CAIC - ECOLI - GREMLIN Contacts

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CAIC - Probable crotonobetaine/carnitine-CoA ligase

UniProt:	P31552	Sequences: MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLCEESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDQQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11558
Length:	517 (481)
Sequences:	71543 (51304)
Seq/√Len:	2339.2

ECOLI - CAIC ENTF ACSA AAS LCFA FADK PRPE ENTE MENE PAAK
BACSU - SRFAC PPSE ACSA LCFB YNGI LCFA DHBE YDAB YTCI MENE PPSB PPSC DLTA YHFT DHBF PKSJ PPSD PKSN SRFAA SRFAB PPSA
HALSA - Q9HRY8 Q9HQU8 Q9HSM3 Q9HQ43 Q9HNK0 Q9HQN8
SULSO - Q97UX8 Q97YK9 Q97UW7 Q97VT6 Q97U22 Q97WQ9 Q97XW4 Q97WQ0 Q97VU7 Q97UF6 Q97WK0 Q97V27 Q97WS5 Q980E4 Q97X52 Q97XW5 Q97VJ6 Q97WU3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
175_T	192_V	3.908	1.00
369_I	406_G	3.178	1.00
443_H	483_F	3.124	1.00
48_N	84_K	2.925	1.00
350_E	372_K	2.920	1.00
386_N	389_A	2.911	1.00
107_N	180_F	2.895	1.00
66_A	110_A	2.767	1.00
194_T	381_K	2.750	1.00
63_D	111_C	2.747	1.00
59_I	87_A	2.734	1.00
44_N	84_K	2.705	1.00
407_Y	415_Y	2.700	1.00
27_I	242_T	2.574	1.00
368_E	401_H	2.492	1.00
425_K	430_N	2.449	1.00
216_V	242_T	2.418	1.00
24_T	37_R	2.394	1.00
448_D	505_R	2.378	1.00
109_Q	385_L	2.359	1.00
64_K	90_V	2.356	1.00
441_A	449_I	2.299	1.00
20_Y	23_K	2.298	1.00
53_L	57_L	2.267	1.00
14_D	44_N	2.257	1.00
354_R	370_C	2.253	1.00
352_E	360_P	2.219	1.00
366_I	405_T	2.214	1.00
440_I	465_A	2.191	1.00
355_D	359_R	2.178	1.00
107_N	386_N	2.149	1.00
78_C	114_V	2.145	1.00
46_E	77_F	2.141	1.00
16_L	20_Y	2.131	1.00
103_W	187_R	2.113	1.00
370_C	401_H	2.091	1.00
256_G	260_K	2.064	1.00
409_D	415_Y	2.064	1.00
44_N	48_N	2.040	1.00
389_A	392_K	2.036	1.00
464_K	498_E	2.034	1.00
28_C	73_P	2.032	1.00
442_A	487_N	2.017	1.00
171_S	174_D	1.990	1.00
215_D	291_R	1.981	1.00
82_L	87_A	1.975	1.00
341_S	415_Y	1.961	1.00
422_N	513_R	1.907	1.00
50_T	77_F	1.892	1.00
512_I	515_N	1.886	1.00
409_D	413_F	1.881	1.00
387_P	391_A	1.881	1.00
61_K	174_D	1.859	1.00
215_D	264_T	1.857	1.00
407_Y	417_V	1.855	1.00
301_E	305_D	1.845	1.00
22_H	41_L	1.836	1.00
27_I	37_R	1.831	1.00
111_C	135_R	1.818	1.00
352_E	370_C	1.814	1.00
102_A	106_Q	1.811	1.00
55_Y	85_I	1.774	1.00
