AIDB - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

AIDB - Putative acyl-CoA dehydrogenase AidB

UniProt:	P33224	Sequences: MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTRGGVRLSEQIQNDLLLRATGGVCV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11811
Length:	541 (484)
Sequences:	5419 (3165)
Seq/√Len:	143.8

ECOLI - AIDB CAIA YDIO
BACSU - FADE ACDB ACDA
HALSA - Q9HS75 Q9HRI6 Q9HRB3
SULSO - Q97XW3 Q97V73

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
159_P	163_D	5.238	1.00
168_H	177_G	4.839	1.00
171_P	177_G	4.481	1.00
236_S	280_L	4.277	1.00
203_L	209_R	4.276	1.00
75_Q	86_P	3.956	1.00
286_E	289_R	3.567	1.00
159_P	162_S	3.499	1.00
407_E	412_P	3.382	1.00
231_T	284_E	3.142	1.00
211_V	275_D	3.056	1.00
32_T	35_G	2.924	1.00
396_A	411_L	2.913	1.00
157_T	161_L	2.862	1.00
70_L	74_A	2.810	1.00
93_Q	97_T	2.758	1.00
203_L	207_S	2.758	1.00
330_P	333_Q	2.734	1.00
283_L	286_E	2.719	1.00
313_A	393_V	2.511	1.00
390_M	422_S	2.491	1.00
59_G	63_N	2.466	1.00
161_L	239_F	2.427	1.00
106_E	154_Q	2.415	1.00
467_V	470_L	2.410	1.00
240_V	278_G	2.357	1.00
358_L	381_A	2.349	1.00
219_V	222_S	2.304	1.00
274_Q	277_I	2.303	1.00
156_W	293_K	2.297	1.00
90_L	93_Q	2.280	1.00
319_Y	323_Q	2.262	1.00
158_T	161_L	2.222	1.00
387_K	428_G	2.184	1.00
470_L	478_A	2.173	1.00
243_F	249_R	2.147	1.00
201_E	211_V	2.090	1.00
79_L	257_L	2.014	1.00
351_Q	385_I	2.012	1.00
57_E	60_R	1.991	1.00
221_Q	254_L	1.960	1.00
216_F	406_C	1.959	1.00
207_S	277_I	1.949	1.00
209_R	277_I	1.949	1.00
321_A	399_V	1.945	1.00
60_R	64_V	1.942	1.00
89_H	93_Q	1.938	1.00
253_R	274_Q	1.931	1.00
251_A	276_A	1.929	1.00
191_S	430_I	1.927	1.00
360_R	364_R	1.921	1.00
183_G	273_F	1.899	1.00
437_R	442_Q	1.894	1.00
463_F	467_V	1.884	1.00
196_N	230_Q	1.875	1.00
202_R	284_E	1.866	1.00
438_V	442_Q	1.863	1.00
255_E	272_E	1.856	1.00
209_R	275_D	1.845	1.00
325_H	330_P	1.842	1.00
343_R	395_E	1.825	1.00
354_L	381_A	1.817	1.00
466_A	470_L	1.798	1.00
185_T	216_F	1.797	1.00
390_M	415_Y	1.786	1.00
439_L	442_Q	1.770	1.00
310_M	392_F	1.765	1.00
318_I	345_A	1.734	1.00
137_M	140_A	1.724	1.00
350_G	508_Q	1.713	1.00
193_V	288_I	1.678	1.00
74_A	407_E	1.667	1.00
403_I	409_S	1.663	1.00
251_A	275_D	1.662	1.00
348_L	392_F	1.659	1.00
107_E	113_A	1.651	1.00
253_R	272_E	1.647	1.00
449_L	453_F	1.646	1.00
199_R	211_V	1.638	1.00
227_V	273_F	1.629	1.00
344_M	392_F	1.626	1.00
196_N	235_L	1.622	1.00
208_Y	231_T	1.618	1.00
263_N	420_V	1.616	1.00
394_A	415_Y	1.600	1.00
201_E	232_A	1.586	1.00
65_N	94_A	1.582	1.00
454_V	471_Q	1.577	1.00
