RAVA - ECOLI - GREMLIN Contacts

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RAVA - ATPase RavA

UniProt:	P31473	Sequences: MAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTVIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSAQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQC	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11731
Length:	498 (434)
Sequences:	2622 (1963)
Seq/√Len:	94.2

ECOLI - RAVA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
409_K	412_L	3.069	1.00
444_G	448_Q	3.025	1.00
472_F	476_D	2.964	1.00
372_L	379_H	2.945	1.00
365_L	369_P	2.943	1.00
406_F	409_K	2.929	1.00
409_K	413_E	2.858	1.00
36_A	39_G	2.733	1.00
28_A	31_L	2.700	1.00
405_G	409_K	2.667	1.00
360_S	365_L	2.644	1.00
270_S	273_A	2.551	1.00
348_R	352_Q	2.538	1.00
458_R	462_A	2.484	1.00
464_F	468_Q	2.471	1.00
422_V	425_V	2.427	1.00
451_E	455_S	2.415	1.00
376_E	379_H	2.410	1.00
359_A	363_T	2.380	1.00
111_V	114_D	2.378	1.00
372_L	376_E	2.303	1.00
263_S	267_S	2.286	1.00
78_T	81_E	2.217	1.00
474_P	481_I	2.189	1.00
351_Y	354_P	2.189	1.00
429_G	432_L	2.186	1.00
465_S	469_K	2.133	1.00
375_M	379_H	2.128	1.00
351_Y	355_V	2.110	1.00
446_I	453_L	2.092	1.00
416_S	419_H	2.079	1.00
348_R	355_V	2.073	1.00
372_L	377_V	2.073	1.00
110_I	114_D	2.057	1.00
423_R	427_L	2.054	1.00
425_V	432_L	1.939	1.00
372_L	375_M	1.922	1.00
267_S	270_S	1.917	1.00
360_S	377_V	1.916	1.00
374_D	379_H	1.902	1.00
422_V	426_S	1.901	1.00
340_R	344_I	1.898	1.00
367_Q	379_H	1.888	1.00
416_S	424_D	1.888	1.00
352_Q	356_N	1.863	1.00
407_A	412_L	1.853	1.00
405_G	414_V	1.851	1.00
365_L	377_V	1.849	1.00
464_F	474_P	1.843	1.00
416_S	425_V	1.827	1.00
358_T	363_T	1.818	1.00
347_R	354_P	1.817	1.00
367_Q	372_L	1.784	1.00
367_Q	376_E	1.783	1.00
464_F	471_L	1.782	1.00
407_A	414_V	1.759	1.00
330_Q	337_T	1.755	1.00
369_P	372_L	1.746	1.00
471_L	481_I	1.743	1.00
360_S	363_T	1.741	1.00
405_G	413_E	1.723	1.00
110_I	113_L	1.723	1.00
416_S	422_V	1.722	1.00
89_Q	92_K	1.721	1.00
429_G	436_G	1.720	1.00
453_L	460_Q	1.699	1.00
373_H	379_H	1.680	1.00
478_L	481_I	1.647	1.00
369_P	379_H	1.634	1.00
333_K	337_T	1.631	1.00
360_S	364_L	1.584	1.00
405_G	408_Q	1.569	1.00
462_A	466_E	1.567	1.00
165_E	168_Y	1.567	1.00
88_I	92_K	1.566	1.00
406_F	412_L	1.553	1.00
450_L	453_L	1.537	1.00
340_R	343_G	1.535	1.00