60_R	63_D	1.770	1.00
62_G	174_D	1.766	1.00
435_E	492_K	1.751	1.00
47_I	84_K	1.741	1.00
408_R	414_F	1.726	1.00
27_I	261_Y	1.701	1.00
262_R	289_R	1.689	1.00
41_L	45_Q	1.685	1.00
244_V	263_A	1.677	1.00
366_I	417_V	1.672	1.00
426_R	431_V	1.668	1.00
447_Q	470_N	1.664	1.00
70_D	116_S	1.656	1.00
437_E	451_V	1.655	1.00
441_A	448_D	1.654	1.00
15_D	19_V	1.654	1.00
194_T	197_N	1.642	1.00
452_V	466_F	1.639	1.00
363_A	408_R	1.627	1.00
76_I	233_A	1.590	1.00
175_T	381_K	1.580	1.00
39_S	42_E	1.568	1.00
66_A	92_I	1.562	1.00
83_A	176_A	1.560	1.00
451_V	465_A	1.542	1.00
353_I	406_G	1.532	1.00
388_Q	392_K	1.526	1.00
268_C	273_I	1.518	1.00
468_V	503_L	1.513	1.00
38_Y	77_F	1.508	1.00
253_A	256_G	1.507	1.00
236_A	241_A	1.499	1.00
48_N	52_N	1.498	1.00
445_K	479_E	1.492	1.00
64_K	88_I	1.491	1.00
16_L	19_V	1.487	1.00
180_F	190_G	1.487	1.00
439_I	487_N	1.482	1.00
53_L	156_L	1.476	1.00
328_I	371_I	1.467	1.00
206_A	239_A	1.464	1.00
65_V	82_L	1.463	1.00
24_T	27_I	1.460	1.00
14_D	84_K	1.457	1.00
23_K	214_D	1.457	1.00
108_S	180_F	1.455	1.00
483_F	487_N	1.452	1.00
21_G	41_L	1.450	1.00
173_D	196_Y	1.445	1.00
467_V	499_I	1.439	1.00
478_E	482_R	1.434	1.00
24_T	242_T	1.427	1.00
271_M	297_L	1.427	1.00
362_P	365_E	1.424	1.00
197_N	325_I	1.423	1.00
406_G	416_F	1.418	1.00
469_L	499_I	1.418	1.00
17_A	44_N	1.418	1.00
321_M	400_L	1.416	1.00
305_D	309_E	1.414	1.00
178_I	384_F	1.412	1.00
207_W	347_F	1.405	1.00
338_R	411_E	1.396	1.00
314_R	332_R	1.393	1.00
218_L	263_A	1.388	1.00
38_Y	73_P	1.384	1.00
455_K	461_E	1.382	1.00
105_L	110_A	1.371	1.00
192_V	384_F	1.366	1.00
192_V	382_E	1.365	1.00
259_Q	285_D	1.364	1.00
506_N	512_I	1.364	1.00
215_D	265_V	1.361	1.00
481_F	497_L	1.358	1.00
25_A	43_L	1.355	1.00
351_A	371_I	1.353	1.00
66_A	105_L	1.351	1.00
372_K	399_W	1.350	1.00
65_V	87_A	1.340	1.00
329_I	351_A	1.340	1.00
380_F	394_L	1.339	1.00
28_C	36_N	1.335	1.00
467_V	497_L	1.330	1.00
216_V	244_V	1.327	1.00
250_S	253_A	1.326	1.00
393_V	400_L	1.315	1.00
405_T	420_R	1.313	1.00
172_T	196_Y	1.312	1.00
212_R	215_D	1.311	1.00
107_N	385_L	1.310	1.00
90_V	108_S	1.308	1.00
366_I	407_Y	1.306	1.00
476_S	479_E	1.306	1.00
355_D	361_L	1.303	1.00
257_Q	261_Y	1.302	1.00
273_I	293_V	1.299	1.00
246_V	257_Q	1.297	1.00
