GREMLIN Database
THIP - Thiamine transport system permease protein ThiP
UniProt: P31549 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11573
Length: 536 (503)
Sequences: 4214 (3115)
Seq/√Len: 138.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
439_C449_R5.8991.00
313_G318_L5.1601.00
175_Q441_S4.6961.00
69_L147_V4.5121.00
173_A183_F4.1981.00
284_R288_R4.1411.00
448_S451_K3.9971.00
284_R287_S3.8841.00
65_L143_L3.7421.00
181_W185_R3.6731.00
332_W336_R3.4961.00
67_A200_A3.4781.00
427_P461_P3.3661.00
182_H186_F3.3341.00
35_W43_W3.3011.00
65_L139_L3.2681.00
344_L413_A2.9711.00
448_S452_V2.9211.00
334_S474_I2.9181.00
57_R61_W2.8731.00
176_L442_L2.8061.00
343_V466_L2.7951.00
74_A154_A2.7721.00
91_A95_L2.7711.00
444_I448_S2.7461.00
444_I452_V2.6911.00
179_R182_H2.6081.00
283_D287_S2.6001.00
342_G466_L2.5211.00
316_R319_P2.4971.00
284_R289_I2.4591.00
83_R170_R2.4251.00
445_E448_S2.4131.00
259_L263_R2.3811.00
71_V200_A2.3411.00
282_D286_H2.3391.00
171_Q437_M2.3221.00
340_A409_I2.2071.00
178_M444_I2.2031.00
154_A203_I2.1681.00
61_W139_L2.1621.00
211_F231_Y2.1471.00
139_L143_L2.1351.00
182_H185_R2.1091.00
178_M186_F2.0671.00
154_A158_L2.0571.00
285_L289_I2.0491.00
186_F452_V2.0371.00
365_M368_G2.0361.00
53_W57_R2.0051.00
173_A187_V2.0051.00
63_A204_F2.0031.00
177_G443_G1.9971.00
284_R290_C1.9861.00
305_P309_V1.9321.00
299_L303_L1.9191.00
350_M462_L1.8911.00
75_I158_L1.8861.00
283_D286_H1.8801.00
74_A158_L1.8721.00
336_R340_A1.8551.00
285_L288_R1.8471.00
154_A199_V1.8151.00
439_C444_I1.8061.00
27_A31_F1.7951.00
54_H57_R1.7791.00
75_I192_L1.7691.00
85_R89_R1.7671.00
337_I409_I1.7671.00
297_L301_L1.7551.00
170_R188_E1.7171.00
43_W46_V1.7051.00
341_A473_S1.6971.00
161_A195_Q1.6911.00
239_D242_R1.6861.00
178_M182_H1.6691.00
180_S183_F1.6651.00
26_V393_L1.6631.00
338_A342_G1.6611.00
336_R339_L1.6371.00
282_D287_S1.6241.00
353_L428_M1.6121.00
310_I512_L1.6091.00
349_T420_A1.6011.00
55_V229_A1.5931.00
80_A290_C1.5901.00
431_I458_L1.5851.00
514_L518_C1.5731.00
143_L147_V1.5601.00
21_T25_A1.5491.00
27_A32_L1.5471.00
65_L147_V1.5221.00
511_A514_L1.5121.00
70_S147_V1.5071.00
339_L343_V1.5051.00
31_F389_G1.5021.00
256_G260_L1.4911.00
174_A440_Q1.4881.00
41_D44_V1.4871.00
517_L521_L1.4841.00
338_A474_I1.4831.00
62_Q139_L1.4831.00
28_L32_L1.4751.00
111_I145_A1.4661.00
446_G449_R1.4641.00
305_P313_G1.4501.00
310_I314_V1.4401.00
508_A511_A1.4361.00
290_C294_L1.4281.00
172_L438_L1.4251.00
174_A183_F1.4211.00
43_W248_L1.4151.00
503_R506_D1.4081.00
170_R183_F1.4031.00
59_S208_F1.3991.00
263_R266_K1.3981.00
293_V297_L1.3901.00
402_Q407_I1.3801.00
447_W451_K1.3771.00