347_R	355_V	1.532	1.00
471_L	474_P	1.515	1.00
407_A	413_E	1.514	1.00
361_T	372_L	1.511	1.00
110_I	115_E	1.509	1.00
365_L	370_L	1.501	1.00
102_S	105_L	1.499	1.00
399_G	403_G	1.499	1.00
408_Q	414_V	1.497	1.00
279_L	283_C	1.496	1.00
397_I	400_K	1.490	1.00
352_Q	355_V	1.486	1.00
267_S	273_A	1.484	1.00
471_L	478_L	1.482	1.00
225_P	241_K	1.475	1.00
382_F	385_S	1.471	1.00
165_E	170_R	1.468	1.00
370_L	373_H	1.464	1.00
232_I	241_K	1.459	1.00
323_H	330_Q	1.456	1.00
355_V	360_S	1.448	1.00
365_L	379_H	1.447	1.00
400_K	403_G	1.437	1.00
383_E	386_A	1.432	1.00
267_S	271_A	1.430	0.99
234_M	238_Q	1.429	0.99
432_L	436_G	1.400	0.99
365_L	372_L	1.392	0.99
406_F	413_E	1.392	0.99
360_S	372_L	1.392	0.99
347_R	351_Y	1.377	0.99
422_V	429_G	1.377	0.99
361_T	365_L	1.375	0.99
454_E	458_R	1.362	0.99
339_I	343_G	1.361	0.99
360_S	369_P	1.356	0.99
464_F	467_Q	1.355	0.99
87_S	91_L	1.349	0.99
384_R	387_L	1.341	0.99
225_P	228_V	1.341	0.99
398_R	402_N	1.336	0.99
472_F	475_G	1.327	0.99
477_W	481_I	1.326	0.99
330_Q	333_K	1.324	0.99
389_Q	392_S	1.318	0.99
212_Y	215_W	1.318	0.99
382_F	387_L	1.317	0.99
373_H	376_E	1.313	0.99
423_R	426_S	1.301	0.99
360_S	367_Q	1.295	0.99
368_K	372_L	1.283	0.99
453_L	456_D	1.282	0.99
395_G	398_R	1.279	0.99
405_G	412_L	1.278	0.99
216_Q	219_I	1.258	0.99
367_Q	375_M	1.258	0.99
323_H	337_T	1.256	0.99
322_R	326_L	1.255	0.99
294_I	297_Q	1.252	0.99
111_V	115_E	1.252	0.99
460_Q	471_L	1.252	0.99
35_A	42_V	1.248	0.99
453_L	457_W	1.241	0.99
232_I	236_R	1.232	0.98
455_S	459_K	1.230	0.98
345_F	349_Q	1.227	0.98
386_A	391_L	1.226	0.98
209_D	215_W	1.224	0.98
387_L	392_S	1.224	0.98
369_P	373_H	1.223	0.98
404_I	407_A	1.222	0.98
27_H	31_L	1.216	0.98
380_I	384_R	1.212	0.98
467_Q	471_L	1.209	0.98
364_L	373_H	1.200	0.98
460_Q	467_Q	1.190	0.98
383_E	388_E	1.189	0.98
103_G	108_A	1.189	0.98
381_S	385_S	1.188	0.98
404_I	414_V	1.184	0.98
200_P	203_D	1.183	0.98
381_S	384_R	1.179	0.98
53_S	70_E	1.179	0.98
369_P	376_E	1.174	0.98
460_Q	463_L	1.165	0.98
384_R	392_S	1.156	0.98
225_P	232_I	1.155	0.98
215_W	219_I	1.148	0.98
344_I	351_Y	1.148	0.98
396_E	400_K	1.146	0.98
382_F	386_A	1.145	0.98
424_D	432_L	1.144	0.98
310_Q	314_T	1.144	0.98
460_Q	478_L	1.143	0.98
322_R	336_L	1.140	0.97
391_L	394_G	1.138	0.97
228_V	232_I	1.128	0.97
358_T	365_L	1.125	0.97
417_A	425_V	1.125	0.97
467_Q	474_P	1.123	0.97