466_F	500_R	1.288	1.00
62_G	381_K	1.286	1.00
50_T	81_G	1.276	1.00
482_R	486_Q	1.275	1.00
344_R	413_F	1.270	1.00
456_D	462_A	1.270	1.00
64_K	178_I	1.269	1.00
98_C	122_M	1.268	1.00
152_S	155_Q	1.264	1.00
424_I	433_C	1.259	1.00
80_F	237_F	1.256	1.00
448_D	468_V	1.255	1.00
59_I	63_D	1.250	1.00
64_K	384_F	1.247	1.00
464_K	496_Y	1.246	1.00
485_E	493_V	1.241	1.00
88_I	175_T	1.238	1.00
196_Y	377_K	1.237	1.00
338_R	413_F	1.236	1.00
59_I	65_V	1.232	1.00
454_I	464_K	1.227	1.00
103_W	107_N	1.222	1.00
466_F	516_L	1.216	1.00
67_L	78_C	1.213	1.00
107_N	187_R	1.212	1.00
295_F	299_L	1.205	1.00
352_E	399_W	1.202	1.00
98_C	125_Q	1.201	1.00
266_T	290_L	1.201	1.00
222_P	225_H	1.201	1.00
46_E	49_R	1.195	1.00
216_V	263_A	1.195	1.00
98_C	102_A	1.193	1.00
81_G	85_I	1.189	1.00
29_E	247_E	1.182	1.00
434_V	438_N	1.179	1.00
345_V	351_A	1.177	1.00
481_F	485_E	1.175	1.00
361_L	365_E	1.172	1.00
178_I	190_G	1.171	1.00
192_V	381_K	1.171	1.00
45_Q	49_R	1.171	1.00
37_R	261_Y	1.171	1.00
483_F	486_Q	1.168	1.00
368_E	420_R	1.161	1.00
485_E	490_K	1.161	1.00
258_V	289_R	1.161	1.00
369_I	416_F	1.159	1.00
422_N	434_V	1.156	1.00
278_V	306_A	1.156	1.00
170_L	174_D	1.149	1.00
453_G	461_E	1.148	1.00
307_F	311_F	1.143	1.00
462_A	495_S	1.140	1.00
43_L	80_F	1.136	1.00
44_N	165_C	1.135	1.00
331_D	413_F	1.133	1.00
356_D	420_R	1.132	1.00
429_E	491_F	1.128	1.00
181_T	191_V	1.117	1.00
25_A	40_Y	1.115	1.00
106_Q	187_R	1.108	1.00
465_A	497_L	1.107	1.00
193_I	197_N	1.104	1.00
53_L	56_T	1.104	1.00
92_I	101_S	1.100	1.00
36_N	73_P	1.095	1.00
46_E	74_E	1.093	1.00
38_Y	46_E	1.088	1.00
42_E	45_Q	1.088	1.00
14_D	48_N	1.083	1.00
265_V	292_E	1.083	1.00
484_C	493_V	1.081	1.00
277_M	306_A	1.075	1.00
252_R	279_Q	1.073	1.00
68_H	101_S	1.071	1.00
274_R	303_E	1.067	1.00
500_R	503_L	1.063	1.00
462_A	496_Y	1.062	1.00
29_E	36_N	1.060	1.00
173_D	194_T	1.060	1.00
59_I	112_L	1.059	1.00
27_I	244_V	1.058	1.00
469_L	475_L	1.051	1.00
244_V	257_Q	1.050	1.00
197_N	379_I	1.050	1.00
349_Y	378_T	1.046	1.00
43_L	77_F	1.043	1.00
51_A	84_K	1.042	1.00
300_S	303_E	1.041	1.00
50_T	114_V	1.039	1.00
370_C	399_W	1.037	1.00
75_F	223_A	1.035	1.00
443_H	480_F	1.033	1.00
389_A	393_V	1.033	1.00
57_L	136_H	1.032	1.00
342_I	416_F	1.031	1.00
244_V	261_Y	1.031	1.00