252_V256_G1.3731.00
436_S454_E1.3671.00
225_T228_L1.3671.00
518_C521_L1.3641.00
282_D288_R1.3561.00
514_L521_L1.3531.00
37_N40_Q1.3491.00
72_I76_F1.3471.00
434_R437_M1.3461.00
372_E422_K1.3401.00
295_I299_L1.3311.00
124_L127_S1.3301.00
480_V490_T1.3261.00
140_Q144_L1.3261.00
283_D289_I1.3251.00
328_W332_W1.3241.00
70_S203_I1.3211.00
424_L465_A1.3161.00
301_L305_P1.3161.00
289_I292_T1.3141.00
230_I246_L1.3071.00
81_L155_S1.2971.00
35_W248_L1.2971.00
62_Q66_S1.2831.00
358_E436_S1.2801.00
476_D480_V1.2801.00
304_P307_L1.2791.00
290_C293_V1.2751.00
61_W65_L1.2641.00
107_A149_F1.2621.00
93_L155_S1.2571.00
43_W47_W1.2491.00
192_L195_Q1.2391.00
69_L73_P1.2361.00
69_L143_L1.2321.00
71_V154_A1.2301.00
504_S511_A1.2301.00
291_D295_I1.2301.00
449_R453_V1.2251.00
435_Y457_A1.2161.00
75_I196_I1.2051.00
185_R189_W1.2051.00
411_T479_V1.2031.00
88_G91_A1.1891.00
508_A514_L1.1881.00
510_T514_L1.1861.00
510_T518_C1.1831.00
439_C452_V1.1680.99
423_V465_A1.1680.99
412_N480_V1.1670.99
514_L517_L1.1640.99
412_N473_S1.1600.99
158_L196_I1.1580.99
317_Q320_E1.1570.99
282_D290_C1.1570.99
329_Q332_W1.1570.99
142_I214_V1.1560.99
333_T488_F1.1520.99
307_L311_V1.1510.99
61_W143_L1.1490.99
310_I313_G1.1490.99
173_A178_M1.1480.99
52_L56_V1.1440.99
424_L458_L1.1410.99
60_F64_F1.1410.99
183_F187_V1.1400.99
420_A469_A1.1350.99
287_S290_C1.1330.99
148_F301_L1.1310.99
341_A413_A1.1280.99
282_D285_L1.1220.99
345_C413_A1.1150.99
508_A515_L1.1130.99
319_P323_A1.1050.99
345_C469_A1.1010.99
112_L137_Y1.0990.99
504_S508_A1.0910.99
288_R291_D1.0880.99
29_A33_A1.0850.99
27_A35_W1.0830.99
520_L524_V1.0800.99
76_F80_A1.0800.99
146_H210_S1.0790.99
65_L69_L1.0790.99
44_V48_Q1.0760.99
61_W64_F1.0760.99
170_R174_A1.0740.99
66_S146_H1.0730.99
302_L305_P1.0700.99
511_A517_L1.0660.99
523_T527_K1.0590.99
494_Y497_Q1.0580.99
511_A515_L1.0570.99
279_R282_D1.0510.99
158_L192_L1.0510.99
283_D288_R1.0490.99
504_S514_L1.0480.99
420_A465_A1.0470.99
129_G132_W1.0450.99
77_L151_L1.0450.99
148_F300_L1.0440.99
387_A478_G1.0390.99
484_G493_F1.0380.99
455_L462_L1.0370.99
343_V347_V1.0350.99
169_Q191_W1.0310.99
62_Q142_I1.0310.99
23_V27_A1.0280.99
30_A34_L1.0280.99
79_R184_F1.0220.99
337_I405_D1.0190.99
331_L491_L1.0190.99
320_E323_A1.0170.99
309_V313_G1.0160.99
229_A232_Q1.0160.99
157_L199_V1.0150.99
319_P322_L1.0100.98
438_L441_S1.0080.98
286_H290_C1.0080.98
233_A239_D1.0050.98
45_A48_Q1.0030.98
25_A29_A1.0010.98
93_L159_L0.9950.98
299_L304_P0.9920.98
55_V59_S0.9890.98
248_L252_V0.9870.98
42_D45_A0.9860.98
263_R267_A0.9860.98
150_N207_C0.9830.98
303_L307_L0.9830.98
408_V412_N0.9820.98
41_D45_A0.9810.98
511_A521_L0.9800.98