51_G	120_R	1.570	1.00
437_R	444_G	1.559	1.00
313_A	396_A	1.555	1.00
415_Y	418_M	1.555	1.00
312_R	316_L	1.550	1.00
210_L	238_F	1.549	1.00
307_H	348_L	1.543	1.00
24_D	52_T	1.542	1.00
463_F	466_A	1.537	1.00
437_R	441_K	1.528	1.00
438_V	441_K	1.526	1.00
163_D	167_S	1.520	1.00
340_V	395_E	1.506	1.00
130_G	311_R	1.497	1.00
314_F	348_L	1.487	1.00
164_R	168_H	1.487	1.00
252_I	271_V	1.474	1.00
162_S	166_D	1.466	1.00
368_A	371_A	1.465	1.00
391_P	394_A	1.457	1.00
203_L	206_G	1.453	1.00
168_H	178_L	1.451	1.00
466_A	469_R	1.433	1.00
244_L	277_I	1.433	1.00
467_V	478_A	1.431	1.00
337_M	340_V	1.430	1.00
481_L	484_E	1.427	1.00
153_F	169_L	1.426	1.00
329_N	333_Q	1.425	1.00
390_M	394_A	1.417	1.00
394_A	422_S	1.416	1.00
437_R	440_N	1.410	1.00
306_S	386_C	1.408	1.00
153_F	239_F	1.402	1.00
160_L	164_R	1.400	1.00
438_V	444_G	1.395	1.00
466_A	478_A	1.392	1.00
314_F	318_I	1.389	1.00
310_M	348_L	1.389	1.00
213_H	270_E	1.387	1.00
303_A	381_A	1.386	1.00
73_D	77_R	1.385	1.00
168_H	171_P	1.370	1.00
134_P	137_M	1.368	1.00
393_V	414_L	1.365	1.00
366_A	371_A	1.363	1.00
138_T	267_A	1.360	1.00
336_L	429_N	1.357	1.00
213_H	272_E	1.354	1.00
391_P	395_E	1.345	1.00
304_L	355_L	1.345	1.00
207_S	279_W	1.338	1.00
71_R	75_Q	1.333	1.00
23_S	356_F	1.332	1.00
259_D	264_R	1.323	1.00
208_Y	238_F	1.315	1.00
229_A	238_F	1.310	1.00
47_G	50_L	1.298	1.00
263_N	417_E	1.293	1.00
309_M	418_M	1.289	1.00
344_M	396_A	1.283	1.00
26_A	30_A	1.278	1.00
245_P	279_W	1.275	1.00
316_L	414_L	1.272	1.00
469_R	473_Q	1.271	1.00
187_K	213_H	1.271	1.00
105_W	170_L	1.268	1.00
183_G	217_F	1.267	1.00
322_H	332_I	1.263	1.00
456_V	460_D	1.263	1.00
312_R	414_L	1.261	1.00
48_Q	52_T	1.260	1.00
470_L	477_P	1.258	1.00
383_F	428_G	1.251	1.00
441_K	444_G	1.249	1.00
28_C	52_T	1.246	1.00
462_Y	466_A	1.239	1.00
280_L	284_E	1.236	1.00
316_L	400_L	1.236	1.00
142_T	169_L	1.236	1.00
46_I	50_L	1.234	1.00
204_E	207_S	1.231	1.00
331_L	337_M	1.228	1.00
437_R	443_A	1.228	1.00
307_H	351_Q	1.225	1.00
226_L	237_C	1.224	1.00
261_L	412_P	1.219	1.00
409_S	412_P	1.212	1.00
321_A	341_L	1.204	1.00
24_D	28_C	1.201	1.00
474_L	477_P	1.200	1.00
367_D	371_A	1.193	1.00
239_F	281_L	1.190	1.00
78_R	83_R	1.189	1.00
58_L	124_H	1.183	1.00
30_A	518_R	1.174	1.00
318_I	322_H	1.168	1.00
473_Q	476_K	1.160	1.00
233_G	284_E	1.159	1.00
448_L	452_A	1.159	1.00
137_M	218_S	1.154	1.00
41_D	44_A	1.152	0.99
93_Q	96_C	1.151	0.99
438_V	443_A	1.142	0.99
109_A	162_S	1.142	0.99
258_K	268_S	1.140	0.99
347_Q	388_R	1.137	0.99
28_C	34_E	1.137	0.99
133_C	137_M	1.136	0.99
200_A	238_F	1.133	0.99