454_I	496_Y	1.027	1.00
423_M	432_S	1.026	1.00
216_V	264_T	1.021	1.00
120_Y	124_Q	1.020	1.00
117_A	141_D	1.020	1.00
136_H	140_T	1.017	1.00
306_A	310_R	1.011	1.00
100_E	492_K	1.007	1.00
47_I	81_G	1.006	1.00
427_G	459_R	1.000	1.00
439_I	442_A	1.000	1.00
503_L	511_I	0.999	1.00
215_D	241_A	0.999	1.00
479_E	482_R	0.994	1.00
489_A	492_K	0.990	1.00
182_S	508_S	0.990	1.00
217_Y	236_A	0.986	1.00
63_D	87_A	0.985	1.00
191_V	380_F	0.983	1.00
395_E	401_H	0.979	1.00
56_T	159_Q	0.978	1.00
447_Q	468_V	0.977	1.00
331_D	341_S	0.976	1.00
23_K	242_T	0.975	1.00
353_I	361_L	0.975	1.00
371_I	402_T	0.973	1.00
329_I	414_F	0.973	1.00
373_G	379_I	0.972	1.00
103_W	180_F	0.971	1.00
439_I	484_C	0.970	1.00
38_Y	43_L	0.964	1.00
24_T	39_S	0.956	1.00
450_V	503_L	0.956	1.00
99_E	487_N	0.953	1.00
372_K	397_D	0.950	1.00
200_F	348_C	0.948	1.00
351_A	414_F	0.944	1.00
424_I	463_I	0.943	1.00
64_K	109_Q	0.943	1.00
54_F	82_L	0.940	1.00
26_L	76_I	0.939	1.00
179_L	322_T	0.936	1.00
13_W	17_A	0.935	1.00
53_L	160_Q	0.935	1.00
96_L	104_I	0.934	1.00
351_A	369_I	0.934	1.00
477_E	497_L	0.934	1.00
405_T	418_D	0.933	1.00
50_T	78_C	0.931	1.00
299_L	304_K	0.930	1.00
200_F	377_K	0.929	1.00
201_A	326_V	0.925	1.00
341_S	413_F	0.923	1.00
36_N	46_E	0.922	1.00
302_Q	306_A	0.917	1.00
477_E	499_I	0.917	1.00
99_E	102_A	0.912	1.00
69_L	72_C	0.912	1.00
426_R	453_G	0.911	1.00
275_T	458_I	0.910	1.00
274_R	300_S	0.908	1.00
443_H	479_E	0.908	1.00
112_L	136_H	0.900	1.00
193_I	325_I	0.897	1.00
99_E	103_W	0.896	1.00
52_N	161_P	0.894	1.00
103_W	106_Q	0.894	1.00
236_A	243_F	0.891	1.00
57_L	112_L	0.890	1.00
10_R	170_L	0.889	1.00
249_Y	272_M	0.889	1.00
66_A	113_L	0.888	1.00
306_A	309_E	0.888	1.00
79_W	229_Q	0.888	1.00
202_G	238_S	0.885	1.00
442_A	483_F	0.885	1.00
218_L	246_V	0.885	1.00
43_L	47_I	0.885	1.00
73_P	77_F	0.884	1.00
56_T	160_Q	0.875	1.00
52_N	55_Y	0.873	1.00
437_E	513_R	0.871	1.00
353_I	414_F	0.870	1.00
273_I	307_F	0.866	1.00
69_L	140_T	0.865	1.00
79_W	89_M	0.864	1.00
482_R	485_E	0.863	1.00
267_E	327_G	0.861	1.00
355_D	365_E	0.860	1.00
103_W	386_N	0.859	1.00
55_Y	60_R	0.857	1.00
55_Y	166_Y	0.857	1.00
59_I	85_I	0.857	1.00
70_D	118_Q	0.856	1.00
67_L	89_M	0.856	1.00
52_N	166_Y	0.855	1.00
479_E	483_F	0.850	1.00
44_N	47_I	0.850	1.00
