WCAI - ECOLI - GREMLIN Contacts

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WCAI - Putative colanic acid biosynthesis glycosyl transferase WcaI

UniProt:	P32057	Sequences: MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYYPQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQRRWKPDRIIGVVPTLFCAPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVAQLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADADVDALRNQLDLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLEKMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGNAVITAEAYTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTLDKENVLRQFINDIRG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11790
Length:	407 (344)
Sequences:	53233 (44708)
Seq/√Len:	2410.5

ECOLI - WCAI GLGA RFAG WCAL RFAB WBBK WCAC
BACSU - YPJH GLGA EPSF COTSA YTCC EPSD TUAH TUAC YQGM YKVP CGEB TAGE
HALSA - Q9HS45 Q9HQQ0 Q9HSW1 Q9HRP8 Q9HSV2 Q9HSV4 Q9HQT2 Q9HRP9
SULSO - Q97V80 Q97XT7 Q980C8 Q97V61 Q97ZD3 Q97UM0 Q97VL4 Q97UU3 Q97XU2 Q97XT8 Q7LXI2 Q97XT5 Q97XT9 Q7LXM9 Q97XT6 Q7LXF8 Q97XF6 Q97XT1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
235_L	305_G	4.776	1.00
262_I	288_Q	3.693	1.00
272_K	276_E	3.317	1.00
176_N	199_I	3.203	1.00
308_H	328_I	3.159	1.00
233_I	264_A	2.948	1.00
255_R	368_V	2.798	1.00
110_I	405_I	2.792	1.00
264_A	290_F	2.738	1.00
387_Y	391_T	2.720	1.00
231_K	262_I	2.703	1.00
251_E	278_M	2.675	1.00
236_Y	246_L	2.669	1.00
257_R	286_N	2.327	1.00
185_M	189_I	2.266	1.00
251_E	364_V	2.247	1.00
232_K	375_L	2.208	1.00
36_R	106_P	2.207	1.00
245_G	248_N	2.187	1.00
36_R	104_W	2.179	1.00
377_L	380_H	2.130	1.00
278_M	282_R	2.077	1.00
370_G	373_Q	2.069	1.00
339_A	346_G	2.065	1.00
385_R	389_E	2.060	1.00
233_I	262_I	2.053	1.00
4_L	106_P	2.052	1.00
271_G	274_R	2.040	1.00
266_V	301_L	2.035	1.00
264_A	288_Q	2.012	1.00
33_H	402_I	1.978	1.00
234_I	307_C	1.967	1.00
232_K	306_D	1.961	1.00
253_A	263_F	1.957	1.00
255_R	365_E	1.941	1.00
349_C	356_A	1.941	1.00
233_I	304_M	1.898	1.00
373_Q	377_L	1.884	1.00
110_I	136_H	1.881	1.00
350_E	354_G	1.866	1.00
245_G	313_K	1.825	1.00
357_V	370_G	1.805	1.00
332_G	385_R	1.805	1.00
396_N	400_Q	1.781	1.00
355_I	387_Y	1.763	1.00
31_Q	399_R	1.753	1.00
182_R	185_M	1.751	1.00
254_D	282_R	1.749	1.00
360_E	366_A	1.747	1.00
36_R	68_W	1.747	1.00
185_M	200_F	1.718	1.00
308_H	333_G	1.709	1.00
373_Q	380_H	1.709	1.00
293_Q	297_A	1.701	1.00
249_V	263_F	1.675	1.00
204_W	394_K	1.663	1.00
135_L	174_V	1.663	1.00
182_R	347_Q	1.642	1.00
179_T	198_V	1.632	1.00
237_S	298_L	1.625	1.00
372_R	376_L	1.608	1.00
350_E	387_Y	1.597	1.00
357_V	373_Q	1.592	1.00
253_A	261_L	1.590	1.00
339_A	360_E	1.589	1.00
27_W	395_E	1.570	1.00
27_W	398_L	1.555	1.00
176_N	404_D	1.544	1.00
