PRPC - ECOLI - GREMLIN Contacts

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PRPC - 2-methylcitrate synthase

UniProt:	P31660	Sequences: MSDTTILQNSTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAKHCEFEEVAHLLIHGKLPTRDELAAYKTKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGEKPSQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSDMYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSQEGGSLKMYNIADRLETVMWESKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYVGPEDRPFVALDKRQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11756
Length:	389 (365)
Sequences:	4102 (2005)
Seq/√Len:	104.9

ECOLI - PRPC CISY
BACSU - CISY3 CISY2 CISY
HALSA - Q9HNH4
SULSO - CISY

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
212_I	225_G	7.384	1.00
163_E	166_D	5.344	1.00
51_D	381_P	4.081	1.00
209_S	226_A	3.907	1.00
69_K	75_E	3.414	1.00
73_R	77_A	3.387	1.00
56_C	382_F	3.167	1.00
171_G	187_E	3.130	1.00
48_D	51_D	3.092	1.00
183_S	297_E	2.931	1.00
309_R	312_T	2.922	1.00
54_K	289_R	2.886	1.00
212_I	229_A	2.754	1.00
168_S	171_G	2.732	1.00
292_K	308_D	2.636	1.00
72_T	75_E	2.625	1.00
262_R	267_E	2.621	1.00
217_S	231_R	2.606	1.00
254_E	257_A	2.547	1.00
204_A	215_T	2.509	1.00
60_E	76_L	2.434	1.00
186_W	335_M	2.404	1.00
250_E	254_E	2.381	1.00
247_Q	333_N	2.360	1.00
256_E	309_R	2.327	1.00
114_V	227_I	2.318	1.00
211_V	368_I	2.260	1.00
69_K	380_R	2.237	1.00
172_H	176_L	2.142	1.00
136_A	355_A	2.135	1.00
208_T	229_A	2.120	1.00
215_T	229_A	2.053	1.00
170_G	191_H	2.052	1.00
23_S	366_K	1.993	1.00
289_R	293_Q	1.961	1.00
147_L	348_I	1.897	1.00
213_A	222_A	1.889	1.00
95_T	98_E	1.874	1.00
57_E	76_L	1.873	1.00
62_A	352_T	1.871	1.00
185_S	297_E	1.859	1.00
307_A	330_V	1.857	1.00
256_E	313_V	1.854	1.00
63_H	69_K	1.849	1.00
143_L	351_V	1.825	1.00
309_R	313_V	1.824	1.00
257_A	261_K	1.814	1.00
167_D	171_G	1.791	1.00
260_R	264_E	1.785	1.00
337_V	345_L	1.777	1.00
188_K	191_H	1.775	1.00
247_Q	339_T	1.771	1.00
152_H	157_G	1.749	1.00
292_K	296_Q	1.729	1.00
213_A	358_I	1.727	1.00
47_Y	380_R	1.718	1.00
193_S	332_Y	1.679	1.00
240_E	244_E	1.665	1.00
261_K	265_N	1.643	1.00
301_L	333_N	1.641	1.00
168_S	187_E	1.638	1.00
177_L	337_V	1.625	1.00
112_T	115_S	1.619	1.00
50_L	285_Q	1.595	1.00
111_R	228_G	1.579	1.00
192_I	290_V	1.572	1.00
128_T	131_G	1.569	1.00