84_F	223_D	1.132	0.99
244_L	249_R	1.128	0.99
117_R	120_R	1.128	0.99
259_D	407_E	1.128	0.99
317_A	399_V	1.128	0.99
451_E	455_E	1.127	0.99
450_S	454_V	1.125	0.99
251_A	274_Q	1.118	0.99
179_L	222_S	1.115	0.99
488_Q	491_L	1.108	0.99
128_E	136_T	1.107	0.99
357_R	361_A	1.097	0.99
389_G	393_V	1.097	0.99
69_L	413_R	1.095	0.99
210_L	278_G	1.091	0.99
311_R	315_S	1.085	0.99
400_L	411_L	1.081	0.99
134_P	138_T	1.071	0.99
201_E	209_R	1.070	0.99
61_L	98_N	1.069	0.99
464_D	468_R	1.065	0.99
211_V	251_A	1.059	0.99
449_L	507_A	1.051	0.99
366_A	369_K	1.047	0.99
226_L	294_M	1.045	0.99
28_C	48_Q	1.042	0.99
71_R	87_A	1.041	0.99
26_A	31_V	1.039	0.99
461_R	467_V	1.027	0.99
201_E	275_D	1.024	0.99
94_A	97_T	1.023	0.99
481_L	485_I	1.021	0.99
256_R	270_E	1.021	0.99
365_R	368_A	1.018	0.99
126_Q	130_G	1.008	0.99
394_A	419_P	1.000	0.99
506_M	509_A	0.999	0.99
477_P	506_M	0.994	0.99
365_R	371_A	0.991	0.98
61_L	65_N	0.991	0.98
397_M	415_Y	0.989	0.98
224_A	239_F	0.988	0.98
387_K	501_Y	0.986	0.98
225_H	242_R	0.985	0.98
80_D	83_R	0.984	0.98
138_T	141_A	0.978	0.98
71_R	265_S	0.978	0.98
166_D	171_P	0.976	0.98
479_E	482_G	0.973	0.98
164_R	245_P	0.972	0.98
329_N	334_Q	0.966	0.98
138_T	142_T	0.966	0.98
123_L	356_F	0.965	0.98
261_L	407_E	0.964	0.98
456_V	510_W	0.964	0.98
372_L	448_L	0.964	0.98
365_R	369_K	0.957	0.98
71_R	86_P	0.955	0.98
84_F	88_W	0.955	0.98
149_L	169_L	0.955	0.98
422_S	428_G	0.955	0.98
200_A	229_A	0.951	0.98
191_S	326_V	0.950	0.98
306_S	389_G	0.947	0.98
218_S	266_N	0.945	0.98
244_L	248_Q	0.942	0.98
185_T	215_W	0.940	0.98
245_P	248_Q	0.938	0.98
507_A	511_C	0.936	0.98
373_W	377_F	0.935	0.98
254_L	271_V	0.932	0.98
512_Q	515_L	0.932	0.98
461_R	466_A	0.932	0.98
211_V	274_Q	0.930	0.98
394_A	397_M	0.929	0.98
483_R	486_T	0.929	0.98
160_L	165_Y	0.928	0.98
362_W	374_A	0.925	0.98
31_V	356_F	0.923	0.98
137_M	142_T	0.923	0.98
317_A	344_M	0.921	0.98
445_V	448_L	0.920	0.98
68_E	71_R	0.919	0.98
152_P	226_L	0.919	0.98
452_A	455_E	0.918	0.97
303_A	355_L	0.917	0.97
226_L	281_L	0.915	0.97
105_W	150_P	0.913	0.97
117_R	131_S	0.911	0.97
343_R	347_Q	0.909	0.97
467_V	474_L	0.908	0.97
361_A	373_W	0.908	0.97
501_Y	505_P	0.908	0.97
231_T	280_L	0.906	0.97
376_L	449_L	0.905	0.97
447_D	451_E	0.902	0.97
383_F	500_K	0.902	0.97
217_F	271_V	0.901	0.97
47_G	51_G	0.900	0.97
480_E	484_E	0.899	0.97
161_L	281_L	0.897	0.97
479_E	483_R	0.896	0.97
251_A	277_I	0.895	0.97
389_G	421_N	0.892	0.97
470_L	473_Q	0.892	0.97
384_V	388_R	0.891	0.97
160_L	163_D	0.889	0.97
393_V	411_L	0.889	0.97
255_E	270_E	0.889	0.97