294_S	297_A	1.538	1.00
363_S	366_A	1.529	1.00
27_W	30_A	1.524	1.00
185_M	198_V	1.524	1.00
249_V	309_L	1.512	1.00
366_A	370_G	1.504	1.00
354_G	383_V	1.502	1.00
182_R	200_F	1.500	1.00
22_G	26_E	1.499	1.00
381_N	384_A	1.487	1.00
266_V	290_F	1.472	1.00
243_K	314_R	1.472	1.00
248_N	364_V	1.472	1.00
337_I	345_L	1.465	1.00
256_L	372_R	1.464	1.00
297_A	300_A	1.453	1.00
247_E	278_M	1.446	1.00
248_N	313_K	1.444	1.00
280_Q	285_R	1.437	1.00
31_Q	402_I	1.431	1.00
4_L	38_I	1.430	1.00
36_R	66_T	1.427	1.00
350_E	355_I	1.407	1.00
359_V	370_G	1.407	1.00
305_G	333_G	1.386	1.00
179_T	185_M	1.386	1.00
293_Q	301_L	1.386	1.00
266_V	293_Q	1.363	1.00
268_Q	272_K	1.357	1.00
236_Y	249_V	1.354	1.00
255_R	364_V	1.343	1.00
252_A	367_L	1.342	1.00
364_V	368_V	1.339	1.00
264_A	301_L	1.338	1.00
299_P	331_V	1.337	1.00
277_K	281_Q	1.336	1.00
233_I	306_D	1.335	1.00
240_I	265_I	1.319	1.00
235_L	266_V	1.318	1.00
111_G	133_T	1.284	1.00
189_I	195_A	1.279	1.00
234_I	371_I	1.274	1.00
278_M	281_Q	1.273	1.00
366_A	369_A	1.270	1.00
194_A	197_N	1.266	1.00
234_I	309_L	1.265	1.00
264_A	305_G	1.264	1.00
396_N	399_R	1.257	1.00
246_L	265_I	1.255	1.00
178_S	401_F	1.252	1.00
5_V	112_V	1.252	1.00
5_V	28_L	1.250	1.00
383_V	386_E	1.243	1.00
400_Q	403_N	1.237	1.00
182_R	186_N	1.223	1.00
290_F	293_Q	1.206	1.00
210_F	331_V	1.204	1.00
317_A	326_T	1.199	1.00
232_K	307_C	1.199	1.00
368_V	372_R	1.176	1.00
303_K	331_V	1.169	1.00
273_A	276_E	1.167	1.00
186_N	189_I	1.150	1.00
20_Y	319_A	1.132	1.00
298_L	302_L	1.127	1.00
27_W	31_Q	1.126	1.00
332_G	382_T	1.124	1.00
247_E	251_E	1.120	1.00
295_Y	298_L	1.111	1.00
393_D	396_N	1.111	1.00
273_A	277_K	1.108	1.00
359_V	367_L	1.105	1.00
232_K	261_L	1.101	1.00
302_L	331_V	1.099	1.00
338_T	359_V	1.096	1.00
233_I	305_G	1.094	1.00
394_K	397_V	1.085	1.00
231_K	260_P	1.083	1.00
276_E	280_Q	1.081	1.00
179_T	188_A	1.080	1.00
397_V	400_Q	1.080	1.00
248_N	338_T	1.078	1.00
209_R	299_P	1.074	1.00
337_I	358_C	1.072	1.00
180_I	184_M	1.072	1.00
351_T	370_G	1.069	1.00
5_V	25_V	1.068	1.00
313_K	362_E	1.065	1.00
248_N	251_E	1.060	1.00
180_I	203_N	1.055	1.00
178_S	404_D	1.054	1.00
311_V	367_L	1.052	1.00
235_L	301_L	1.035	1.00
299_P	303_K	1.035	1.00
386_E	389_E	1.031	1.00
290_F	301_L	1.029	1.00
232_K	260_P	1.025	1.00
369_A	373_Q	1.024	1.00
251_E	282_R	1.019	1.00
237_S	266_V	1.019	1.00
248_N	362_E	1.019	1.00
344_E	347_Q	1.017	1.00
333_G	381_N	1.017	1.00
382_T	386_E	1.005	1.00
23_E	26_E	1.001	1.00
237_S	302_L	0.999	1.00
23_E	394_K	0.998	1.00
357_V	374_A	0.993	1.00
312_Q	315_G	0.989	1.00
279_A	289_F	0.988	1.00
329_L	335_A	0.983	1.00
239_N	243_K	0.979	1.00
29_A	32_G	0.975	1.00
254_D	258_D	0.974	1.00
180_I	316_A	0.971	1.00
315_G	318_D	0.968	1.00
111_G	135_L	0.968	1.00
