	1.00
101_R	558_F	1.729	1.00
498_I	502_R	1.724	1.00
304_T	360_R	1.722	1.00
400_L	403_G	1.704	1.00
308_E	356_R	1.699	1.00
362_M	395_L	1.682	1.00
310_L	363_A	1.664	1.00
728_Q	731_S	1.661	1.00
481_I	510_I	1.650	1.00
143_E	147_K	1.649	1.00
569_E	572_R	1.645	1.00
285_K	361_Q	1.640	1.00
534_N	552_Q	1.639	1.00
740_V	753_G	1.638	1.00
750_V	767_I	1.637	1.00
345_E	351_D	1.632	1.00
304_T	341_A	1.617	1.00
226_V	268_I	1.617	1.00
504_L	507_V	1.616	1.00
724_F	757_S	1.613	1.00
304_T	356_R	1.600	1.00
360_R	364_A	1.595	1.00
690_L	729_D	1.595	1.00
268_I	297_L	1.590	1.00
254_L	263_I	1.587	1.00
345_E	355_I	1.586	1.00
528_T	562_N	1.585	1.00
129_V	133_E	1.580	1.00
394_M	653_I	1.579	1.00
310_L	360_R	1.574	1.00
587_M	591_K	1.569	1.00
142_L	508_I	1.566	1.00
316_L	323_F	1.563	1.00
765_A	813_V	1.563	1.00
61_A	80_D	1.562	1.00
107_V	125_R	1.561	1.00
506_T	523_I	1.561	1.00
138_F	525_L	1.556	1.00
695_V	766_R	1.552	1.00
446_S	449_I	1.547	1.00
344_A	355_I	1.547	1.00
685_S	746_A	1.545	1.00
736_R	739_D	1.539	1.00
297_L	358_L	1.535	1.00
306_Y	327_L	1.520	1.00
328_P	337_Q	1.498	1.00
64_A	71_F	1.498	1.00
149_H	478_K	1.496	1.00
320_C	653_I	1.489	1.00
296_P	347_L	1.486	1.00
140_E	144_R	1.485	1.00
307_S	356_R	1.485	1.00
104_M	128_R	1.479	1.00
305_L	311_Y	1.478	1.00
311_Y	323_F	1.460	1.00
551_K	615_W	1.460	1.00
634_A	637_E	1.450	1.00
482_F	507_V	1.444	1.00
174_A	181_G	1.440	1.00
440_S	444_G	1.435	1.00
133_E	137_M	1.425	1.00
304_T	310_L	1.425	1.00
255_K	284_V	1.418	1.00
306_Y	330_L	1.417	1.00
65_T	75_K	1.414	1.00
226_V	358_L	1.388	1.00
307_S	337_Q	1.388	1.00
708_S	711_L	1.378	1.00
137_M	506_T	1.377	1.00
690_L	814_E	1.368	1.00
224_T	358_L	1.366	1.00
509_A	518_C	1.365	1.00
285_K	358_L	1.364	1.00
103_P	131_W	1.362	1.00
143_E	146_Q	1.351	1.00
733_R	815_I	1.351	1.00
272_V	277_E	1.348	1.00
727_P	758_D	1.345	1.00
620_Y	623_F	1.343	1.00
289_V	350_I	1.342	1.00
656_K	660_D	1.339	1.00
631_R	635_F	1.334	1.00
612_D	616_N	1.332	1.00
588_G	591_K	1.332	1.00
301_L	362_M	1.327	1.00
707_E	711_L	1.322	1.00
146_Q	154_L	1.314	1.00
339_K	343_W	1.313	1.00
71_F	94_V	1.308	1.00
49_S	66_V	1.307	1.00
562_N	565_D	1.307	1.00
375_V	388_I	1.306	1.00
339_K	347_L	1.304	1.00
514_W	524_V	1.304	1.00
50_K	63_R	1.304	1.00
267_S	276_H	1.302	1.00
349_G	761_A	1.298	1.00
155_L	477_L	1.298	1.00
632_H	635_F	1.296	1.00
442_Y	446_S	1.294	1.00
726_N	762_P	1.291	1.00
313_K	327_L	1.291	1.00
270_P	286_H	1.289	1.00
512_N	529_T	1.285	1.00
305_L	363_A	1.271	1.00
343_W	346_K	1.269	1.00
218_V	221_N	1.266	1.00
306_Y	311_Y	1.264	1.00
325_Q	328_P	1.262	1.00
133_E	523_I	1.259	1.00
321_V	652_E	1.257	1.00
723_V	752_A	1.257	1.00
561_R	565_D	1.254	1.00
625_H	629_F	1.251	1.00
646_T	652_E	1.250	1.00
253_Q	256_A	1.241	1.00
48_I	63_R	1.241	1.00
314_N	317_A	1.239	1.00