336_R405_D0.9770.98
288_R292_T0.9760.98
440_Q449_R0.9740.98
317_Q322_L0.9700.98
292_T296_V0.9670.98
518_C522_F0.9660.98
77_L96_C0.9650.98
383_G415_M0.9640.98
208_F250_Q0.9580.98
311_V315_N0.9570.98
40_Q44_V0.9570.98
439_C453_V0.9560.98
106_V511_A0.9520.98
179_R183_F0.9490.98
328_W331_L0.9490.98
513_I517_L0.9480.98
404_A407_I0.9460.98
333_T336_R0.9460.98
198_P422_K0.9450.98
458_L461_P0.9440.98
158_L162_L0.9420.98
224_T229_A0.9420.98
427_P458_L0.9390.98
470_C521_L0.9390.98
349_T421_L0.9390.98
308_A312_D0.9370.98
397_T400_L0.9370.98
66_S70_S0.9360.98
511_A518_C0.9340.97
34_L392_L0.9320.97
431_I457_A0.9310.97
41_D68_L0.9310.97
309_V314_V0.9300.97
338_A473_S0.9260.97
85_R282_D0.9240.97
73_P147_V0.9230.97
416_A469_A0.9220.97
495_L511_A0.9210.97
331_L517_L0.9200.97
110_G218_G0.9170.97
428_M458_L0.9130.97
192_L196_I0.9110.97
57_R60_F0.9090.97
521_L525_I0.9060.97
353_L424_L0.9060.97
151_L155_S0.9050.97
39_P42_D0.9010.97
489_R497_Q0.9000.97
174_A180_S0.8960.97
29_A32_L0.8950.97
342_G346_V0.8930.97
509_V512_L0.8920.97
289_I293_V0.8910.97
295_I303_L0.8850.97
332_W335_L0.8810.96
164_N430_D0.8810.96
261_S265_S0.8780.96
345_C420_A0.8770.96
318_L322_L0.8720.96
112_L216_S0.8710.96
70_S154_A0.8680.96
352_L421_L0.8670.96
165_I192_L0.8660.96
66_S207_C0.8650.96
498_Q510_T0.8630.96
273_T276_Q0.8620.96
320_E324_Q0.8610.96
445_E449_R0.8600.96
338_A341_A0.8600.96
334_S492_P0.8590.96
281_P286_H0.8580.96
159_L163_E0.8560.96
93_L163_E0.8540.96
380_A383_G0.8540.96
27_A34_L0.8530.96
124_L128_L0.8520.96
74_A155_S0.8510.96
514_L522_F0.8500.96
53_W56_V0.8490.96
59_S227_E0.8470.96
280_D286_H0.8470.96
403_S407_I0.8470.96
281_P284_R0.8470.96
162_L188_E0.8440.95
182_H448_S0.8420.95
405_D409_I0.8420.95
354_W428_M0.8410.95
280_D283_D0.8400.95
412_N476_D0.8400.95
513_I516_L0.8370.95
334_S338_A0.8330.95
354_W358_E0.8310.95
230_I250_Q0.8310.95
270_P273_T0.8300.95
142_I218_G0.8300.95
495_L514_L0.8290.95
87_P288_R0.8280.95
485_N488_F0.8280.95
311_V314_V0.8270.95
233_A236_Y0.8260.95
450_L454_E0.8240.95
504_S518_C0.8240.95
211_F215_L0.8240.95
344_L409_I0.8230.95
484_G489_R0.8230.95
285_L290_C0.8220.95
366_L369_Q0.8210.95
224_T232_Q0.8210.95
518_C523_T0.8210.95
510_T521_L0.8190.95
27_A30_A0.8180.95
287_S291_D0.8140.94
64_F200_A0.8130.94
449_R452_V0.8120.94
229_A233_A0.8070.94
394_L407_I0.8070.94
20_T24_V0.8070.94
507_G510_T0.8070.94
224_T228_L0.8050.94
56_V253_C0.8050.94
78_A82_Y0.7910.94
225_T229_A0.7900.94
67_A204_F0.7900.94
180_S184_F0.7890.93
67_A71_V0.7890.93
278_W283_D0.7870.93
90_L93_L0.7860.93
353_L357_R0.7850.93
505_Q510_T0.7830.93
162_L192_L0.7820.93
62_Q146_H0.7820.93
80_A84_R0.7800.93