386_A	389_Q	1.121	0.97
416_S	426_S	1.121	0.97
464_F	478_L	1.115	0.97
236_R	242_L	1.115	0.97
364_L	369_P	1.115	0.97
398_R	401_L	1.114	0.97
320_V	330_Q	1.111	0.97
283_C	287_D	1.109	0.97
236_R	241_K	1.109	0.97
313_L	317_G	1.108	0.97
329_Q	336_L	1.108	0.97
474_P	477_W	1.108	0.97
208_T	215_W	1.107	0.97
236_R	240_D	1.102	0.97
419_H	424_D	1.101	0.97
366_L	369_P	1.095	0.97
475_G	479_G	1.095	0.97
407_A	411_N	1.094	0.97
384_R	388_E	1.094	0.97
367_Q	370_L	1.092	0.97
348_R	353_L	1.091	0.97
208_T	211_E	1.089	0.97
35_A	39_G	1.087	0.97
369_P	375_M	1.085	0.97
211_E	215_W	1.083	0.97
467_Q	478_L	1.079	0.96
360_S	376_E	1.075	0.96
347_R	350_Q	1.074	0.96
360_S	373_H	1.073	0.96
270_S	274_P	1.073	0.96
460_Q	481_I	1.071	0.96
82_V	85_P	1.066	0.96
398_R	403_G	1.065	0.96
396_E	402_N	1.061	0.96
461_H	464_F	1.055	0.96
375_M	378_V	1.054	0.96
326_L	329_Q	1.046	0.96
232_I	235_L	1.044	0.96
365_L	378_V	1.043	0.96
453_L	474_P	1.042	0.96
102_S	108_A	1.041	0.96
380_I	383_E	1.041	0.96
446_I	474_P	1.040	0.96
425_V	429_G	1.037	0.96
88_I	91_L	1.034	0.96
412_L	416_S	1.034	0.96
363_T	366_L	1.031	0.95
235_L	239_L	1.031	0.95
432_L	435_P	1.030	0.95
419_H	422_V	1.028	0.95
260_L	263_S	1.027	0.95
289_Q	293_L	1.027	0.95
471_L	475_G	1.025	0.95
369_P	377_V	1.025	0.95
444_G	447_K	1.024	0.95
294_I	298_I	1.021	0.95
208_T	216_Q	1.020	0.95
464_F	481_I	1.019	0.95
105_L	108_A	1.018	0.95
209_D	216_Q	1.016	0.95
451_E	454_E	1.014	0.95
404_I	409_K	1.012	0.95
263_S	273_A	1.005	0.95
391_L	396_E	1.003	0.95
358_T	361_T	1.003	0.95
422_V	432_L	1.001	0.95
411_N	415_D	1.001	0.95
399_G	402_N	1.000	0.95
397_I	401_L	1.000	0.95
396_E	399_G	0.981	0.94
206_Q	209_D	0.980	0.94
323_H	326_L	0.975	0.94
308_Q	311_G	0.974	0.94
421_V	425_V	0.973	0.94
417_A	422_V	0.972	0.94
457_W	464_F	0.972	0.94
84_G	87_S	0.968	0.94
235_L	241_K	0.966	0.94
296_Q	300_V	0.963	0.93
419_H	425_V	0.960	0.93
384_R	393_K	0.960	0.93
321_Q	325_Q	0.959	0.93
370_L	379_H	0.958	0.93
283_C	286_Y	0.956	0.93
209_D	212_Y	0.954	0.93
211_E	219_I	0.953	0.93
228_V	240_D	0.952	0.93
348_R	351_Y	0.951	0.93
322_R	329_Q	0.949	0.93
397_I	403_G	0.946	0.93
280_L	283_C	0.945	0.93
365_L	368_K	0.943	0.93
370_L	376_E	0.941	0.93
430_S	434_L	0.941	0.93
417_A	420_L	0.940	0.93
425_V	439_A	0.940	0.93
320_V	323_H	0.936	0.92
327_Q	331_S	0.932	0.92
357_V	363_T	0.931	0.92