191_S	327_F	0.887	0.97
96_C	101_H	0.886	0.97
337_M	399_V	0.886	0.97
189_G	196_N	0.886	0.97
454_V	457_K	0.884	0.97
468_R	472_Q	0.879	0.97
216_F	320_H	0.879	0.97
165_Y	171_P	0.879	0.97
86_P	90_L	0.877	0.97
390_M	418_M	0.876	0.97
456_V	459_Q	0.876	0.97
351_Q	388_R	0.874	0.97
372_L	442_Q	0.873	0.97
316_L	410_E	0.873	0.97
472_Q	476_K	0.872	0.97
158_T	281_L	0.872	0.97
320_H	403_I	0.867	0.96
122_M	359_A	0.867	0.96
216_F	403_I	0.866	0.96
46_I	51_G	0.866	0.96
81_D	249_R	0.861	0.96
357_R	452_A	0.860	0.96
340_V	429_N	0.858	0.96
397_M	411_L	0.856	0.96
388_R	391_P	0.855	0.96
134_P	265_S	0.854	0.96
84_F	89_H	0.850	0.96
23_S	127_V	0.850	0.96
57_E	61_L	0.847	0.96
72_Y	132_L	0.847	0.96
230_Q	235_L	0.844	0.96
139_F	142_T	0.842	0.96
94_A	98_N	0.842	0.96
480_E	483_R	0.841	0.96
212_G	271_V	0.840	0.96
111_S	114_F	0.835	0.96
357_R	511_C	0.829	0.95
244_L	279_W	0.827	0.95
117_R	123_L	0.826	0.95
132_L	138_T	0.820	0.95
53_A	57_E	0.818	0.95
104_A	121_F	0.813	0.95
456_V	517_T	0.812	0.95
130_G	134_P	0.811	0.95
165_Y	239_F	0.809	0.95
167_S	171_P	0.804	0.95
32_T	40_S	0.804	0.95
161_L	279_W	0.803	0.95
353_A	515_L	0.803	0.95
311_R	352_T	0.803	0.95
314_F	392_F	0.800	0.94
122_M	304_L	0.799	0.94
497_Q	501_Y	0.798	0.94
127_V	130_G	0.798	0.94
403_I	406_C	0.797	0.94
42_F	45_S	0.795	0.94
466_A	471_Q	0.794	0.94
162_S	165_Y	0.793	0.94
502_A	507_A	0.792	0.94
461_R	464_D	0.791	0.94
106_E	172_G	0.791	0.94
257_L	267_A	0.789	0.94
383_F	387_K	0.788	0.94
471_Q	475_R	0.786	0.94
65_N	68_E	0.786	0.94
467_V	471_Q	0.784	0.94
29_E	518_R	0.783	0.94
165_Y	224_A	0.780	0.94
344_M	348_L	0.779	0.94
133_C	136_T	0.776	0.94
70_L	83_R	0.776	0.94
511_C	515_L	0.775	0.93
161_L	165_Y	0.773	0.93
454_V	478_A	0.772	0.93
307_H	355_L	0.771	0.93
457_K	468_R	0.771	0.93
286_E	290_L	0.771	0.93
331_L	427_S	0.771	0.93
68_E	87_A	0.769	0.93
59_G	64_V	0.767	0.93
54_E	58_L	0.766	0.93
497_Q	500_K	0.766	0.93
451_E	454_V	0.765	0.93
433_L	496_A	0.762	0.93
139_F	143_P	0.761	0.93
38_W	41_D	0.761	0.93
393_V	415_Y	0.760	0.93
473_Q	477_P	0.758	0.93
310_M	389_G	0.758	0.93
464_D	473_Q	0.758	0.93
161_L	164_R	0.757	0.93
106_E	109_A	0.757	0.93
380_A	504_P	0.757	0.93
205_D	277_I	0.756	0.93
123_L	126_Q	0.756	0.93
62_A	128_E	0.756	0.93
136_T	139_F	0.756	0.93
210_L	273_F	0.755	0.93
283_L	290_L	0.755	0.93
317_A	396_A	0.753	0.92
82_V	87_A	0.752	0.92
129_A	136_T	0.750	0.92
82_V	88_W	0.749	0.92
466_A	474_L	0.748	0.92
158_T	162_S	0.747	0.92
202_R	232_A	0.746	0.92
133_C	138_T	0.744	0.92
133_C	421_N	0.744	0.92
460_D	517_T	0.742	0.92
347_Q	351_Q	0.741	0.92