116_S	119_F	0.844	1.00
358_N	370_C	0.843	1.00
338_R	409_D	0.843	1.00
386_N	390_T	0.843	1.00
455_K	458_I	0.843	1.00
480_F	497_L	0.836	1.00
369_I	414_F	0.835	1.00
51_A	85_I	0.834	1.00
27_I	216_V	0.831	1.00
74_E	77_F	0.831	1.00
54_F	114_V	0.830	1.00
176_A	195_H	0.830	1.00
214_D	264_T	0.829	1.00
15_D	18_D	0.829	1.00
82_L	89_M	0.827	1.00
26_L	73_P	0.826	1.00
373_G	378_T	0.823	1.00
30_S	36_N	0.822	1.00
42_E	46_E	0.819	1.00
76_I	245_L	0.816	1.00
426_R	495_S	0.815	1.00
259_Q	286_Q	0.812	1.00
193_I	380_F	0.812	1.00
12_M	203_Y	0.800	1.00
12_M	16_L	0.800	1.00
292_E	316_L	0.799	1.00
14_D	18_D	0.798	1.00
294_M	318_S	0.798	1.00
121_P	124_Q	0.798	1.00
445_K	470_N	0.794	1.00
66_A	90_V	0.792	1.00
324_T	400_L	0.790	1.00
45_Q	163_T	0.790	1.00
280_P	284_N	0.788	1.00
23_K	213_D	0.788	1.00
364_G	410_E	0.787	1.00
175_T	194_T	0.786	1.00
46_E	73_P	0.785	1.00
13_W	80_F	0.784	1.00
220_V	272_M	0.781	1.00
216_V	262_R	0.780	1.00
137_I	140_T	0.779	1.00
324_T	379_I	0.775	1.00
36_N	74_E	0.774	1.00
264_T	291_R	0.768	1.00
388_Q	391_A	0.765	1.00
285_D	288_H	0.765	1.00
24_T	28_C	0.764	1.00
351_A	406_G	0.762	1.00
77_F	81_G	0.762	1.00
269_I	272_M	0.760	1.00
281_P	306_A	0.760	1.00
252_R	256_G	0.755	1.00
10_R	195_H	0.753	1.00
11_Q	15_D	0.753	1.00
43_L	76_I	0.751	1.00
372_K	398_G	0.751	1.00
394_L	401_H	0.749	1.00
445_K	469_L	0.749	1.00
82_L	85_I	0.749	1.00
356_D	368_E	0.746	1.00
481_F	493_V	0.745	1.00
468_V	502_D	0.744	1.00
455_K	459_R	0.742	1.00
10_R	83_A	0.742	1.00
422_N	437_E	0.741	1.00
354_R	360_P	0.740	1.00
324_T	371_I	0.740	1.00
273_I	295_F	0.740	1.00
104_I	190_G	0.739	1.00
225_H	429_E	0.739	1.00
170_L	195_H	0.738	1.00
228_C	267_E	0.735	1.00
77_F	153_F	0.734	1.00
99_E	187_R	0.733	1.00
90_V	110_A	0.732	1.00
177_E	193_I	0.732	1.00
350_E	399_W	0.732	1.00
49_R	53_L	0.732	1.00
79_W	83_A	0.729	1.00
406_G	414_F	0.723	1.00
201_A	325_I	0.723	1.00
352_E	372_K	0.722	1.00
69_L	75_F	0.722	1.00
396_A	401_H	0.721	1.00
11_Q	14_D	0.721	1.00
366_I	420_R	0.721	1.00
401_H	420_R	0.721	1.00
455_K	460_D	0.720	1.00
302_Q	305_D	0.720	1.00
440_I	449_I	0.720	1.00
155_Q	158_N	0.719	1.00
390_T	394_L	0.719	1.00
176_A	198_L	0.718	1.00
253_A	257_Q	0.715	1.00
206_A	235_A	0.710	1.00
274_R	306_A	0.708	1.00
52_N	163_T	0.707	1.00