329_Q	335_A	0.931	0.92
468_Q	474_P	0.930	0.92
461_H	465_S	0.929	0.92
406_F	414_V	0.929	0.92
407_A	410_L	0.927	0.92
440_E	481_I	0.926	0.92
323_H	327_Q	0.926	0.92
429_G	433_A	0.926	0.92
212_Y	216_Q	0.926	0.92
331_S	337_T	0.924	0.92
435_P	439_A	0.922	0.92
236_R	239_L	0.920	0.92
298_I	306_A	0.919	0.92
357_V	360_S	0.917	0.92
386_A	392_S	0.912	0.91
385_S	388_E	0.912	0.91
291_L	294_I	0.910	0.91
460_Q	464_F	0.909	0.91
428_Q	432_L	0.909	0.91
388_E	392_S	0.906	0.91
263_S	266_F	0.906	0.91
367_Q	377_V	0.905	0.91
441_G	445_E	0.904	0.91
364_L	372_L	0.899	0.91
422_V	439_A	0.897	0.91
31_L	34_L	0.893	0.91
468_Q	472_F	0.892	0.91
366_L	370_L	0.891	0.90
364_L	379_H	0.887	0.90
391_L	400_K	0.883	0.90
208_T	212_Y	0.883	0.90
327_Q	330_Q	0.883	0.90
295_Q	298_I	0.881	0.90
322_R	330_Q	0.881	0.90
469_K	473_I	0.880	0.90
113_L	118_K	0.880	0.90
385_S	392_S	0.879	0.90
361_T	379_H	0.878	0.90
341_L	345_F	0.877	0.90
382_F	391_L	0.875	0.90
207_V	212_Y	0.871	0.89
473_I	477_W	0.867	0.89
271_A	274_P	0.867	0.89
381_S	387_L	0.867	0.89
425_V	428_Q	0.866	0.89
367_Q	373_H	0.866	0.89
325_Q	329_Q	0.866	0.89
320_V	324_L	0.866	0.89
211_E	216_Q	0.860	0.89
77_S	82_V	0.856	0.89
290_S	294_I	0.851	0.88
463_L	466_E	0.851	0.88
166_A	170_R	0.849	0.88
209_D	219_I	0.848	0.88
35_A	38_S	0.847	0.88
114_D	117_W	0.845	0.88
373_H	378_V	0.845	0.88
365_L	376_E	0.839	0.88
371_K	375_M	0.838	0.88
140_A	144_K	0.836	0.87
465_S	468_Q	0.835	0.87
433_A	436_G	0.833	0.87
474_P	480_R	0.833	0.87
437_S	440_E	0.832	0.87
395_G	399_G	0.828	0.87
467_Q	475_G	0.824	0.87
347_R	353_L	0.824	0.87
344_I	347_R	0.823	0.87
459_K	463_L	0.822	0.87
410_L	414_V	0.822	0.87
453_L	471_L	0.816	0.86
232_I	239_L	0.816	0.86
369_P	374_D	0.815	0.86
384_R	389_Q	0.815	0.86
470_C	474_P	0.813	0.86
371_K	377_V	0.812	0.86
424_D	427_L	0.811	0.86
308_Q	312_M	0.809	0.86
316_L	319_I	0.809	0.86
433_A	437_S	0.808	0.86
268_G	271_A	0.808	0.86
404_I	413_E	0.803	0.85
322_R	332_D	0.802	0.85
423_R	429_G	0.802	0.85
467_Q	477_W	0.799	0.85
409_K	414_V	0.798	0.85
405_G	411_N	0.798	0.85
446_I	478_L	0.796	0.85
323_H	333_K	0.795	0.85
326_L	331_S	0.795	0.85
474_P	478_L	0.795	0.85
102_S	107_E	0.795	0.85
397_I	402_N	0.795	0.85
427_L	431_T	0.790	0.84
215_W	218_E	0.786	0.84
350_Q	355_V	0.786	0.84
453_L	464_F	0.784	0.84
312_M	319_I	0.783	0.84
77_S	85_P	0.783	0.84
