GREMLIN Database
YJBF - Uncharacterized lipoprotein YjbF
UniProt: P32687 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11924
Length: 212 (204)
Sequences: 316 (264)
Seq/√Len: 18.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
164_V179_R4.6371.00
52_Q204_T4.3151.00
91_L204_T3.9331.00
84_L91_L3.4771.00
182_I188_I2.7980.98
172_D180_Y2.7220.98
90_R110_D2.6350.98
143_S169_V2.5200.97
151_D164_V2.4560.96
167_E181_W2.3860.95
73_Q87_Q2.2380.94
76_W190_Q2.2130.93
15_A21_K2.1980.93
190_Q203_K2.1940.93
76_W181_W2.1670.92
15_A78_T2.1560.92
54_M84_L2.1270.92
192_E201_P2.0320.90
81_Q92_V2.0050.89
179_R192_E1.9460.88
90_R124_W1.9120.87
68_F84_L1.8920.86
74_Q86_T1.8880.86
91_L205_T1.8790.86
54_M196_G1.8770.86
78_T202_V1.8740.85
85_V93_K1.8370.84
144_V175_R1.8210.84
41_D45_Q1.7970.83
26_S36_G1.7960.83
48_P209_A1.7900.83
166_D177_H1.7180.80
18_A26_S1.7080.80
50_A208_K1.7040.79
42_D149_G1.6980.79
50_A69_A1.6950.79
50_A93_K1.6800.78
94_T180_Y1.6470.77
13_L16_C1.6360.76
153_V162_V1.6330.76
33_G49_Y1.6300.76
70_E75_K1.5620.73
15_A122_A1.5210.71
94_T97_G1.4940.70
128_M143_S1.4810.69
78_T135_Q1.4680.68
93_K169_V1.4580.68
167_E178_N1.4460.67
110_D145_F1.4250.66
84_L116_A1.4110.65
30_S33_G1.4100.65
50_A74_Q1.3880.64
57_N62_L1.3870.64
53_Y61_Q1.3860.64
104_V130_W1.3790.63
191_S204_T1.3720.63
98_G200_F1.3340.60
48_P86_T1.3250.60
51_S74_Q1.3030.59
194_Y200_F1.3020.59
169_V196_G1.3010.59
159_E185_E1.3000.58
145_F156_G1.2810.57
27_L67_A1.2470.55
84_L150_T1.2390.55
129_G197_A1.2300.54
44_I156_G1.2160.53
112_L124_W1.2050.53
183_D189_R1.2040.53
65_V208_K1.1810.51
93_K143_S1.1800.51
75_K83_T1.1650.50
111_P145_F1.1600.50
126_R180_Y1.1430.49
38_Q61_Q1.1430.49
9_I119_V1.1310.48
91_L191_S1.1300.48
92_V180_Y1.1220.47
192_E203_K1.1180.47
12_L58_G1.1170.47
184_S191_S1.1090.47
129_G137_R1.1030.46
95_L98_G1.0980.46
70_E151_D1.0980.46
32_F96_L1.0940.46
94_T101_L1.0700.44
6_L11_L1.0660.44
104_V126_R1.0660.44
163_R184_S1.0660.44
58_G103_E1.0610.44
91_L94_T1.0610.44
8_L14_Q1.0600.44
51_S130_W1.0580.43
50_A206_L1.0530.43
71_D105_N1.0300.42
52_Q64_V1.0240.41
28_W47_M1.0180.41
19_T23_L1.0180.41
82_A182_I1.0130.41
150_T184_S1.0050.40
63_F207_I1.0000.40
129_G196_G0.9950.40
14_Q122_A0.9930.40
195_L202_V0.9870.39
118_I161_P0.9760.39
43_D98_G0.9690.38
41_D147_W0.9690.38
81_Q102_I0.9600.38
80_D204_T0.9550.37
110_D143_S0.9550.37
36_G208_K0.9540.37
143_S176_W0.9520.37
53_Y75_K0.9500.37
51_S63_F0.9450.37
23_L52_Q0.9410.36
21_K38_Q0.9360.36
27_L86_T0.9320.36
167_E193_Q0.9280.36
110_D128_M0.9220.35
13_L165_L0.9010.34
63_F67_A0.8980.34
122_A139_A0.8970.34
196_G200_F0.8870.33
96_L127_T0.8830.33
97_G161_P0.8820.33
44_I164_V0.8800.33
52_Q196_G0.8770.33
80_D190_Q0.8760.33
7_I12_L0.8760.33
75_K119_V0.8740.33
56_L86_T0.8730.33
84_L160_T0.8660.32
173_Q192_E0.8640.32
169_V194_Y0.8640.32
57_N137_R0.8590.32
178_N181_W0.8590.32
48_P65_V0.8540.32
95_L123_S0.8530.32
27_L31_L0.8510.31
163_R183_D0.8430.31
53_Y90_R0.8420.31
65_V92_V0.8380.31
75_K130_W0.8280.30
21_K175_R0.8270.30
84_L126_R0.8190.30
128_M155_V0.8180.30
54_M204_T0.8160.30
11_L88_H0.8150.30
47_M188_I0.8130.29
133_Y204_T0.8100.29
14_Q148_D0.8060.29
48_P66_L0.8040.29
23_L188_I0.8030.29
90_R112_L0.8020.29
77_V209_A0.8020.29
10_C164_V0.8000.29
138_Y171_T0.7930.28
20_T27_L0.7910.28
22_E93_K0.7880.28
111_P143_S0.7880.28
22_E92_V0.7820.28