381_N	385_R	0.964	1.00
210_F	299_P	0.964	1.00
247_E	274_R	0.962	1.00
234_I	253_A	0.961	1.00
264_A	304_M	0.959	1.00
207_I	393_D	0.958	1.00
250_I	279_A	0.957	1.00
138_Q	319_A	0.956	1.00
186_N	190_E	0.954	1.00
204_W	397_V	0.954	1.00
397_V	401_F	0.950	1.00
248_N	367_L	0.949	1.00
125_L	129_S	0.946	1.00
256_L	371_I	0.946	1.00
179_T	184_M	0.945	1.00
249_V	311_V	0.943	1.00
25_V	37_V	0.939	1.00
328_I	333_G	0.938	1.00
247_E	313_K	0.929	1.00
15_T	18_G	0.928	1.00
321_L	345_L	0.928	1.00
20_Y	136_H	0.923	1.00
236_Y	265_I	0.922	1.00
19_K	23_E	0.921	1.00
336_V	359_V	0.920	1.00
254_D	257_R	0.917	1.00
174_V	177_V	0.916	1.00
337_I	349_C	0.914	1.00
318_D	345_L	0.913	1.00
279_A	284_L	0.913	1.00
261_L	375_L	0.911	1.00
308_H	320_V	0.904	1.00
310_V	320_V	0.904	1.00
253_A	286_N	0.901	1.00
96_F	128_L	0.900	1.00
21_T	112_V	0.897	1.00
256_L	368_V	0.895	1.00
341_A	346_G	0.895	1.00
355_I	384_A	0.895	1.00
256_L	375_L	0.893	1.00
274_R	277_K	0.891	1.00
134_V	178_S	0.887	1.00
187_K	190_E	0.885	1.00
3_I	33_H	0.883	1.00
133_T	174_V	0.880	1.00
124_L	128_L	0.879	1.00
255_R	258_D	0.876	1.00
256_L	261_L	0.875	1.00
228_P	231_K	0.875	1.00
262_I	286_N	0.875	1.00
206_E	209_R	0.872	1.00
247_E	271_G	0.872	1.00
236_Y	311_V	0.871	1.00
25_V	29_A	0.870	1.00
329_L	355_I	0.869	1.00
357_V	380_H	0.868	1.00
112_V	138_Q	0.867	1.00
329_L	384_A	0.867	1.00
187_K	191_K	0.865	1.00
274_R	278_M	0.862	1.00
252_A	368_V	0.859	1.00
178_S	201_F	0.855	1.00
360_E	363_S	0.851	1.00
329_L	387_Y	0.851	1.00
19_K	295_Y	0.849	1.00
399_R	403_N	0.848	1.00
307_C	374_A	0.847	1.00
20_Y	138_Q	0.847	1.00
206_E	210_F	0.846	1.00
302_L	333_G	0.844	1.00
203_N	319_A	0.841	1.00
336_V	370_G	0.841	1.00
310_V	345_L	0.839	1.00
241_G	270_G	0.836	1.00
189_I	198_V	0.830	1.00
277_K	280_Q	0.829	1.00
93_S	97_P	0.829	1.00
31_Q	395_E	0.828	1.00
251_E	255_R	0.827	1.00
235_L	302_L	0.819	1.00
349_C	358_C	0.819	1.00
20_Y	203_N	0.818	1.00
23_E	206_E	0.817	1.00
169_S	173_N	0.815	1.00
252_A	364_V	0.815	1.00
126_A	133_T	0.815	1.00
254_D	284_L	0.810	1.00
309_L	371_I	0.809	1.00
310_V	321_L	0.806	1.00
334_N	374_A	0.805	1.00
183_S	186_N	0.802	1.00
365_E	369_A	0.802	1.00
251_E	254_D	0.800	1.00
340_E	345_L	0.799	1.00
36_R	40_A	0.799	1.00
353_P	373_Q	0.795	1.00
334_N	381_N	0.794	1.00
132_R	175_D	0.792	1.00
369_A	372_R	0.789	1.00
307_C	371_I	0.787	1.00
134_V	176_N	0.784	1.00
242_E	247_E	0.782	1.00
399_R	402_I	0.782	1.00
393_D	397_V	0.781	1.00
199_I	400_Q	0.777	1.00
242_E	271_G	0.777	1.00
295_Y	299_P	0.774	1.00
236_Y	308_H	0.774	1.00
23_E	27_W	0.773	1.00
339_A	358_C	0.772	1.00
395_E	399_R	0.772	1.00
301_L	304_M	0.770	1.00
300_A	304_M	0.770	1.00
244_Q	315_G	0.770	1.00
111_G	117_F	0.767	1.00
394_K	398_L	0.767	1.00
165_A	168_R	0.764	1.00