304_T	307_S	1.239	1.00
139_Y	573_R	1.238	1.00
722_P	755_V	1.229	1.00
339_K	344_A	1.221	1.00
583_G	588_G	1.214	1.00
266_I	358_L	1.211	1.00
287_I	354_T	1.209	1.00
572_R	577_E	1.208	1.00
64_A	74_A	1.208	1.00
591_K	594_W	1.207	1.00
154_L	479_M	1.205	1.00
70_R	95_H	1.204	1.00
198_I	385_A	1.203	1.00
135_L	561_R	1.202	1.00
301_L	359_A	1.199	1.00
106_R	126_F	1.198	1.00
298_Q	388_I	1.198	1.00
303_H	337_Q	1.194	1.00
322_G	325_Q	1.189	1.00
496_R	499_E	1.187	1.00
565_D	572_R	1.185	1.00
310_L	364_A	1.181	1.00
510_I	566_I	1.181	1.00
51_E	64_A	1.180	1.00
146_Q	151_P	1.177	1.00
441_D	445_Y	1.177	1.00
197_V	802_L	1.175	1.00
301_L	305_L	1.175	1.00
63_R	75_K	1.171	1.00
633_Q	637_E	1.171	1.00
687_K	814_E	1.170	1.00
156_T	174_A	1.169	1.00
63_R	77_F	1.168	1.00
493_Q	496_R	1.165	1.00
293_T	348_T	1.164	1.00
153_A	478_K	1.163	1.00
223_K	366_R	1.162	1.00
687_K	746_A	1.156	1.00
225_I	263_I	1.155	1.00
289_V	293_T	1.153	1.00
767_I	790_P	1.153	1.00
145_V	505_E	1.152	1.00
227_L	230_S	1.151	1.00
107_V	123_D	1.149	1.00
528_T	560_A	1.148	1.00
442_Y	445_Y	1.145	1.00
304_T	355_I	1.144	1.00
397_Q	403_G	1.144	1.00
305_L	395_L	1.142	1.00
743_V	767_I	1.141	1.00
723_V	815_I	1.138	1.00
724_F	755_V	1.138	1.00
765_A	815_I	1.128	1.00
226_V	301_L	1.128	1.00
757_S	760_Y	1.127	1.00
316_L	653_I	1.121	1.00
704_Q	707_E	1.116	1.00
344_A	348_T	1.113	1.00
301_L	358_L	1.112	1.00
277_E	759_R	1.106	1.00
50_K	77_F	1.104	1.00
48_I	65_T	1.103	1.00
223_K	261_G	1.101	1.00
92_D	710_T	1.099	1.00
224_T	365_N	1.098	1.00
704_Q	708_S	1.086	1.00
350_I	355_I	1.085	1.00
510_I	527_A	1.083	1.00
692_L	813_V	1.081	1.00
633_Q	636_R	1.080	1.00
150_G	153_A	1.079	1.00
338_P	343_W	1.077	1.00
479_M	508_I	1.072	1.00
742_R	818_Y	1.070	1.00
631_R	636_R	1.070	1.00
688_Y	814_E	1.064	1.00
345_E	348_T	1.064	1.00
445_Y	448_T	1.063	1.00
94_V	554_V	1.061	1.00
549_A	615_W	1.060	1.00
142_L	574_F	1.059	1.00
101_R	128_R	1.059	1.00
145_V	506_T	1.054	1.00
172_M	175_K	1.050	1.00
323_F	394_M	1.050	1.00
483_A	567_F	1.049	1.00
127_V	133_E	1.046	1.00
590_L	594_W	1.046	1.00
219_L	368_Q	1.046	1.00
138_F	506_T	1.042	1.00
80_D	83_P	1.042	1.00
300_A	355_I	1.036	1.00
482_F	517_T	1.030	1.00
303_H	340_D	1.029	1.00
225_I	251_Y	1.027	1.00
326_F	394_M	1.024	1.00
135_L	565_D	1.024	1.00
525_L	566_I	1.017	1.00
126_F	524_V	1.016	1.00
228_W	268_I	1.005	1.00
591_K	612_D	1.005	1.00
131_W	525_L	1.004	1.00
468_N	477_L	1.003	1.00
268_I	287_I	1.003	1.00
298_Q	387_M	1.002	1.00
591_K	595_Q	0.998	1.00
101_R	557_Q	0.998	1.00
473_K	496_R	0.998	1.00
323_F	327_L	0.998	1.00
301_L	391_L	0.995	1.00
100_I	524_V	0.994	1.00
724_F	759_R	0.993	1.00
341_A	356_R	0.993	1.00
345_E	350_I	0.992	1.00
534_N	587_M	0.988	1.00
693_Q	764_V	0.988	1.00
689_P	814_E	0.986	1.00
499_E	503_K	0.984	1.00
61_A	77_F	0.984	1.00
