GREMLIN Database
YIBI - Uncharacterized protein YibI
UniProt: P32108 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11765
Length: 120 (107)
Sequences: 160 (75)
Seq/√Len: 7.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
98_R103_E5.7741.00
46_T67_T3.9040.96
40_H44_I3.5380.93
2_F6_F3.1220.87
13_F17_V3.0540.86
4_N31_L2.3000.65
37_N71_P2.1880.61
19_F68_L2.1610.60
69_Y85_E2.1170.58
46_T69_Y2.0010.54
91_E103_E1.9830.53
70_Q73_R1.9620.52
91_E96_S1.9480.52
61_F64_I1.7270.43
31_L72_E1.7250.43
13_F77_M1.6750.41
13_F61_F1.6330.39
69_Y84_Q1.6320.39
37_N57_V1.4950.34
91_E98_R1.4890.34
87_A90_P1.4360.32
40_H50_V1.3860.31
46_T50_V1.3740.30
99_I102_L1.3580.30
11_L72_E1.3560.30
11_L70_Q1.3560.30
84_Q89_D1.2940.28
23_I45_H1.2820.27
7_A54_T1.2660.27
14_V34_K1.2300.26
50_V58_I1.2220.25
25_I56_H1.2120.25
6_F100_S1.1860.24
30_Y63_W1.1850.24
83_S90_P1.1800.24
3_L8_L1.1560.24
25_I85_E1.1510.23
45_H68_L1.1470.23
37_N68_L1.1080.22
88_T99_I1.1000.22
19_F23_I1.0730.21
57_V101_R1.0590.21
7_A74_G1.0570.21
16_L24_A1.0520.21
24_A41_A1.0430.21
54_T74_G1.0430.21
69_Y89_D1.0260.20
19_F54_T1.0210.20
6_F22_I1.0130.20
85_E89_D1.0100.20
10_V24_A1.0100.20
73_R76_G1.0090.20
88_T93_A1.0030.20
41_A77_M0.9750.19
94_A99_I0.9720.19
15_F77_M0.9700.19
18_I23_I0.9520.18
34_K67_T0.9450.18
15_F41_A0.9320.18
72_E91_E0.9290.18
96_S103_E0.9160.17
53_F102_L0.9040.17
58_I69_Y0.8900.17
84_Q90_P0.8820.17
6_F10_V0.8780.17
11_L73_R0.8510.16
31_L45_H0.8510.16
4_N41_A0.8450.16
71_P77_M0.8400.16
15_F25_I0.8390.16
15_F97_D0.8370.16
53_F57_V0.8340.16
6_F9_G0.8270.16
58_I73_R0.8260.16
15_F58_I0.8230.15
104_H107_A0.8180.15
17_V101_R0.8110.15
83_S104_H0.8040.15
50_V72_E0.8020.15
26_H48_G0.8000.15
27_D48_G0.8000.15
23_I28_I0.8000.15
24_A96_S0.7950.15
14_V28_I0.7930.15
40_H71_P0.7930.15
89_D93_A0.7840.15
79_S82_A0.7820.15
91_E102_L0.7750.15
17_V96_S0.7680.14
4_N15_F0.7670.14
19_F74_G0.7620.14
42_D74_G0.7610.14
46_T58_I0.7560.14
7_A76_G0.7470.14
17_V94_A0.7470.14
22_I74_G0.7330.14
22_I54_T0.7290.14
100_S103_E0.7270.14
82_A86_K0.7250.14
10_V17_V0.7130.13
42_D67_T0.7060.13
46_T79_S0.6970.13
31_L71_P0.6950.13
41_A70_Q0.6930.13
15_F35_K0.6920.13
61_F69_Y0.6920.13
19_F67_T0.6800.13
18_I50_V0.6650.13
50_V90_P0.6550.12
87_A100_S0.6530.12
18_I96_S0.6520.12
16_L93_A0.6480.12
35_K98_R0.6470.12
25_I79_S0.6450.12
23_I48_G0.6450.12
85_E93_A0.6420.12
79_S84_Q0.6340.12
2_F13_F0.6320.12
68_L78_Q0.6260.12
31_L68_L0.6240.12
17_V107_A0.6240.12
10_V15_F0.6190.12
24_A77_M0.6090.12
46_T84_Q0.6070.12
90_P99_I0.6060.12
57_V93_A0.6040.12
40_H92_I0.6020.11
32_I42_D0.5960.11
86_K90_P0.5930.11
23_I68_L0.5850.11
28_I45_H0.5800.11
57_V107_A0.5740.11
78_Q83_S0.5680.11
54_T73_R0.5640.11
79_S85_E0.5620.11
6_F12_I0.5580.11
70_Q76_G0.5540.11
15_F71_P0.5530.11
40_H79_S0.5490.11
87_A102_L0.5470.11
2_F35_K0.5450.11
101_R104_H0.5450.11
58_I72_E0.5430.11
54_T68_L0.5420.11
57_V82_A0.5410.11
41_A76_G0.5380.10
7_A17_V0.5370.10
41_A72_E0.5350.10
58_I70_Q0.5290.10
61_F75_W0.5270.10
82_A85_E0.5210.10
64_I75_W0.5210.10
27_D45_H0.5150.10
26_H45_H0.5150.10
7_A73_R0.5090.10
54_T76_G0.5050.10
14_V62_L0.5050.10
19_F75_W0.5030.10
10_V13_F0.5010.10
7_A22_I0.5000.10
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zxuA 1 0 51.7 0.942 Contact Map
3viqB 1 0.3167 46.5 0.944 Contact Map
2pmsC 1 0.2833 42 0.946 Contact Map
3rvyA 3 0.2417 41.6 0.946 Contact Map
3u06A 2 0.3333 37.7 0.947 Contact Map
3ra3A 1 0.2333 35.7 0.948 Contact Map
3efgA 3 0.3083 34.1 0.948 Contact Map
4liyA 3 0 33.3 0.948 Contact Map
4dznA 3 0.2667 31.6 0.949 Contact Map
4etpA 1 0.3 31.2 0.949 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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