233_A242_R0.7800.93
337_I408_V0.7800.93
63_A208_F0.7800.93
107_A148_F0.7790.93
108_V212_A0.7770.93
506_D511_A0.7760.93
92_L295_I0.7750.93
145_A213_T0.7750.93
519_F523_T0.7700.93
212_A383_G0.7690.93
445_E451_K0.7680.93
274_L277_G0.7670.92
210_S475_G0.7670.92
338_A470_C0.7670.92
510_T522_F0.7660.92
330_A494_Y0.7640.92
105_L210_S0.7640.92
43_W245_M0.7620.92
19_A27_A0.7620.92
517_L523_T0.7620.92
280_D285_L0.7580.92
347_V520_L0.7570.92
284_R305_P0.7560.92
364_K369_Q0.7550.92
73_P151_L0.7530.92
364_K368_G0.7520.92
75_I154_A0.7520.92
424_L462_L0.7510.92
37_N293_V0.7500.92
340_A344_L0.7500.92
79_R162_L0.7500.92
58_F61_W0.7490.92
375_G421_L0.7480.92
294_L298_A0.7470.91
298_A301_L0.7460.91
370_V374_S0.7390.91
172_L175_Q0.7390.91
19_A23_V0.7380.91
281_P285_L0.7380.91
346_V466_L0.7370.91
504_S509_V0.7360.91
211_F496_Y0.7340.91
298_A302_L0.7340.91
391_F395_N0.7320.91
126_Q129_G0.7320.91
58_F228_L0.7280.90
161_A192_L0.7280.90
391_F397_T0.7270.90
199_V203_I0.7240.90
352_L375_G0.7230.90
210_S383_G0.7230.90
281_P287_S0.7220.90
63_A67_A0.7220.90
50_S54_H0.7220.90
396_N400_L0.7180.90
506_D518_C0.7150.90
508_A517_L0.7150.90
338_A356_S0.7120.89
77_L217_L0.7120.89
18_S22_L0.7120.89
282_D289_I0.7090.89
476_D490_T0.7080.89
103_P212_A0.7080.89
504_S510_T0.7070.89
42_D241_A0.7040.89
285_L291_D0.7030.89
294_L297_L0.7010.89
195_Q199_V0.7010.89
18_S21_T0.6990.89
167_G170_R0.6980.88
451_K455_L0.6960.88
212_A476_D0.6950.88
69_L72_I0.6940.88
121_L124_L0.6930.88
206_L209_A0.6930.88
130_L133_T0.6910.88
259_L516_L0.6900.88
436_S449_R0.6880.88
316_R323_A0.6840.87
334_S341_A0.6810.87
211_F386_L0.6810.87
187_V453_V0.6810.87
114_V308_A0.6800.87
355_S359_L0.6790.87
397_T401_P0.6790.87
317_Q321_V0.6780.87
247_A338_A0.6780.87
508_A518_C0.6750.87
301_L304_P0.6740.87
511_A522_F0.6740.87
272_T275_L0.6740.87
102_L107_A0.6720.87
81_L89_R0.6710.86
337_I412_N0.6700.86
369_Q429_R0.6690.86
113_S308_A0.6690.86
461_P465_A0.6670.86
506_D522_F0.6670.86
341_A412_N0.6660.86
22_L27_A0.6650.86
16_G19_A0.6630.86
158_L199_V0.6620.86
46_V52_L0.6620.86
125_C130_L0.6610.86
206_L379_L0.6610.86
234_L388_T0.6600.86
128_L132_W0.6590.85
149_F475_G0.6590.85
352_L417_I0.6570.85
386_L495_L0.6570.85
408_V479_V0.6560.85
346_V462_L0.6560.85
308_A311_V0.6560.85
210_S478_G0.6560.85
104_V107_A0.6530.85
165_I188_E0.6530.85
206_L472_L0.6520.85
75_I184_F0.6520.85
256_G259_L0.6520.85
514_L523_T0.6490.85
116_G137_Y0.6490.85
215_L496_Y0.6490.85
510_T517_L0.6470.84
305_P312_D0.6450.84
129_G133_T0.6450.84
343_V348_L0.6440.84
85_R283_D0.6430.84
111_I477_F0.6420.84
21_T29_A0.6410.84
506_D510_T0.6410.84
184_F189_W0.6400.84