445_V	449_L	0.736	0.92
439_L	443_A	0.736	0.92
451_E	472_Q	0.735	0.92
479_E	486_T	0.733	0.91
467_V	473_Q	0.732	0.91
260_K	402_G	0.732	0.91
484_E	488_Q	0.730	0.91
55_S	58_L	0.730	0.91
25_G	29_E	0.730	0.91
76_G	84_F	0.730	0.91
372_L	445_V	0.729	0.91
474_L	478_A	0.729	0.91
165_Y	245_P	0.728	0.91
400_L	409_S	0.727	0.91
376_L	380_A	0.724	0.91
335_P	493_G	0.718	0.91
477_P	503_S	0.718	0.91
447_D	450_S	0.718	0.91
231_T	236_S	0.717	0.91
193_V	196_N	0.716	0.90
309_M	389_G	0.713	0.90
40_S	44_A	0.712	0.90
473_Q	478_A	0.712	0.90
225_H	252_I	0.710	0.90
23_S	26_A	0.710	0.90
85_H	88_W	0.710	0.90
137_M	141_A	0.709	0.90
446_Y	450_S	0.708	0.90
235_L	288_I	0.707	0.90
464_D	471_Q	0.706	0.90
467_V	513_V	0.705	0.90
406_C	410_E	0.704	0.90
434_D	438_V	0.703	0.90
202_R	205_D	0.699	0.89
469_R	478_A	0.699	0.89
182_M	294_M	0.699	0.89
26_A	29_E	0.697	0.89
109_A	113_A	0.696	0.89
231_T	285_G	0.695	0.89
481_L	499_L	0.693	0.89
466_A	476_K	0.692	0.89
262_G	417_E	0.692	0.89
209_R	244_L	0.691	0.89
458_G	472_Q	0.690	0.89
357_R	373_W	0.688	0.89
442_Q	445_V	0.687	0.89
480_E	487_H	0.687	0.89
50_L	55_S	0.686	0.89
261_L	415_Y	0.686	0.89
471_Q	476_K	0.686	0.89
28_C	32_T	0.684	0.88
230_Q	234_G	0.684	0.88
295_G	298_T	0.682	0.88
310_M	393_V	0.682	0.88
463_F	469_R	0.681	0.88
379_P	434_D	0.680	0.88
77_R	257_L	0.680	0.88
432_C	496_A	0.679	0.88
494_C	498_M	0.678	0.88
288_I	292_L	0.677	0.88
419_P	422_S	0.674	0.88
108_D	163_D	0.674	0.88
103_L	112_G	0.671	0.87
313_A	414_L	0.671	0.87
465_R	468_R	0.669	0.87
208_Y	280_L	0.669	0.87
300_F	381_A	0.668	0.87
454_V	475_R	0.667	0.87
92_M	101_H	0.666	0.87
127_V	131_S	0.666	0.87
252_I	276_A	0.665	0.87
439_L	444_G	0.662	0.87
351_Q	392_F	0.662	0.87
509_A	516_D	0.657	0.86
72_Y	265_S	0.657	0.86
454_V	464_D	0.655	0.86
92_M	96_C	0.655	0.86
156_W	290_L	0.654	0.86
460_D	513_V	0.653	0.86
458_G	461_R	0.651	0.86
380_A	507_A	0.650	0.86
312_R	410_E	0.649	0.86
95_L	135_I	0.647	0.85
376_L	446_Y	0.647	0.85
509_A	513_V	0.646	0.85
36_A	39_D	0.646	0.85
83_R	86_P	0.644	0.85
29_E	32_T	0.643	0.85
24_D	32_T	0.643	0.85
464_D	467_V	0.642	0.85
307_H	385_I	0.641	0.85
454_V	458_G	0.640	0.85
165_Y	279_W	0.639	0.85
117_R	126_Q	0.639	0.85
314_F	345_A	0.637	0.85
354_L	511_C	0.636	0.84
122_M	126_Q	0.636	0.84
60_R	65_N	0.635	0.84
464_D	476_K	0.634	0.84
489_L	493_G	0.632	0.84
453_F	456_V	0.630	0.84
277_I	280_L	0.629	0.84
95_L	98_N	0.628	0.84
33_R	51_G	0.627	0.84
485_I	488_Q	0.626	0.84
183_G	227_V	0.625	0.83
87_A	90_L	0.625	0.83
126_Q	352_T	0.624	0.83
490_F	493_G	0.624	0.83
199_R	232_A	0.624	0.83