324_L	328_Q	0.781	0.84
303_T	307_W	0.781	0.84
231_L	236_R	0.780	0.84
384_R	394_G	0.780	0.84
207_V	219_I	0.777	0.83
440_E	453_L	0.773	0.83
370_L	374_D	0.773	0.83
347_R	356_N	0.773	0.83
355_V	372_L	0.769	0.83
360_S	370_L	0.768	0.83
297_Q	301_L	0.768	0.83
212_Y	219_I	0.766	0.82
328_Q	332_D	0.764	0.82
308_Q	319_I	0.763	0.82
383_E	389_Q	0.763	0.82
349_Q	354_P	0.761	0.82
326_L	330_Q	0.759	0.82
387_L	402_N	0.758	0.82
330_Q	336_L	0.757	0.82
466_E	470_C	0.753	0.81
363_T	375_M	0.752	0.81
204_A	208_T	0.752	0.81
103_G	107_E	0.750	0.81
322_R	333_K	0.750	0.81
461_H	474_P	0.749	0.81
231_L	237_Q	0.749	0.81
385_S	389_Q	0.747	0.81
391_L	402_N	0.746	0.81
358_T	375_M	0.744	0.81
381_S	388_E	0.743	0.81
323_H	332_D	0.742	0.80
372_L	378_V	0.742	0.80
410_L	413_E	0.742	0.80
332_D	335_A	0.740	0.80
411_N	414_V	0.736	0.80
468_Q	471_L	0.734	0.80
386_A	393_K	0.734	0.80
381_S	386_A	0.731	0.79
450_L	454_E	0.730	0.79
300_V	304_G	0.730	0.79
384_R	395_G	0.730	0.79
470_C	473_I	0.730	0.79
360_S	379_H	0.729	0.79
453_L	481_I	0.729	0.79
421_V	426_S	0.726	0.79
315_R	318_A	0.725	0.79
460_Q	468_Q	0.724	0.79
291_L	295_Q	0.723	0.79
260_L	264_A	0.723	0.79
370_L	375_M	0.722	0.79
309_Q	312_M	0.721	0.79
340_R	348_R	0.720	0.78
368_K	371_K	0.720	0.78
395_G	401_L	0.718	0.78
207_V	211_E	0.716	0.78
426_S	429_G	0.715	0.78
235_L	238_Q	0.710	0.77
383_E	390_W	0.709	0.77
447_K	451_E	0.708	0.77
330_Q	335_A	0.708	0.77
272_V	276_D	0.706	0.77
322_R	337_T	0.706	0.77
299_D	303_T	0.705	0.77
213_E	216_Q	0.704	0.77
263_S	270_S	0.703	0.77
334_T	338_V	0.701	0.77
429_G	435_P	0.701	0.77
383_E	387_L	0.700	0.76
431_T	435_P	0.697	0.76
404_I	411_N	0.697	0.76
205_L	211_E	0.693	0.76
208_T	218_E	0.691	0.76
434_L	438_S	0.690	0.75
408_Q	412_L	0.687	0.75
470_C	481_I	0.687	0.75
426_S	433_A	0.687	0.75
326_L	333_K	0.686	0.75
298_I	302_M	0.686	0.75
265_F	268_G	0.686	0.75
388_E	397_I	0.683	0.75
446_I	460_Q	0.682	0.75
409_K	416_S	0.679	0.74
339_I	342_G	0.678	0.74
205_L	208_T	0.678	0.74
225_P	235_L	0.678	0.74
449_Q	474_P	0.677	0.74
424_D	433_A	0.677	0.74
313_L	316_L	0.675	0.74
228_V	231_L	0.675	0.74
269_R	273_A	0.675	0.74
132_N	138_N	0.674	0.74
428_Q	460_Q	0.674	0.74
360_S	374_D	0.673	0.74
269_R	272_V	0.671	0.73
250_D	253_W	0.669	0.73
347_R	352_Q	0.669	0.73
424_D	439_A	0.667	0.73
290_S	293_L	0.667	0.73
439_A	478_L	0.667	0.73