50_A86_T0.7750.28
96_L100_N0.7740.27
30_S41_D0.7720.27
24_G198_D0.7670.27
113_I182_I0.7660.27
194_Y205_T0.7650.27
9_I146_K0.7630.27
75_K93_K0.7590.27
181_W190_Q0.7590.27
72_G128_M0.7570.27
161_P173_Q0.7550.27
60_P202_V0.7550.27
97_G122_A0.7530.26
133_Y156_G0.7530.26
191_S206_L0.7480.26
11_L40_T0.7480.26
12_L34_T0.7470.26
155_V158_D0.7450.26
7_I54_M0.7420.26
152_T159_E0.7390.26
95_L136_V0.7300.25
75_K143_S0.7290.25
49_Y208_K0.7290.25
106_N124_W0.7140.25
25_N28_W0.7130.25
30_S81_Q0.7120.25
47_M209_A0.7120.25
36_G53_Y0.7110.24
126_R133_Y0.7100.24
30_S36_G0.7070.24
48_P188_I0.7060.24
68_F113_I0.7050.24
60_P138_Y0.7040.24
22_E27_L0.6950.24
174_A180_Y0.6950.24
104_V128_M0.6940.24
57_N99_D0.6920.24
169_V200_F0.6910.24
91_L95_L0.6900.24
160_T177_H0.6850.23
144_V198_D0.6850.23
159_E175_R0.6810.23
162_V174_A0.6800.23
40_T77_V0.6770.23
9_I13_L0.6770.23
22_E43_D0.6760.23
153_V181_W0.6720.23
154_K201_P0.6710.23
180_Y201_P0.6710.23
81_Q148_D0.6710.23
117_Q203_K0.6710.23
15_A140_T0.6690.23
143_S194_Y0.6680.23
17_S138_Y0.6680.23
55_Q205_T0.6640.22
128_M190_Q0.6630.22
136_V172_D0.6610.22
180_Y200_F0.6610.22
24_G78_T0.6610.22
57_N200_F0.6570.22
67_A94_T0.6560.22
55_Q203_K0.6530.22
98_G119_V0.6480.22
59_G103_E0.6400.21
41_D173_Q0.6390.21
115_P171_T0.6350.21
172_D188_I0.6290.21
39_L108_A0.6290.21
138_Y194_Y0.6260.21
147_W165_L0.6240.21
66_L138_Y0.6230.21
206_L209_A0.6180.20
65_V93_K0.6170.20
83_T207_I0.6120.20
98_G104_V0.6050.20
56_L202_V0.6050.20
47_M177_H0.6040.20
40_T103_E0.6020.20
131_T196_G0.6020.20
6_L107_L0.5990.20
187_Q206_L0.5970.20
97_G146_K0.5910.19
31_L177_H0.5890.19
72_G87_Q0.5860.19
85_V101_L0.5860.19
95_L191_S0.5840.19
54_M91_L0.5810.19
16_C89_G0.5730.19
44_I209_A0.5720.19
8_L139_A0.5710.19
25_N159_E0.5710.19
109_A121_G0.5700.19
50_A63_F0.5690.19
28_W149_G0.5690.19
101_L104_V0.5680.18
44_I199_Y0.5680.18
7_I27_L0.5680.18
94_T100_N0.5660.18
64_V140_T0.5650.18
78_T81_Q0.5640.18
29_D53_Y0.5640.18
157_S171_T0.5610.18
121_G153_V0.5590.18
15_A206_L0.5590.18
27_L185_E0.5580.18
86_T90_R0.5560.18
158_D207_I0.5550.18
28_W88_H0.5540.18
76_W178_N0.5460.18
159_E207_I0.5420.18
29_D87_Q0.5410.17
161_P174_A0.5400.17
32_F35_P0.5400.17
17_S162_V0.5370.17
69_A91_L0.5370.17
199_Y202_V0.5350.17
48_P208_K0.5340.17
116_A128_M0.5330.17
130_W169_V0.5330.17
134_Q190_Q0.5320.17
57_N201_P0.5320.17
25_N64_V0.5310.17
97_G202_V0.5260.17
150_T157_S0.5240.17
7_I21_K0.5220.17
133_Y137_R0.5210.17
123_S167_E0.5200.17
169_V176_W0.5200.17
39_L160_T0.5200.17
50_A127_T0.5140.17
148_D159_E0.5130.16
23_L208_K0.5110.16
143_S171_T0.5090.16
149_G152_T0.5090.16
170_S175_R0.5080.16
63_F208_K0.5070.16
146_K161_P0.5060.16
165_L194_Y0.5060.16
126_R174_A0.5050.16
104_V143_S0.5040.16
108_A189_R0.5030.16
28_W114_K0.5030.16
86_T132_E0.5030.16
34_T45_Q0.5020.16
163_R204_T0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2in5A 2 0.9009 100 0.19 Contact Map
3zbiC 1 0.1132 70.9 0.933 Contact Map
4av2M 1 0.3538 39.9 0.945 Contact Map
4qflA 1 0.7689 36.5 0.946 Contact Map
4lm8A 1 0.5896 24.8 0.95 Contact Map
4fvsA 1 0.8726 23.7 0.951 Contact Map
4fajA 1 0.8349 22.8 0.951 Contact Map
3pmqA 1 0.5519 17.2 0.954 Contact Map
4orrA 2 0.6887 14.7 0.955 Contact Map
2hn8A 1 0.1415 13.1 0.956 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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