68_H	119_F	0.706	1.00
68_H	113_L	0.705	1.00
484_C	488_M	0.705	1.00
256_G	259_Q	0.705	1.00
274_R	278_V	0.704	1.00
292_E	314_R	0.702	1.00
318_S	327_G	0.702	1.00
478_E	481_F	0.701	1.00
290_L	293_V	0.699	1.00
157_K	160_Q	0.699	1.00
72_C	116_S	0.699	1.00
22_H	39_S	0.696	1.00
363_A	410_E	0.695	1.00
66_A	108_S	0.695	1.00
20_Y	41_L	0.694	1.00
221_M	228_C	0.693	1.00
113_L	123_Y	0.692	1.00
246_V	254_F	0.692	1.00
450_V	511_I	0.692	1.00
324_T	328_I	0.689	1.00
258_V	263_A	0.688	1.00
60_R	87_A	0.688	1.00
78_C	82_L	0.685	1.00
211_L	265_V	0.685	1.00
122_M	125_Q	0.685	1.00
299_L	315_L	0.684	1.00
51_A	81_G	0.684	1.00
13_W	44_N	0.683	1.00
10_R	14_D	0.679	1.00
317_T	340_P	0.679	1.00
267_E	318_S	0.678	1.00
230_C	326_V	0.678	1.00
212_R	291_R	0.677	1.00
439_I	483_F	0.677	1.00
466_F	498_E	0.676	1.00
490_K	493_V	0.676	1.00
50_T	54_F	0.673	1.00
16_L	240_G	0.671	1.00
37_R	242_T	0.670	1.00
426_R	463_I	0.670	1.00
477_E	481_F	0.670	1.00
434_V	437_E	0.669	1.00
138_C	142_V	0.669	1.00
454_I	462_A	0.668	1.00
433_C	513_R	0.667	1.00
55_Y	168_P	0.667	1.00
60_R	111_C	0.666	1.00
406_G	417_V	0.664	1.00
308_C	335_D	0.664	1.00
447_Q	469_L	0.662	1.00
433_C	451_V	0.660	1.00
109_Q	384_F	0.658	1.00
79_W	234_M	0.658	1.00
115_T	119_F	0.658	1.00
201_A	327_G	0.657	1.00
227_D	267_E	0.654	1.00
65_V	112_L	0.653	1.00
218_L	257_Q	0.652	1.00
17_A	21_G	0.652	1.00
293_V	307_F	0.651	1.00
316_L	332_R	0.650	1.00
220_V	269_I	0.650	1.00
119_F	122_M	0.649	1.00
353_I	408_R	0.649	1.00
467_V	480_F	0.649	1.00
346_G	349_Y	0.649	1.00
231_T	267_E	0.647	1.00
208_Q	347_F	0.646	1.00
274_R	302_Q	0.645	1.00
49_R	161_P	0.645	1.00
69_L	114_V	0.642	1.00
319_Y	328_I	0.641	1.00
50_T	53_L	0.640	1.00
96_L	225_H	0.639	1.00
258_V	266_T	0.638	1.00
446_I	467_V	0.637	1.00
46_E	157_K	0.637	1.00
97_L	100_E	0.636	1.00
197_N	381_K	0.635	1.00
107_N	384_F	0.635	1.00
379_I	400_L	0.632	1.00
123_Y	126_I	0.630	1.00
80_F	234_M	0.627	1.00
173_D	381_K	0.625	1.00
447_Q	471_E	0.624	1.00
28_C	247_E	0.624	1.00
52_N	160_Q	0.624	1.00
40_Y	241_A	0.624	1.00
232_A	267_E	0.624	1.00
456_D	459_R	0.623	1.00
52_N	164_L	0.622	1.00
217_Y	265_V	0.621	1.00
55_Y	165_C	0.620	1.00
283_A	310_R	0.619	1.00
58_G	87_A	0.619	1.00
61_K	170_L	0.619	1.00
12_M	199_R	0.618	1.00