479_M	506_T	0.981	1.00
300_A	304_T	0.978	1.00
152_S	182_N	0.976	1.00
131_W	566_I	0.976	1.00
141_E	145_V	0.973	1.00
46_A	67_K	0.971	1.00
449_I	452_A	0.969	1.00
706_C	711_L	0.967	1.00
527_A	566_I	0.965	1.00
132_D	573_R	0.963	1.00
264_E	284_V	0.962	1.00
357_G	360_R	0.962	1.00
266_I	361_Q	0.961	1.00
142_L	481_I	0.961	1.00
690_L	815_I	0.959	1.00
725_I	735_I	0.957	1.00
202_V	386_W	0.956	1.00
138_F	570_L	0.954	0.99
290_N	761_A	0.953	0.99
531_F	553_V	0.952	0.99
135_L	570_L	0.951	0.99
345_E	353_E	0.950	0.99
743_V	813_V	0.949	0.99
321_V	650_L	0.948	0.99
304_T	359_A	0.947	0.99
65_T	73_A	0.947	0.99
443_K	446_S	0.945	0.99
295_V	384_W	0.944	0.99
320_C	393_A	0.944	0.99
688_Y	745_N	0.944	0.99
446_S	450_P	0.943	0.99
268_I	358_L	0.943	0.99
629_F	632_H	0.942	0.99
311_Y	394_M	0.941	0.99
255_K	278_Y	0.940	0.99
312_D	400_L	0.940	0.99
518_C	524_V	0.940	0.99
587_M	611_F	0.938	0.99
390_V	653_I	0.937	0.99
173_L	176_A	0.937	0.99
481_I	570_L	0.937	0.99
121_R	124_N	0.936	0.99
453_R	456_D	0.935	0.99
534_N	549_A	0.935	0.99
264_E	285_K	0.934	0.99
356_R	360_R	0.929	0.99
305_L	391_L	0.927	0.99
64_A	531_F	0.923	0.99
488_F	494_I	0.922	0.99
353_E	356_R	0.921	0.99
340_D	344_A	0.919	0.99
299_L	339_K	0.916	0.99
67_K	72_V	0.916	0.99
291_P	764_V	0.916	0.99
685_S	812_L	0.915	0.99
326_F	330_L	0.912	0.99
324_E	327_L	0.912	0.99
630_V	633_Q	0.911	0.99
289_V	297_L	0.911	0.99
604_R	607_H	0.909	0.99
268_I	289_V	0.906	0.99
488_F	498_I	0.906	0.99
728_Q	758_D	0.906	0.99
158_S	184_V	0.905	0.99
441_D	444_G	0.904	0.99
360_R	363_A	0.901	0.99
480_C	504_L	0.901	0.99
451_I	454_F	0.899	0.99
225_I	254_L	0.898	0.99
362_M	369_I	0.898	0.99
227_L	265_V	0.895	0.99
272_V	758_D	0.893	0.99
725_I	730_A	0.893	0.99
272_V	759_R	0.893	0.99
528_T	556_P	0.893	0.99
353_E	357_G	0.891	0.99
486_N	703_S	0.890	0.99
304_T	352_A	0.889	0.99
750_V	793_L	0.888	0.99
56_G	60_G	0.887	0.99
470_K	496_R	0.886	0.99
64_A	553_V	0.882	0.99
343_W	347_L	0.880	0.99
631_R	634_A	0.879	0.99
224_T	264_E	0.879	0.99
198_I	389_V	0.879	0.99
393_A	651_I	0.878	0.99
69_G	555_P	0.874	0.99
48_I	75_K	0.871	0.99
647_P	652_E	0.867	0.99
266_I	285_K	0.860	0.99
361_Q	365_N	0.860	0.99
684_G	812_L	0.859	0.99
302_A	330_L	0.859	0.99
84_S	253_Q	0.858	0.99
515_T	518_C	0.858	0.99
632_H	636_R	0.857	0.99
534_N	586_E	0.856	0.99
350_I	354_T	0.856	0.99
464_V	467_W	0.853	0.99
726_N	756_V	0.853	0.99
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352_A	355_I	0.852	0.99
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727_P	731_S	0.851	0.99
270_P	288_A	0.850	0.99
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747_R	811_T	0.849	0.99
547_I	609_P	0.847	0.99
367_T	403_G	0.846	0.99
300_A	346_K	0.846	0.99
279_L	284_V	0.846	0.99
232_L	251_Y	0.840	0.99
725_I	741_V	0.838	0.99