265_S268_I0.6400.84
237_D240_P0.6380.84
82_Y162_L0.6380.84
335_L339_L0.6380.84
329_Q333_T0.6360.83
74_A77_L0.6360.83
481_A490_T0.6360.83
475_G492_P0.6340.83
42_D46_V0.6320.83
346_V465_A0.6290.83
342_G345_C0.6290.83
51_Y55_V0.6280.83
85_R90_L0.6280.83
77_L81_L0.6250.82
517_L522_F0.6240.82
105_L478_G0.6230.82
458_L462_L0.6230.82
56_V60_F0.6220.82
350_M424_L0.6220.82
86_F89_R0.6210.82
296_V411_T0.6200.82
24_V468_F0.6190.82
334_S473_S0.6180.82
81_L84_R0.6160.81
107_A172_L0.6160.81
46_V245_M0.6150.81
258_V411_T0.6140.81
419_Y472_L0.6130.81
336_R516_L0.6130.81
113_S312_D0.6130.81
110_G308_A0.6130.81
343_V346_V0.6120.81
142_I213_T0.6120.81
58_F62_Q0.6120.81
406_G409_I0.6120.81
358_E433_A0.6120.81
121_L125_C0.6110.81
205_M209_A0.6100.81
72_I256_G0.6100.81
481_A484_G0.6090.81
60_F521_L0.6090.81
316_R325_P0.6090.81
60_F181_W0.6090.81
71_V199_V0.6080.81
523_T526_E0.6070.81
479_V483_F0.6070.81
146_H214_V0.6060.80
158_L195_Q0.6060.80
279_R347_V0.6050.80
412_N415_M0.6050.80
15_P347_V0.6040.80
100_L153_M0.6040.80
365_M369_Q0.6030.80
381_M385_V0.6020.80
74_A78_A0.6010.80
27_A36_W0.6010.80
18_S364_K0.5990.80
460_R483_F0.5990.80
96_C151_L0.5980.80
243_A389_G0.5980.80
505_Q509_V0.5970.79
270_P276_Q0.5960.79
320_E325_P0.5960.79
31_F36_W0.5960.79
300_L305_P0.5960.79
307_L310_I0.5950.79
283_D290_C0.5950.79
122_A130_L0.5950.79
85_R281_P0.5940.79
319_P324_Q0.5920.79
481_A493_F0.5920.79
209_A479_V0.5910.79
15_P21_T0.5910.79
291_D294_L0.5910.79
70_S143_L0.5900.79
76_F293_V0.5880.78
108_V389_G0.5880.78
250_Q382_P0.5870.78
227_E250_Q0.5870.78
314_V447_W0.5850.78
44_V47_W0.5850.78
346_V424_L0.5840.78
31_F35_W0.5830.78
216_S498_Q0.5820.78
104_V213_T0.5790.77
199_V476_D0.5790.77
390_F410_F0.5790.77
316_R366_L0.5790.77
450_L455_L0.5780.77
350_M390_F0.5770.77
235_S388_T0.5760.77
262_Q266_K0.5760.77
390_F411_T0.5760.77
32_L36_W0.5750.77
225_T496_Y0.5750.77
491_L502_Y0.5750.77
105_L477_F0.5740.77
506_D509_V0.5740.77
32_L248_L0.5740.77
201_A258_V0.5720.76
91_A298_A0.5720.76
162_L382_P0.5710.76
481_A496_Y0.5710.76
75_I79_R0.5710.76
178_M183_F0.5700.76
474_I517_L0.5700.76
480_V492_P0.5700.76
469_A473_S0.5690.76
116_G218_G0.5690.76
206_L478_G0.5690.76
76_F294_L0.5690.76
84_R291_D0.5680.76
120_W124_L0.5680.76
31_F34_L0.5680.76
68_L71_V0.5680.76
302_L307_L0.5670.76
306_L309_V0.5670.76
109_F238_Y0.5650.76
280_D289_I0.5640.75
290_C307_L0.5640.75
313_G512_L0.5630.75
85_R285_L0.5630.75
489_R493_F0.5630.75
75_I162_L0.5620.75
112_L116_G0.5620.75
279_R284_R0.5610.75
64_F396_N0.5600.75
36_W42_D0.5600.75
80_A86_F0.5590.75
77_L155_S0.5590.75
359_L364_K0.5570.75
440_Q458_L0.5570.75
408_V480_V0.5560.74