33_C	199_E	1.548	1.00
77_A	81_T	1.540	1.00
252_P	309_R	1.537	1.00
183_S	186_W	1.531	1.00
41_D	48_D	1.528	1.00
66_I	140_L	1.524	1.00
113_G	146_I	1.518	1.00
163_E	181_K	1.511	1.00
111_R	115_S	1.506	1.00
261_K	266_K	1.493	1.00
225_G	229_A	1.469	1.00
91_A	95_T	1.466	1.00
114_V	143_L	1.451	1.00
109_V	150_W	1.447	1.00
94_R	149_Y	1.445	1.00
154_S	340_E	1.441	1.00
74_D	78_A	1.438	1.00
82_K	137_D	1.420	1.00
188_K	192_I	1.419	1.00
56_C	195_V	1.413	1.00
184_Q	188_K	1.410	1.00
95_T	99_A	1.408	1.00
269_V	314_M	1.405	1.00
63_H	75_E	1.400	1.00
193_S	287_I	1.399	1.00
59_E	83_L	1.387	1.00
160_I	176_L	1.385	1.00
204_A	229_A	1.372	1.00
148_L	173_F	1.369	1.00
61_V	195_V	1.354	0.99
23_S	275_P	1.343	0.99
208_T	225_G	1.332	0.99
86_L	138_K	1.330	0.99
201_E	371_S	1.325	0.99
51_D	55_H	1.324	0.99
230_L	347_V	1.315	0.99
259_I	314_M	1.312	0.99
96_V	116_A	1.308	0.99
289_R	292_K	1.305	0.99
291_A	330_V	1.300	0.99
198_A	352_T	1.297	0.99
208_T	212_I	1.297	0.99
261_K	267_E	1.289	0.99
272_F	314_M	1.279	0.99
288_K	311_E	1.277	0.99
65_L	352_T	1.261	0.99
81_T	85_A	1.257	0.99
217_S	221_S	1.252	0.99
235_H	238_A	1.250	0.99
139_L	223_I	1.249	0.99
219_M	355_A	1.244	0.99
280_A	285_Q	1.240	0.99
131_G	135_I	1.230	0.99
251_T	302_K	1.224	0.99
296_Q	301_L	1.212	0.99
249_Y	262_R	1.210	0.99
221_S	231_R	1.209	0.99
45_R	68_G	1.208	0.99
135_I	219_M	1.200	0.99
50_L	286_V	1.199	0.99
208_T	211_V	1.187	0.99
333_N	339_T	1.176	0.99
37_K	40_N	1.174	0.99
145_S	162_P	1.173	0.99
29_N	375_V	1.172	0.99
60_E	382_F	1.171	0.99
162_P	176_L	1.163	0.98
251_T	254_E	1.154	0.98
163_E	167_D	1.152	0.98
66_I	355_A	1.152	0.98
107_M	239_N	1.152	0.98
29_N	373_N	1.151	0.98
209_S	358_I	1.148	0.98
47_Y	70_L	1.147	0.98
129_V	363_Q	1.144	0.98
87_R	169_I	1.133	0.98
77_A	80_K	1.130	0.98
44_Y	198_A	1.130	0.98
244_E	339_T	1.129	0.98
110_M	147_L	1.127	0.98
63_H	67_H	1.124	0.98
288_K	292_K	1.120	0.98
287_I	331_S	1.110	0.98
31_A	375_V	1.090	0.98
47_Y	64_L	1.089	0.98
191_H	195_V	1.088	0.98
290_V	293_Q	1.083	0.98
97_L	113_G	1.082	0.98
64_L	70_L	1.076	0.97
78_A	82_K	1.076	0.97
234_K	268_V	1.074	0.97
178_H	186_W	1.071	0.97
223_I	355_A	1.071	0.97
49_I	286_V	1.062	0.97
75_E	78_A	1.059	0.97
89_L	149_Y	1.054	0.97
82_K	134_D	1.049	0.97
87_R	164_T	1.049	0.97
58_F	352_T	1.045	0.97
56_C	60_E	1.042	0.97
252_P	312_T	1.037	0.97
359_I	363_Q	1.032	0.97