48_N	164_L	0.618	1.00
48_N	165_C	0.617	1.00
61_K	168_P	0.616	1.00
20_Y	240_G	0.616	1.00
475_L	480_F	0.616	1.00
219_T	232_A	0.615	1.00
38_Y	42_E	0.614	1.00
342_I	406_G	0.613	1.00
426_R	459_R	0.613	1.00
165_C	168_P	0.612	1.00
421_C	461_E	0.612	1.00
446_I	449_I	0.611	1.00
47_I	51_A	0.608	1.00
353_I	369_I	0.607	1.00
49_R	163_T	0.606	1.00
69_L	78_C	0.604	1.00
450_V	513_R	0.604	1.00
281_P	284_N	0.604	1.00
321_M	324_T	0.603	1.00
249_Y	254_F	0.603	1.00
124_Q	127_Q	0.602	1.00
218_L	258_V	0.602	1.00
26_L	243_F	0.601	1.00
440_I	484_C	0.601	1.00
47_I	50_T	0.600	1.00
90_V	180_F	0.599	1.00
259_Q	288_H	0.599	1.00
308_C	314_R	0.598	1.00
64_K	385_L	0.597	1.00
54_F	112_L	0.596	1.00
55_Y	167_A	0.596	1.00
115_T	137_I	0.596	1.00
259_Q	289_R	0.595	1.00
202_G	234_M	0.594	1.00
79_W	233_A	0.594	1.00
74_E	116_S	0.590	1.00
52_N	165_C	0.589	1.00
187_R	386_N	0.589	1.00
115_T	120_Y	0.588	1.00
242_T	261_Y	0.587	1.00
221_M	267_E	0.587	1.00
107_N	190_G	0.587	1.00
380_F	393_V	0.586	1.00
88_I	178_I	0.586	1.00
12_M	238_S	0.586	1.00
211_L	241_A	0.585	1.00
69_L	116_S	0.585	1.00
386_N	392_K	0.584	1.00
91_P	179_L	0.584	1.00
254_F	258_V	0.584	1.00
18_D	44_N	0.583	1.00
227_D	321_M	0.582	1.00
256_G	285_D	0.581	1.00
354_R	399_W	0.578	1.00
448_D	503_L	0.578	1.00
433_C	453_G	0.577	1.00
298_N	416_F	0.576	1.00
88_I	384_F	0.575	1.00
438_N	442_A	0.575	1.00
321_M	402_T	0.574	1.00
68_H	123_Y	0.574	1.00
115_T	123_Y	0.573	1.00
186_S	432_S	0.572	1.00
201_A	231_T	0.571	1.00
68_H	122_M	0.571	1.00
439_I	488_M	0.570	1.00
49_R	52_N	0.570	1.00
279_Q	283_A	0.569	1.00
303_E	306_A	0.568	1.00
211_L	215_D	0.568	1.00
69_L	115_T	0.567	1.00
203_Y	238_S	0.567	1.00
360_P	370_C	0.563	1.00
125_Q	128_Q	0.563	1.00
24_T	216_V	0.563	1.00
20_Y	213_D	0.561	1.00
67_L	82_L	0.561	1.00
299_L	317_T	0.560	1.00
178_I	192_V	0.560	1.00
177_E	198_L	0.560	1.00
50_T	153_F	0.559	1.00
117_A	142_V	0.559	1.00
307_F	315_L	0.558	1.00
418_D	433_C	0.556	1.00
219_T	243_F	0.556	1.00
257_Q	260_K	0.556	1.00
100_E	435_E	0.556	1.00
216_V	219_T	0.555	1.00
426_R	461_E	0.555	1.00
266_T	293_V	0.555	1.00
454_I	466_F	0.553	1.00
305_D	308_C	0.553	1.00
481_F	484_C	0.553	1.00
443_H	446_I	0.552	1.00
371_I	379_I	0.552	1.00
292_E	295_F	0.551	1.00
436_L	463_I	0.551	1.00