279_A	287_M	0.764	1.00
373_Q	376_L	0.760	1.00
165_A	169_S	0.760	1.00
201_F	404_D	0.758	1.00
98_L	104_W	0.758	1.00
244_Q	312_Q	0.757	1.00
236_Y	263_F	0.757	1.00
237_S	308_H	0.756	1.00
256_L	259_E	0.756	1.00
351_T	354_G	0.752	1.00
387_Y	392_L	0.752	1.00
300_A	303_K	0.751	1.00
229_D	232_K	0.747	1.00
183_S	187_K	0.743	1.00
351_T	355_I	0.739	1.00
7_G	21_T	0.735	1.00
139_D	243_K	0.734	1.00
238_G	246_L	0.734	1.00
15_T	239_N	0.734	1.00
365_E	368_V	0.729	1.00
202_P	400_Q	0.729	1.00
180_I	319_A	0.724	1.00
138_Q	180_I	0.722	1.00
202_P	347_Q	0.721	1.00
318_D	321_L	0.718	1.00
112_V	136_H	0.718	1.00
199_I	202_P	0.715	1.00
240_I	272_K	0.713	1.00
199_I	404_D	0.711	1.00
234_I	375_L	0.711	1.00
108_R	405_I	0.708	1.00
92_V	96_F	0.707	1.00
20_Y	401_F	0.706	1.00
110_I	401_F	0.706	1.00
242_E	313_K	0.705	1.00
108_R	134_V	0.704	1.00
293_Q	298_L	0.703	1.00
29_A	35_V	0.703	1.00
269_G	272_K	0.703	1.00
276_E	289_F	0.695	1.00
202_P	392_L	0.694	1.00
19_K	22_G	0.694	1.00
234_I	261_L	0.694	1.00
213_V	303_K	0.689	1.00
401_F	405_I	0.688	1.00
350_E	353_P	0.686	1.00
346_G	358_C	0.683	1.00
29_A	64_A	0.681	1.00
5_V	35_V	0.681	1.00
126_A	129_S	0.681	1.00
122_M	126_A	0.678	1.00
7_G	17_I	0.674	1.00
31_Q	398_L	0.674	1.00
309_L	367_L	0.674	1.00
336_V	374_A	0.669	1.00
329_L	381_N	0.668	1.00
34_E	66_T	0.668	1.00
338_T	361_P	0.668	1.00
252_A	371_I	0.664	1.00
161_Q	164_T	0.664	1.00
383_V	387_Y	0.661	1.00
338_T	367_L	0.660	1.00
129_S	132_R	0.659	1.00
384_A	387_Y	0.655	1.00
26_E	30_A	0.654	1.00
30_A	395_E	0.654	1.00
326_T	392_L	0.653	1.00
168_R	172_H	0.652	1.00
245_G	362_E	0.649	1.00
25_V	35_V	0.648	1.00
279_A	282_R	0.646	1.00
24_M	401_F	0.646	1.00
26_E	63_G	0.645	1.00
351_T	357_V	0.645	1.00
253_A	256_L	0.642	1.00
113_V	116_L	0.640	1.00
207_I	330_A	0.635	1.00
312_Q	318_D	0.635	1.00
201_F	400_Q	0.634	1.00
207_I	389_E	0.633	1.00
93_S	96_F	0.630	1.00
359_V	366_A	0.629	1.00
382_T	385_R	0.629	1.00
201_F	401_F	0.628	1.00
238_G	244_Q	0.626	1.00
301_L	305_G	0.624	1.00
308_H	335_A	0.623	1.00
27_W	394_K	0.621	1.00
385_R	388_A	0.621	1.00
245_G	311_V	0.620	1.00
246_L	271_G	0.615	1.00
127_K	173_N	0.614	1.00
32_G	402_I	0.614	1.00
5_V	110_I	0.612	1.00
250_I	287_M	0.612	1.00
63_G	66_T	0.612	1.00
271_G	275_L	0.611	1.00
182_R	202_P	0.610	1.00
259_E	376_L	0.609	1.00
29_A	33_H	0.608	1.00
349_C	355_I	0.605	1.00
9_N	18_G	0.605	1.00
136_H	401_F	0.604	1.00
307_C	336_V	0.602	1.00
232_K	235_L	0.601	1.00
179_T	200_F	0.600	1.00
4_L	36_R	0.596	1.00
398_L	402_I	0.595	1.00
240_I	246_L	0.591	1.00
183_S	346_G	0.590	1.00
259_E	372_R	0.590	1.00
109_I	131_A	0.588	1.00
257_R	261_L	0.588	1.00
161_Q	165_A	0.586	1.00
239_N	244_Q	0.586	1.00
208_A	211_Q	0.586	1.00
209_R	295_Y	0.586	1.00
184_M	187_K	0.586	1.00