147_L	344_P	1.026	0.97
134_D	138_K	1.025	0.97
258_D	262_R	1.020	0.96
86_L	137_D	1.013	0.96
185_S	293_Q	1.012	0.96
44_Y	61_V	1.006	0.96
219_M	358_I	1.004	0.96
94_R	98_E	1.002	0.96
69_K	72_T	1.001	0.96
80_K	84_K	1.000	0.96
246_Q	310_L	0.999	0.96
151_Y	155_H	0.999	0.96
171_G	184_Q	0.998	0.96
307_A	329_A	0.996	0.96
249_Y	258_D	0.987	0.96
105_H	240_E	0.982	0.96
67_H	133_R	0.979	0.96
51_D	54_K	0.978	0.96
256_E	260_R	0.977	0.95
210_R	361_Q	0.974	0.95
74_D	77_A	0.971	0.95
249_Y	255_A	0.968	0.95
223_I	351_V	0.961	0.95
172_H	175_H	0.960	0.95
349_A	352_T	0.959	0.95
57_E	191_H	0.957	0.95
98_E	158_E	0.957	0.95
43_H	379_D	0.948	0.95
133_R	359_I	0.948	0.95
245_I	262_R	0.946	0.95
28_G	202_F	0.945	0.95
111_R	224_I	0.939	0.94
94_R	161_Q	0.939	0.94
167_D	172_H	0.935	0.94
288_K	308_D	0.934	0.94
65_L	198_A	0.934	0.94
188_K	293_Q	0.930	0.94
238_A	323_N	0.930	0.94
259_I	313_V	0.928	0.94
57_E	60_E	0.927	0.94
197_Y	324_L	0.925	0.94
97_L	153_Y	0.919	0.94
248_R	267_E	0.913	0.94
252_P	305_N	0.909	0.93
194_L	348_I	0.904	0.93
308_D	312_T	0.903	0.93
47_Y	52_L	0.901	0.93
247_Q	303_M	0.900	0.93
305_N	308_D	0.898	0.93
135_I	220_Y	0.890	0.93
217_S	222_A	0.887	0.93
227_I	347_V	0.882	0.92
215_T	367_I	0.882	0.92
83_L	137_D	0.882	0.92
200_H	277_Y	0.877	0.92
255_A	309_R	0.875	0.92
89_L	146_I	0.872	0.92
205_S	235_H	0.871	0.92
272_F	322_P	0.869	0.92
307_A	326_W	0.867	0.92
63_H	79_Y	0.864	0.92
188_K	290_V	0.863	0.91
126_G	131_G	0.860	0.91
33_C	201_E	0.859	0.91
202_F	371_S	0.858	0.91
170_G	187_E	0.856	0.91
250_E	302_K	0.855	0.91
301_L	305_N	0.853	0.91
291_A	307_A	0.853	0.91
88_G	161_Q	0.853	0.91
230_L	236_G	0.851	0.91
34_T	379_D	0.850	0.91
316_E	319_K	0.849	0.91
59_E	170_G	0.847	0.91
249_Y	310_L	0.847	0.91
250_E	253_D	0.843	0.91
136_A	359_I	0.841	0.90
20_V	364_D	0.836	0.90
52_L	61_V	0.836	0.90
100_L	116_A	0.835	0.90
32_L	45_R	0.834	0.90
153_Y	159_R	0.832	0.90
66_I	352_T	0.832	0.90
236_G	346_F	0.832	0.90
252_P	306_I	0.832	0.90
115_S	228_G	0.831	0.90
230_L	346_F	0.831	0.90
34_T	374_Y	0.825	0.90
132_A	135_I	0.824	0.89
167_D	187_E	0.823	0.89
96_V	99_A	0.821	0.89
186_W	294_L	0.821	0.89
216_G	234_K	0.820	0.89
207_F	368_I	0.818	0.89
239_N	325_D	0.815	0.89
253_D	257_A	0.812	0.89
82_K	86_L	0.805	0.88
235_H	325_D	0.804	0.88
207_F	211_V	0.803	0.88
280_A	288_K	0.802	0.88