291_L	297_Q	0.666	0.73
290_S	298_I	0.665	0.73
365_L	373_H	0.665	0.73
404_I	408_Q	0.663	0.72
345_F	348_R	0.663	0.72
388_E	391_L	0.660	0.72
324_L	327_Q	0.659	0.72
329_Q	333_K	0.659	0.72
445_E	449_Q	0.657	0.72
371_K	379_H	0.657	0.72
390_W	394_G	0.656	0.72
315_R	319_I	0.653	0.71
237_Q	240_D	0.652	0.71
454_E	457_W	0.650	0.71
87_S	92_K	0.649	0.71
468_Q	478_L	0.646	0.71
446_I	449_Q	0.644	0.70
408_Q	413_E	0.643	0.70
436_G	439_A	0.642	0.70
404_I	412_L	0.641	0.70
368_K	379_H	0.638	0.70
355_V	371_K	0.637	0.69
382_F	389_Q	0.636	0.69
132_N	166_A	0.635	0.69
373_H	377_V	0.633	0.69
371_K	376_E	0.632	0.69
358_T	364_L	0.632	0.69
424_D	429_G	0.630	0.69
471_L	477_W	0.630	0.69
321_Q	326_L	0.627	0.68
386_A	394_G	0.625	0.68
331_S	334_T	0.624	0.68
420_L	425_V	0.620	0.67
453_L	478_L	0.620	0.67
228_V	241_K	0.620	0.67
425_V	435_P	0.620	0.67
235_L	240_D	0.619	0.67
467_Q	481_I	0.619	0.67
383_E	392_S	0.618	0.67
355_V	376_E	0.617	0.67
207_V	216_Q	0.617	0.67
391_L	398_R	0.616	0.67
380_I	385_S	0.616	0.67
156_E	159_E	0.616	0.67
225_P	236_R	0.615	0.67
126_T	132_N	0.613	0.67
186_F	190_L	0.612	0.66
167_L	170_R	0.611	0.66
425_V	433_A	0.611	0.66
380_I	392_S	0.610	0.66
387_L	398_R	0.605	0.66
264_A	267_S	0.604	0.65
320_V	334_T	0.602	0.65
382_F	393_K	0.602	0.65
384_R	391_L	0.600	0.65
446_I	464_F	0.599	0.65
168_Y	171_M	0.599	0.65
208_T	213_E	0.599	0.65
56_A	152_A	0.598	0.65
476_D	480_R	0.597	0.65
457_W	460_Q	0.593	0.64
446_I	471_L	0.593	0.64
358_T	374_D	0.592	0.64
228_V	236_R	0.592	0.64
279_L	287_D	0.591	0.64
424_D	428_Q	0.589	0.63
425_V	430_S	0.589	0.63
328_Q	331_S	0.588	0.63
274_P	278_I	0.588	0.63
350_Q	353_L	0.588	0.63
387_L	390_W	0.588	0.63
87_S	90_A	0.588	0.63
406_F	410_L	0.586	0.63
212_Y	218_E	0.585	0.63
322_R	325_Q	0.583	0.63
395_G	403_G	0.582	0.63
393_K	398_R	0.582	0.63
26_S	30_R	0.582	0.63
265_F	269_R	0.582	0.63
465_S	471_L	0.579	0.62
180_V	185_N	0.579	0.62
213_E	217_K	0.579	0.62
364_L	368_K	0.578	0.62
361_T	376_E	0.578	0.62
348_R	354_P	0.575	0.62
459_K	462_A	0.575	0.62
447_K	460_Q	0.573	0.61
358_T	369_P	0.573	0.61
181_Q	185_N	0.573	0.61
205_L	216_Q	0.572	0.61
467_Q	480_R	0.572	0.61
262_A	267_S	0.572	0.61
221_E	225_P	0.570	0.61
388_E	395_G	0.569	0.61
382_F	392_S	0.566	0.60
364_L	370_L	0.565	0.60
416_S	420_L	0.564	0.60
394_G	398_R	0.562	0.60
365_L	375_M	0.562	0.60
453_L	467_Q	0.561	0.60