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761_A	764_V	0.834	0.99
746_A	812_L	0.830	0.99
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473_K	503_K	0.827	0.99
554_V	557_Q	0.826	0.99
307_S	341_A	0.825	0.99
138_F	141_E	0.822	0.98
142_L	146_Q	0.821	0.98
620_Y	624_D	0.820	0.98
255_K	265_V	0.819	0.98
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218_V	402_G	0.819	0.98
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178_A	181_G	0.817	0.98
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747_R	794_T	0.816	0.98
102_Y	130_S	0.815	0.98
287_I	297_L	0.814	0.98
341_A	344_A	0.812	0.98
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104_M	514_W	0.808	0.98
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252_A	255_K	0.807	0.98
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502_R	520_F	0.806	0.98
297_L	301_L	0.805	0.98
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316_L	394_M	0.802	0.98
629_F	633_Q	0.801	0.98
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354_T	361_Q	0.801	0.98
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685_S	689_P	0.799	0.98
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721_E	771_A	0.794	0.98
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637_E	642_E	0.791	0.98
155_L	468_N	0.791	0.98
129_V	134_A	0.791	0.98
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725_I	756_V	0.775	0.98
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272_V	288_A	0.771	0.98
226_V	369_I	0.770	0.98
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743_V	815_I	0.760	0.97
369_I	388_I	0.760	0.97
747_R	812_L	0.757	0.97
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529_T	557_Q	0.738	0.97
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494_I	498_I	0.547	0.87
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382_E	800_S	0.547	0.87
386_W	654_Y	0.547	0.87
607_H	617_N	0.546	0.87
232_L	275_T	0.546	0.87
290_N	691_H	0.546	0.87
226_V	391_L	0.545	0.87
271_V	695_V	0.544	0.86
604_R	609_P	0.544	0.86
145_V	154_L	0.543	0.86
655_S	658_I	0.543	0.86
468_N	475_P	0.543	0.86
380_H	384_W	0.543	0.86
169_A	582_E	0.543	0.86
288_A	354_T	0.542	0.86
74_A	77_F	0.542	0.86
656_K	659_A	0.541	0.86
358_L	361_Q	0.541	0.86
253_Q	261_G	0.541	0.86
590_L	597_G	0.541	0.86
311_Y	327_L	0.540	0.86
497_I	501_L	0.540	0.86
193_G	805_A	0.540	0.86
696_H	769_E	0.540	0.86
573_R	576_R	0.539	0.86
190_Y	491_H	0.539	0.86
371_A	405_F	0.539	0.86
476_P	503_K	0.539	0.86
672_W	675_K	0.538	0.86
745_N	793_L	0.538	0.86
102_Y	129_V	0.538	0.86
732_A	763_G	0.538	0.86
629_F	635_F	0.538	0.86
173_L	178_A	0.537	0.86
156_T	177_I	0.537	0.86
399_G	404_G	0.537	0.86
586_E	597_G	0.537	0.86
312_D	315_F	0.536	0.86
516_S	519_R	0.536	0.86
337_Q	340_D	0.536	0.86
690_L	726_N	0.536	0.86