170_G	190_M	0.802	0.88
140_L	169_I	0.801	0.88
241_V	244_E	0.796	0.88
62_A	140_L	0.790	0.87
145_S	176_L	0.790	0.87
86_L	134_D	0.789	0.87
257_A	260_R	0.788	0.87
100_L	119_C	0.786	0.87
160_I	179_G	0.784	0.87
222_A	358_I	0.783	0.87
76_L	80_K	0.769	0.86
292_K	304_Y	0.766	0.86
201_E	372_A	0.765	0.86
242_S	324_L	0.765	0.86
168_S	191_H	0.764	0.86
58_F	62_A	0.764	0.86
115_S	224_I	0.761	0.85
52_L	70_L	0.761	0.85
27_A	207_F	0.759	0.85
162_P	172_H	0.759	0.85
197_Y	239_N	0.756	0.85
290_V	331_S	0.755	0.85
156_N	159_R	0.754	0.85
235_H	346_F	0.754	0.85
44_Y	64_L	0.752	0.85
242_S	306_I	0.752	0.85
121_L	138_K	0.751	0.85
141_A	144_S	0.751	0.85
130_S	134_D	0.749	0.85
92_N	120_T	0.749	0.85
163_E	175_H	0.747	0.84
131_G	134_D	0.746	0.84
123_E	134_D	0.742	0.84
185_S	189_A	0.742	0.84
243_L	342_F	0.739	0.84
86_L	226_A	0.739	0.84
62_A	79_Y	0.734	0.83
246_Q	307_A	0.732	0.83
205_S	236_G	0.728	0.83
123_E	138_K	0.728	0.83
200_H	236_G	0.726	0.83
88_G	134_D	0.723	0.82
97_L	150_W	0.717	0.82
239_N	343_T	0.717	0.82
377_P	380_R	0.717	0.82
53_A	195_V	0.717	0.82
256_E	259_I	0.717	0.82
39_G	279_I	0.716	0.82
252_P	256_E	0.715	0.82
197_Y	328_S	0.715	0.82
260_R	317_S	0.715	0.82
291_A	331_S	0.715	0.82
148_L	176_L	0.715	0.82
262_R	265_N	0.713	0.81
212_I	222_A	0.711	0.81
245_I	258_D	0.709	0.81
170_G	194_L	0.706	0.81
93_V	97_L	0.704	0.81
42_L	49_I	0.703	0.81
238_A	273_G	0.700	0.80
248_R	262_R	0.696	0.80
93_V	113_G	0.695	0.80
36_G	39_G	0.694	0.80
243_L	339_T	0.693	0.80
287_I	328_S	0.691	0.79
93_V	116_A	0.688	0.79
60_E	70_L	0.688	0.79
254_E	261_K	0.687	0.79
244_E	247_Q	0.684	0.79
242_S	246_Q	0.684	0.79
255_A	313_V	0.682	0.79
255_A	306_I	0.682	0.79
58_F	191_H	0.682	0.79
303_M	333_N	0.680	0.78
96_V	100_L	0.679	0.78
61_V	198_A	0.677	0.78
347_V	354_W	0.677	0.78
256_E	316_E	0.676	0.78
249_Y	259_I	0.676	0.78
92_N	95_T	0.676	0.78
180_E	186_W	0.676	0.78
136_A	219_M	0.676	0.78
188_K	195_V	0.676	0.78
82_K	85_A	0.673	0.78
48_D	381_P	0.673	0.78
98_E	149_Y	0.671	0.77
19_S	25_V	0.671	0.77
230_L	239_N	0.669	0.77
218_D	221_S	0.669	0.77
57_E	188_K	0.668	0.77
206_T	357_H	0.668	0.77
34_T	37_K	0.664	0.77
30_T	33_C	0.664	0.77
269_V	318_K	0.664	0.77
160_I	175_H	0.664	0.77
149_Y	176_L	0.662	0.76
205_S	325_D	0.661	0.76
93_V	96_V	0.660	0.76
132_A	362_R	0.660	0.76
216_G	362_R	0.659	0.76
158_E	161_Q	0.658	0.76