428_M454_E0.5550.74
345_C349_T0.5550.74
73_P294_L0.5530.74
477_F490_T0.5530.74
206_L380_A0.5520.74
472_L475_G0.5520.74
196_I262_Q0.5520.74
385_V415_M0.5510.74
115_Y492_P0.5510.74
207_C492_P0.5500.74
228_L232_Q0.5500.74
271_G277_G0.5500.74
256_G339_L0.5480.73
317_Q323_A0.5480.73
367_A370_V0.5470.73
388_T482_L0.5450.73
515_L521_L0.5450.73
162_L190_P0.5440.73
415_M476_D0.5440.73
322_L325_P0.5440.73
22_L25_A0.5430.73
153_M199_V0.5430.73
105_L475_G0.5430.73
505_Q514_L0.5430.73
340_A343_V0.5420.73
225_T491_L0.5420.73
70_S151_L0.5420.73
509_V518_C0.5410.72
292_T295_I0.5410.72
293_V300_L0.5410.72
210_S213_T0.5410.72
321_V325_P0.5390.72
172_L178_M0.5390.72
438_L444_I0.5380.72
72_I451_K0.5380.72
255_L259_L0.5370.72
150_N210_S0.5360.72
318_L321_V0.5360.72
32_L35_W0.5360.72
247_A385_V0.5360.72
36_W61_W0.5340.71
150_N206_L0.5340.71
524_V527_K0.5340.71
97_A522_F0.5330.71
202_L472_L0.5320.71
468_F511_A0.5320.71
278_W281_P0.5320.71
272_T277_G0.5320.71
30_A33_A0.5300.71
52_L225_T0.5290.71
142_I219_G0.5290.71
22_L401_P0.5290.71
152_P383_G0.5280.71
271_G433_A0.5280.71
185_R447_W0.5270.70
281_P288_R0.5270.70
191_W194_R0.5270.70
230_I243_A0.5270.70
29_A347_V0.5260.70
142_I217_L0.5250.70
391_F402_Q0.5240.70
379_L475_G0.5240.70
204_F214_V0.5230.70
128_L131_E0.5230.70
179_R185_R0.5230.70
146_H150_N0.5210.70
225_T490_T0.5210.70
219_G482_L0.5200.69
302_L306_L0.5200.69
455_L458_L0.5190.69
305_P476_D0.5190.69
482_L495_L0.5190.69
394_L414_L0.5180.69
504_S517_L0.5180.69
504_S515_L0.5170.69
142_I228_L0.5170.69
211_F228_L0.5170.69
61_W68_L0.5160.69
28_L36_W0.5160.69
152_P385_V0.5150.69
412_N490_T0.5150.69
309_V315_N0.5150.69
105_L383_G0.5150.69
278_W284_R0.5140.69
141_G338_A0.5130.68
81_L92_L0.5120.68
276_Q453_V0.5120.68
319_P335_L0.5120.68
243_A475_G0.5120.68
280_D284_R0.5100.68
18_S371_L0.5100.68
353_L425_E0.5090.68
294_L301_L0.5090.68
390_F414_L0.5090.68
304_P308_A0.5080.68
326_V329_Q0.5070.68
137_Y204_F0.5070.68
62_Q207_C0.5070.68
450_L524_V0.5060.67
287_S299_L0.5050.67
331_L335_L0.5040.67
49_D52_L0.5030.67
73_P297_L0.5020.67
21_T26_V0.5020.67
41_D296_V0.5010.67
82_Y159_L0.5000.67
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2onkC 2 0.4683 100 0.654 Contact Map
3d31C 2 0.4627 100 0.662 Contact Map
4tquM 1 0.5 100 0.666 Contact Map
3rlfF 1 0.4795 100 0.697 Contact Map
3rlfG 1 0.4813 100 0.699 Contact Map
4tquN 1 0.4608 100 0.712 Contact Map
4ymuD 2 0.3993 100 0.761 Contact Map
3tuiA 2 0.3955 99.9 0.782 Contact Map
4xtrG 1 0.041 11.1 0.976 Contact Map
2kluA 1 0.069 11 0.976 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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