483_R	488_Q	0.623	0.83
164_R	279_W	0.622	0.83
482_G	486_T	0.621	0.83
502_A	505_P	0.620	0.83
446_Y	449_L	0.618	0.83
430_I	433_L	0.618	0.83
30_A	514_M	0.618	0.83
216_F	258_K	0.616	0.83
458_G	464_D	0.616	0.83
140_A	301_D	0.614	0.82
484_E	491_L	0.611	0.82
202_R	207_S	0.611	0.82
237_C	290_L	0.610	0.82
165_Y	168_H	0.609	0.82
45_S	107_E	0.609	0.82
258_K	266_N	0.609	0.82
450_S	453_F	0.608	0.82
402_G	425_E	0.608	0.82
461_R	473_Q	0.607	0.82
35_G	39_D	0.604	0.81
179_L	219_V	0.602	0.81
515_L	518_R	0.601	0.81
513_V	517_T	0.601	0.81
57_E	107_E	0.601	0.81
289_R	293_K	0.601	0.81
29_E	33_R	0.600	0.81
373_W	452_A	0.599	0.81
108_D	159_P	0.597	0.81
510_W	513_V	0.596	0.80
61_L	94_A	0.594	0.80
140_A	218_S	0.594	0.80
376_L	503_S	0.593	0.80
448_L	451_E	0.590	0.80
303_A	385_I	0.590	0.80
35_G	38_W	0.589	0.80
76_G	85_H	0.588	0.80
462_Y	465_R	0.587	0.79
493_G	496_A	0.587	0.79
181_G	225_H	0.587	0.79
132_L	140_A	0.585	0.79
82_V	85_H	0.585	0.79
466_A	477_P	0.584	0.79
503_S	507_A	0.583	0.79
236_S	285_G	0.583	0.79
138_T	179_L	0.583	0.79
463_F	478_A	0.580	0.79
467_V	477_P	0.578	0.78
466_A	473_Q	0.578	0.78
203_L	277_I	0.577	0.78
123_L	127_V	0.577	0.78
153_F	281_L	0.576	0.78
129_A	133_C	0.576	0.78
361_A	364_R	0.576	0.78
260_K	425_E	0.574	0.78
135_I	139_F	0.574	0.78
336_L	339_H	0.574	0.78
181_G	217_F	0.574	0.78
75_Q	78_R	0.573	0.78
69_L	72_Y	0.573	0.78
136_T	140_A	0.573	0.78
132_L	139_F	0.572	0.78
242_R	249_R	0.571	0.78
42_F	46_I	0.571	0.78
450_S	457_K	0.571	0.78
130_G	312_R	0.571	0.78
223_D	243_F	0.570	0.77
478_A	499_L	0.570	0.77
99_R	102_N	0.570	0.77
469_R	472_Q	0.570	0.77
52_T	56_L	0.570	0.77
189_G	195_S	0.569	0.77
309_M	414_L	0.569	0.77
434_D	437_R	0.568	0.77
457_K	471_Q	0.568	0.77
465_R	469_R	0.568	0.77
309_M	393_V	0.567	0.77
84_F	87_A	0.566	0.77
126_Q	134_P	0.564	0.77
109_A	112_G	0.563	0.77
52_T	55_S	0.563	0.77
469_R	476_K	0.563	0.77
124_H	132_L	0.563	0.77
184_M	291_I	0.562	0.77
470_L	474_L	0.561	0.76
480_E	485_I	0.561	0.76
486_T	490_F	0.560	0.76
133_C	309_M	0.560	0.76
357_R	360_R	0.559	0.76
133_C	140_A	0.559	0.76
129_A	140_A	0.559	0.76
241_P	279_W	0.559	0.76
38_W	46_I	0.556	0.76
55_S	127_V	0.556	0.76
23_S	43_L	0.556	0.76
358_L	377_F	0.555	0.76
215_W	258_K	0.554	0.76
31_V	43_L	0.554	0.76
103_L	124_H	0.554	0.76
78_R	81_D	0.554	0.76
110_R	114_F	0.553	0.75
216_F	270_E	0.553	0.75
296_G	431_M	0.553	0.75
455_E	459_Q	0.553	0.75
192_D	195_S	0.553	0.75
118_A	143_P	0.552	0.75
464_D	478_A	0.552	0.75
373_W	448_L	0.551	0.75
33_R	36_A	0.549	0.75
38_W	47_G	0.549	0.75
482_G	491_L	0.549	0.75