123_E	126_G	0.656	0.76
304_Y	308_D	0.656	0.76
47_Y	69_K	0.656	0.76
305_N	309_R	0.653	0.76
110_M	227_I	0.653	0.76
78_A	81_T	0.650	0.75
121_L	135_I	0.649	0.75
252_P	255_A	0.647	0.75
43_H	48_D	0.645	0.75
194_L	349_A	0.645	0.75
186_W	298_G	0.643	0.74
182_P	187_E	0.641	0.74
22_L	25_V	0.641	0.74
37_K	279_I	0.638	0.74
138_K	142_S	0.638	0.74
192_I	195_V	0.638	0.74
56_C	191_H	0.636	0.74
337_V	341_M	0.634	0.73
200_H	346_F	0.633	0.73
167_D	175_H	0.633	0.73
34_T	39_G	0.632	0.73
275_P	278_T	0.629	0.73
24_G	207_F	0.629	0.73
83_L	141_A	0.628	0.73
257_A	264_E	0.628	0.73
200_H	203_N	0.627	0.73
262_R	266_K	0.626	0.72
152_H	155_H	0.625	0.72
118_G	218_D	0.623	0.72
59_E	169_I	0.621	0.72
291_A	304_Y	0.620	0.72
206_T	343_T	0.616	0.71
91_A	161_Q	0.615	0.71
295_S	304_Y	0.614	0.71
196_L	286_V	0.613	0.71
241_V	270_I	0.613	0.71
273_G	323_N	0.611	0.71
100_L	104_S	0.610	0.70
49_I	196_L	0.610	0.70
149_Y	159_R	0.608	0.70
261_K	264_E	0.607	0.70
357_H	365_N	0.607	0.70
193_S	197_Y	0.606	0.70
114_V	139_L	0.606	0.70
26_P	373_N	0.604	0.70
244_E	248_R	0.603	0.70
311_E	322_P	0.603	0.70
294_L	331_S	0.600	0.69
97_L	159_R	0.600	0.69
277_Y	354_W	0.599	0.69
170_G	174_L	0.599	0.69
203_N	277_Y	0.598	0.69
157_G	160_I	0.598	0.69
139_L	219_M	0.597	0.69
205_S	346_F	0.596	0.69
145_S	172_H	0.595	0.69
197_Y	325_D	0.595	0.69
351_V	355_A	0.594	0.68
143_L	146_I	0.594	0.68
36_G	41_D	0.593	0.68
33_C	43_H	0.591	0.68
62_A	66_I	0.588	0.68
268_V	367_I	0.588	0.68
324_L	328_S	0.587	0.68
247_Q	342_F	0.587	0.68
57_E	80_K	0.586	0.67
218_D	231_R	0.586	0.67
79_Y	83_L	0.586	0.67
274_H	346_F	0.585	0.67
57_E	62_A	0.584	0.67
193_S	345_L	0.582	0.67
216_G	233_P	0.582	0.67
202_F	210_R	0.580	0.67
30_T	357_H	0.580	0.67
174_L	187_E	0.580	0.67
259_I	306_I	0.580	0.67
96_V	112_T	0.579	0.67
280_A	321_F	0.578	0.66
145_S	148_L	0.578	0.66
243_L	333_N	0.578	0.66
288_K	327_F	0.577	0.66
152_H	163_E	0.577	0.66
288_K	304_Y	0.576	0.66
140_L	355_A	0.573	0.66
45_R	62_A	0.571	0.65
248_R	252_P	0.571	0.65
89_L	94_R	0.568	0.65
200_H	205_S	0.568	0.65
118_G	217_S	0.568	0.65
235_H	273_G	0.568	0.65
191_H	366_K	0.566	0.65
315_W	319_K	0.566	0.65
201_E	320_M	0.566	0.65
205_S	230_L	0.566	0.65
323_N	329_A	0.564	0.64
157_G	161_Q	0.564	0.64
239_N	342_F	0.562	0.64
47_Y	51_D	0.562	0.64
273_G	325_D	0.558	0.64
203_N	346_F	0.557	0.64