630_V	634_A	0.536	0.86
297_L	345_E	0.536	0.86
173_L	177_I	0.535	0.86
215_W	621_V	0.535	0.86
691_H	810_T	0.534	0.85
645_G	650_L	0.534	0.85
344_A	347_L	0.533	0.85
151_P	180_H	0.532	0.85
468_N	480_C	0.532	0.85
480_C	488_F	0.532	0.85
267_S	275_T	0.532	0.85
53_I	89_G	0.531	0.85
582_E	589_W	0.531	0.85
176_A	181_G	0.530	0.85
354_T	358_L	0.530	0.85
739_D	818_Y	0.530	0.85
626_P	630_V	0.530	0.85
173_L	570_L	0.530	0.85
577_E	580_F	0.529	0.85
230_S	372_G	0.529	0.85
590_L	596_E	0.527	0.85
252_A	278_Y	0.527	0.85
234_K	698_D	0.527	0.85
722_P	753_G	0.526	0.85
700_R	705_L	0.525	0.84
448_T	452_A	0.525	0.84
709_E	713_Q	0.525	0.84
96_N	707_E	0.524	0.84
146_Q	149_H	0.523	0.84
729_D	733_R	0.523	0.84
303_H	343_W	0.522	0.84
425_S	432_S	0.522	0.84
303_H	306_Y	0.522	0.84
444_G	449_I	0.521	0.84
51_E	62_I	0.521	0.84
423_I	428_S	0.520	0.84
329_Y	338_P	0.520	0.84
228_W	391_L	0.519	0.84
124_N	127_V	0.518	0.84
609_P	620_Y	0.518	0.84
270_P	693_Q	0.518	0.84
564_F	568_R	0.517	0.84
611_F	619_E	0.517	0.84
290_N	346_K	0.517	0.84
121_R	522_D	0.517	0.84
228_W	297_L	0.517	0.84
480_C	501_L	0.516	0.83
232_L	408_G	0.516	0.83
603_G	606_V	0.516	0.83
98_A	710_T	0.515	0.83
697_P	718_A	0.515	0.83
100_I	514_W	0.515	0.83
66_V	72_V	0.514	0.83
427_F	431_T	0.514	0.83
391_L	395_L	0.512	0.83
629_F	634_A	0.512	0.83
373_W	376_Q	0.512	0.83
132_D	136_D	0.512	0.83
228_W	375_V	0.512	0.83
501_L	507_V	0.512	0.83
157_A	485_T	0.512	0.83
293_T	344_A	0.511	0.83
492_Q	808_A	0.511	0.83
409_W	413_G	0.510	0.83
195_A	371_A	0.510	0.83
295_V	298_Q	0.510	0.83
443_K	452_A	0.509	0.83
445_Y	449_I	0.509	0.83
733_R	765_A	0.509	0.83
586_E	592_R	0.508	0.83
141_E	523_I	0.507	0.82
301_L	304_T	0.507	0.82
432_S	435_P	0.507	0.82
299_L	330_L	0.506	0.82
70_R	557_Q	0.506	0.82
69_G	95_H	0.506	0.82
470_K	473_K	0.506	0.82
418_G	422_V	0.506	0.82
425_S	429_G	0.506	0.82
293_T	296_P	0.505	0.82
493_Q	499_E	0.504	0.82
234_K	724_F	0.504	0.82
568_R	581_T	0.504	0.82
144_R	505_E	0.503	0.82
176_A	180_H	0.503	0.82
303_H	344_A	0.503	0.82
182_N	186_T	0.502	0.82
512_N	527_A	0.502	0.82
421_G	425_S	0.502	0.82
325_Q	654_Y	0.501	0.82
745_N	812_L	0.501	0.82
159_G	164_G	0.501	0.82
645_G	649_G	0.501	0.82
235_N	372_G	0.500	0.82
129_V	506_T	0.500	0.82
133_E	506_T	0.500	0.82

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1kqfA	3	0.8443	100	0.28	Contact Map
2vpzA	1	0.8467	100	0.282	Contact Map
2ivfA	1	0.8408	100	0.291	Contact Map
1tmoA	1	0.9116	100	0.302	Contact Map
1q16A	2	0.9399	100	0.303	Contact Map
2e7zA	1	0.8208	100	0.313	Contact Map
1h0hA	1	0.8491	100	0.315	Contact Map
2iv2X	1	0.8019	100	0.326	Contact Map
1eu1A	1	0.8927	100	0.326	Contact Map
2napA	1	0.809	100	0.33	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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