106_P	131_A	0.585	1.00
355_I	383_V	0.585	1.00
267_G	291_P	0.584	1.00
90_F	94_S	0.582	1.00
263_F	287_M	0.580	1.00
17_I	113_V	0.578	1.00
189_I	192_G	0.577	1.00
311_V	338_T	0.577	1.00
328_I	335_A	0.577	1.00
125_L	128_L	0.577	1.00
39_T	67_V	0.574	1.00
20_Y	112_V	0.573	1.00
14_L	292_L	0.572	1.00
140_Y	143_D	0.571	1.00
252_A	256_L	0.570	1.00
211_Q	214_A	0.569	1.00
5_V	405_I	0.567	1.00
181_S	184_M	0.567	1.00
138_Q	203_N	0.567	1.00
317_A	392_L	0.567	1.00
248_N	252_A	0.566	1.00
109_I	126_A	0.566	1.00
185_M	195_A	0.566	1.00
266_V	298_L	0.563	1.00
66_T	69_R	0.562	1.00
336_V	371_I	0.561	1.00
339_A	361_P	0.561	1.00
302_L	308_H	0.559	1.00
244_Q	320_V	0.559	1.00
32_G	35_V	0.558	1.00
103_R	106_P	0.557	1.00
25_V	65_A	0.557	1.00
206_E	394_K	0.555	1.00
211_Q	303_K	0.552	1.00
250_I	275_L	0.551	1.00
169_S	172_H	0.550	1.00
20_Y	24_M	0.549	1.00
245_G	338_T	0.549	1.00
207_I	388_A	0.549	1.00
235_L	308_H	0.547	1.00
326_T	348_L	0.547	1.00
235_L	264_A	0.546	1.00
275_L	278_M	0.546	1.00
321_L	348_L	0.545	1.00
275_L	289_F	0.544	1.00
233_I	301_L	0.543	1.00
321_L	335_A	0.542	1.00
24_M	27_W	0.542	1.00
134_V	405_I	0.541	1.00
329_L	388_A	0.540	1.00
26_E	29_A	0.537	1.00
340_E	346_G	0.537	1.00
310_V	318_D	0.535	1.00
230_N	260_P	0.533	1.00
257_R	260_P	0.533	1.00
102_R	129_S	0.533	1.00
249_V	253_A	0.533	1.00
136_H	178_S	0.532	1.00
341_A	344_E	0.532	1.00
183_S	347_Q	0.529	1.00
133_T	175_D	0.529	1.00
279_A	285_R	0.528	1.00
321_L	337_I	0.528	1.00
247_E	275_L	0.527	1.00
94_S	97_P	0.527	1.00
184_M	316_A	0.526	1.00
260_P	286_N	0.526	1.00
235_L	333_G	0.523	1.00
69_R	72_L	0.522	1.00
232_K	378_P	0.520	1.00
228_P	262_I	0.517	1.00
108_R	132_R	0.516	1.00
307_C	375_L	0.515	1.00
268_Q	292_L	0.514	1.00
4_L	109_I	0.514	1.00
105_K	131_A	0.513	1.00
106_P	109_I	0.512	1.00
242_E	274_R	0.510	1.00
123_R	133_T	0.510	1.00
202_P	397_V	0.510	1.00
284_L	287_M	0.509	1.00
176_N	180_I	0.508	1.00
364_V	367_L	0.508	1.00
176_N	197_N	0.508	1.00
332_G	381_N	0.508	1.00
111_G	122_M	0.508	1.00
162_L	165_A	0.507	1.00
202_P	391_T	0.507	1.00
210_F	330_A	0.504	1.00
137_I	140_Y	0.503	1.00
252_A	309_L	0.503	1.00
276_E	279_A	0.503	1.00
375_L	378_P	0.501	1.00
205_S	330_A	0.501	1.00
99_M	106_P	0.500	1.00
23_E	319_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1rzuA	1	0.9705	100	0.189	Contact Map
3c48A	2	0.914	100	0.189	Contact Map
2r60A	1	0.9631	100	0.192	Contact Map
3froA	3	0.9607	100	0.2	Contact Map
2qzsA	1	0.973	100	0.209	Contact Map
4n9wA	1	0.8354	100	0.211	Contact Map
3s28A	4	0.9656	100	0.226	Contact Map
3okpA	1	0.8821	100	0.228	Contact Map
2jjmA	4	0.8575	100	0.229	Contact Map
3vueA	1	0.9631	100	0.244	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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