461_H	478_L	0.561	0.60
279_L	282_D	0.560	0.60
404_I	417_A	0.560	0.60
387_L	391_L	0.560	0.60
329_Q	332_D	0.558	0.59
468_Q	481_I	0.557	0.59
208_T	219_I	0.557	0.59
355_V	359_A	0.556	0.59
426_S	432_L	0.555	0.59
309_Q	313_L	0.554	0.59
224_L	231_L	0.554	0.59
370_L	377_V	0.553	0.59
325_Q	328_Q	0.552	0.59
330_Q	334_T	0.550	0.58
341_L	348_R	0.550	0.58
382_F	388_E	0.549	0.58
358_T	379_H	0.549	0.58
135_Q	138_N	0.548	0.58
128_L	131_I	0.548	0.58
380_I	387_L	0.547	0.58
267_S	274_P	0.547	0.58
320_V	333_K	0.546	0.58
423_R	432_L	0.546	0.58
448_Q	452_E	0.544	0.57
262_A	265_F	0.544	0.57
363_T	379_H	0.543	0.57
346_S	350_Q	0.542	0.57
361_T	374_D	0.542	0.57
419_H	426_S	0.541	0.57
238_Q	241_K	0.541	0.57
297_Q	303_T	0.540	0.57
464_F	477_W	0.540	0.57
457_W	467_Q	0.539	0.57
231_L	235_L	0.538	0.57
112_F	117_W	0.538	0.57
129_T	133_E	0.537	0.56
446_I	481_I	0.537	0.56
403_G	414_V	0.536	0.56
315_R	322_R	0.536	0.56
360_S	371_K	0.535	0.56
428_Q	435_P	0.535	0.56
418_Q	429_G	0.535	0.56
206_Q	211_E	0.532	0.56
227_H	241_K	0.531	0.56
387_L	393_K	0.531	0.56
328_Q	336_L	0.528	0.55
371_K	374_D	0.528	0.55
341_L	354_P	0.527	0.55
363_T	371_K	0.526	0.55
274_P	277_L	0.524	0.55
374_D	377_V	0.524	0.55
418_Q	425_V	0.523	0.55
141_H	149_L	0.517	0.54
384_R	397_I	0.515	0.53
464_F	473_I	0.514	0.53
251_R	255_K	0.514	0.53
381_S	392_S	0.513	0.53
424_D	435_P	0.513	0.53
386_A	402_N	0.512	0.53
273_A	277_L	0.512	0.53
329_Q	338_V	0.512	0.53
456_D	460_Q	0.510	0.53
393_K	400_K	0.510	0.53
457_W	471_L	0.510	0.53
232_I	240_D	0.509	0.53
446_I	461_H	0.508	0.52
392_S	402_N	0.506	0.52
381_S	390_W	0.504	0.52
437_S	441_G	0.504	0.52
225_P	240_D	0.504	0.52
360_S	366_L	0.504	0.52
231_L	234_M	0.502	0.52
460_Q	474_P	0.502	0.52
112_F	115_E	0.502	0.52
343_G	354_P	0.501	0.51
396_E	403_G	0.500	0.51

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4rh7A	1	0.9056	100	0.288	Contact Map
3vkgA	2	0.8333	100	0.351	Contact Map
4akgA	2	0.5542	100	0.558	Contact Map
3nbxX	1	0.9618	100	0.651	Contact Map
4r7yA	3	0.5643	100	0.732	Contact Map
2r44A	1	0.6064	100	0.742	Contact Map
3ja82	1	0.5924	99.9	0.748	Contact Map
3ja83	1	0.5442	99.9	0.759	Contact Map
3ja84	1	0.5562	99.9	0.759	Contact Map
3f8tA	1	0.494	99.9	0.762	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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