493_G	497_Q	0.547	0.75
88_W	132_L	0.546	0.74
65_N	90_L	0.545	0.74
482_G	489_L	0.544	0.74
260_K	268_S	0.544	0.74
433_L	493_G	0.544	0.74
90_L	94_A	0.544	0.74
247_G	250_N	0.544	0.74
193_V	295_G	0.543	0.74
248_Q	277_I	0.543	0.74
188_Q	196_N	0.543	0.74
469_R	475_R	0.542	0.74
313_A	317_A	0.541	0.74
211_V	277_I	0.540	0.74
471_Q	478_A	0.540	0.74
456_V	513_V	0.540	0.74
216_F	268_S	0.540	0.74
151_A	155_D	0.538	0.73
461_R	465_R	0.538	0.73
355_L	385_I	0.537	0.73
252_I	273_F	0.536	0.73
514_M	517_T	0.535	0.73
316_L	411_L	0.535	0.73
212_G	225_H	0.535	0.73
470_L	475_R	0.535	0.73
302_C	386_C	0.534	0.73
24_D	33_R	0.533	0.73
322_H	330_P	0.533	0.73
110_R	113_A	0.533	0.73
463_F	474_L	0.533	0.73
151_A	297_M	0.532	0.73
34_E	360_R	0.531	0.72
55_S	123_L	0.531	0.72
166_D	169_L	0.530	0.72
138_T	143_P	0.528	0.72
33_R	119_A	0.528	0.72
88_W	179_L	0.527	0.72
340_V	399_V	0.527	0.72
122_M	125_A	0.527	0.72
141_A	180_I	0.525	0.72
486_T	489_L	0.525	0.72
50_L	54_E	0.525	0.72
470_L	476_K	0.525	0.72
347_Q	384_V	0.525	0.72
348_L	351_Q	0.525	0.72
461_R	472_Q	0.524	0.71
334_Q	430_I	0.524	0.71
291_I	298_T	0.524	0.71
427_S	431_M	0.524	0.71
227_V	240_V	0.524	0.71
479_E	485_I	0.523	0.71
350_G	384_V	0.523	0.71
125_A	137_M	0.523	0.71
397_M	400_L	0.523	0.71
117_R	132_L	0.522	0.71
490_F	494_C	0.521	0.71
30_A	34_E	0.520	0.71
347_Q	350_G	0.519	0.71
117_R	128_E	0.519	0.71
479_E	489_L	0.519	0.71
53_A	56_L	0.518	0.71
190_G	425_E	0.516	0.70
462_Y	473_Q	0.516	0.70
49_Q	53_A	0.516	0.70
202_R	206_G	0.515	0.70
471_Q	507_A	0.515	0.70
258_K	424_W	0.515	0.70
203_L	208_Y	0.512	0.70
462_Y	467_V	0.512	0.70
169_L	224_A	0.511	0.70
345_A	349_E	0.510	0.69
482_G	488_Q	0.510	0.69
162_S	171_P	0.509	0.69
342_S	345_A	0.508	0.69
184_M	295_G	0.508	0.69
66_P	414_L	0.508	0.69
319_Y	322_H	0.507	0.69
386_C	428_G	0.507	0.69
457_K	460_D	0.506	0.69
109_A	114_F	0.506	0.69
439_L	446_Y	0.506	0.69
77_R	85_H	0.505	0.69
30_A	353_A	0.504	0.69
387_K	422_S	0.503	0.68
123_L	128_E	0.502	0.68
134_P	140_A	0.501	0.68
202_R	279_W	0.501	0.68
479_E	488_Q	0.500	0.68
121_F	125_A	0.500	0.68

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3djlA	4	0.9723	100	0.3	Contact Map
4y9jA	4	0.9815	100	0.312	Contact Map
2uxwA	2	0.8909	100	0.38	Contact Map
2z1qA	2	0.8835	100	0.407	Contact Map
3owaA	3	0.9094	100	0.409	Contact Map
1bucA	4	0.6839	100	0.47	Contact Map
2jifA	4	0.6858	100	0.471	Contact Map
2d29A	4	0.6876	100	0.472	Contact Map
4l1fA	4	0.6839	100	0.472	Contact Map
4u83A	2	0.6673	100	0.473	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0137 seconds.