315_W	320_M	0.555	0.63
260_R	263_V	0.555	0.63
203_N	324_L	0.553	0.63
100_L	112_T	0.553	0.63
149_Y	153_Y	0.553	0.63
243_L	307_A	0.552	0.63
243_L	330_V	0.551	0.63
253_D	256_E	0.549	0.62
140_L	352_T	0.548	0.62
132_A	136_A	0.547	0.62
86_L	142_S	0.547	0.62
302_K	305_N	0.545	0.62
262_R	318_K	0.545	0.62
152_H	160_I	0.545	0.62
132_A	359_I	0.544	0.62
375_V	378_E	0.544	0.62
315_W	321_F	0.544	0.62
122_P	138_K	0.544	0.62
332_Y	342_F	0.544	0.62
22_L	26_P	0.544	0.62
329_A	346_F	0.544	0.62
73_R	76_L	0.543	0.62
167_D	182_P	0.542	0.61
28_G	368_I	0.542	0.61
129_V	359_I	0.542	0.61
121_L	362_R	0.538	0.61
326_W	342_F	0.537	0.61
34_T	43_H	0.537	0.61
245_I	249_Y	0.535	0.60
151_Y	154_S	0.534	0.60
213_A	362_R	0.533	0.60
156_N	162_P	0.533	0.60
358_I	372_A	0.533	0.60
18_K	26_P	0.531	0.60
22_L	207_F	0.530	0.60
260_R	313_V	0.528	0.59
27_A	211_V	0.528	0.59
292_K	312_T	0.528	0.59
260_R	316_E	0.527	0.59
189_A	294_L	0.527	0.59
203_N	274_H	0.526	0.59
52_L	64_L	0.526	0.59
47_Y	61_V	0.526	0.59
31_A	363_Q	0.525	0.59
177_L	341_M	0.525	0.59
203_N	235_H	0.523	0.59
166_D	181_K	0.522	0.59
113_G	116_A	0.520	0.58
73_R	184_Q	0.518	0.58
199_E	355_A	0.518	0.58
324_L	331_S	0.518	0.58
91_A	166_D	0.516	0.58
210_R	216_G	0.516	0.58
64_L	198_A	0.515	0.58
47_Y	55_H	0.515	0.58
174_L	190_M	0.515	0.58
206_T	210_R	0.514	0.57
142_S	145_S	0.514	0.57
73_R	180_E	0.511	0.57
33_C	37_K	0.510	0.57
325_D	346_F	0.510	0.57
199_E	349_A	0.509	0.57
287_I	332_Y	0.509	0.57
233_P	238_A	0.509	0.57
294_L	338_P	0.508	0.57
152_H	156_N	0.507	0.56
24_G	35_V	0.507	0.56
270_I	320_M	0.506	0.56
210_R	246_Q	0.505	0.56
376_G	380_R	0.505	0.56
289_R	312_T	0.504	0.56
80_K	83_L	0.503	0.56
147_L	227_I	0.501	0.56
36_G	43_H	0.501	0.56
98_E	153_Y	0.501	0.56
90_P	101_P	0.501	0.56
148_L	152_H	0.500	0.55
62_A	210_R	0.500	0.55

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2h12A	4	0.9949	100	0.062	Contact Map
4xghA	5	0.91	100	0.063	Contact Map
2ibpA	2	0.9871	100	0.069	Contact Map
3o8jA	3	0.9357	100	0.07	Contact Map
1iomA	2	0.9512	100	0.076	Contact Map
4tvmA	2	0.8972	100	0.079	Contact Map
4jadA	5	0.9923	100	0.081	Contact Map
1o7xA	2	0.9357	100	0.082	Contact Map
3tqgA	2	0.9306	100	0.082	Contact Map
3hwkA	5	0.9434	100	0.083	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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