293_V	313_V	0.551	1.00
493_V	497_L	0.550	1.00
48_N	55_Y	0.550	1.00
270_P	297_L	0.549	1.00
64_K	110_A	0.548	1.00
53_L	157_K	0.548	1.00
67_L	75_F	0.547	1.00
108_S	190_G	0.546	1.00
329_I	342_I	0.543	1.00
115_T	139_L	0.542	1.00
424_I	453_G	0.542	1.00
382_E	387_P	0.542	1.00
445_K	483_F	0.541	1.00
201_A	205_S	0.539	1.00
174_D	195_H	0.538	1.00
220_V	268_C	0.538	1.00
360_P	408_R	0.538	1.00
121_P	125_Q	0.537	1.00
13_W	16_L	0.536	1.00
203_Y	206_A	0.534	1.00
437_E	465_A	0.534	1.00
219_T	245_L	0.530	1.00
10_R	84_K	0.530	1.00
217_Y	241_A	0.530	1.00
255_W	287_Q	0.529	1.00
449_I	484_C	0.529	1.00
370_C	395_E	0.529	1.00
387_P	390_T	0.528	1.00
59_I	111_C	0.528	1.00
11_Q	169_P	0.528	1.00
27_I	30_S	0.526	1.00
177_E	229_Q	0.525	1.00
203_Y	207_W	0.524	1.00
295_F	315_L	0.524	1.00
365_E	407_Y	0.523	1.00
440_I	451_V	0.521	1.00
425_K	432_S	0.520	1.00
350_E	397_D	0.520	1.00
54_F	87_A	0.519	1.00
108_S	178_I	0.519	1.00
364_G	407_Y	0.518	1.00
92_I	105_L	0.516	1.00
318_S	330_G	0.516	1.00
394_L	400_L	0.516	1.00
211_L	235_A	0.513	1.00
258_V	262_R	0.513	1.00
46_E	50_T	0.511	1.00
202_G	235_A	0.509	1.00
438_N	441_A	0.509	1.00
228_C	232_A	0.509	1.00
40_Y	237_F	0.509	1.00
275_T	278_V	0.509	1.00
502_D	505_R	0.509	1.00
88_I	91_P	0.508	1.00
422_N	433_C	0.508	1.00
354_R	358_N	0.507	1.00
254_F	272_M	0.507	1.00
450_V	516_L	0.507	1.00
26_L	38_Y	0.506	1.00
226_I	326_V	0.506	1.00
49_R	160_Q	0.506	1.00
204_Y	346_G	0.506	1.00
353_I	367_G	0.506	1.00
90_V	104_I	0.504	1.00
395_E	398_G	0.504	1.00
62_G	87_A	0.504	1.00
185_T	189_K	0.503	1.00
280_P	310_R	0.502	1.00
103_W	108_S	0.502	1.00
304_K	317_T	0.502	1.00
331_D	334_G	0.502	1.00
255_W	276_L	0.502	1.00
390_T	393_V	0.502	1.00
361_L	364_G	0.501	1.00
229_Q	233_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tsyA	2	0.7988	100	0.096	Contact Map
1mdbA	1	0.9652	100	0.104	Contact Map
3ni2A	1	0.9749	100	0.105	Contact Map
3o83A	1	0.7911	100	0.107	Contact Map
3etcA	2	0.9652	100	0.107	Contact Map
3g7sA	2	0.9052	100	0.112	Contact Map
2d1sA	1	0.9826	100	0.115	Contact Map
1v25A	2	0.9188	100	0.119	Contact Map
3rixA	1	0.7834	100	0.121	Contact Map
2v7bA	1	0.9323	100	0.122	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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