SETC - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

SETC - Sugar efflux transporter C

UniProt:	P31436	Sequences: MQKTATTPSKILDLTAAAFLLVAFLTGIAGALQTPTLSIFLADELKARPIMVGFFFTGSAIMGILVSQFLARHSDKQGDRKLLILLCCLFGVLACTLFAWNRNYFILLSTGVLLSSFASTANPQMFALAREHADRTGRETVMFSTFLRAQISLAWVIGPPLAYELAMGFSFKVMYLTAAIAFVVCGLIVWLFLPSIQRNIPVVTQPVEILPSTHRKRDTRLLFVVCSMMWAANNLYMINMPLFIIDELHLTDKLTGEMIGIAAGLEIPMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASVLMATTPAVELELQILNAIFLGILCGIGMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSYHALFWLAIGMLGIAMICLLFIKDI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11687
Length:	394 (370)
Sequences:	169803 (122812)
Seq/√Len:	6384.7

ECOLI - SETC SETB SETA MDTM MDTG NEPI MDFA RHMT BCR HSRA YEBQ KGTP YJHB YAAU UHPC YDJE YNFM NANT MHPT SOTB YBJJ SHIA YJJL YDEE EMRD MDTL DGOT YGCS GALP UHPT XYLE YHJE ARAE PROP ENTS YDIN YAJR YGAY YDHP EMRB YIHO EXUT GLPT FUCP FSR MDTH YDIM YDJK YQCE TSGA MDTD YEAN GARP EMRY YIHP NARU ARAJ AMPG YDHC UIDB YHHS GUDP YHJX YFCJ YIHN LPLT YICJ YJIJ LACY YDFJ NARK NUPG YAGG HCAT XAPB YCAD MELB CYNX YEGT DTPA DTPB
BACSU - YCNB TCRB YHCA YVMA YWFA YDGK MMR YXLH YFHI YYBO YYBF NASA YDER CSBX YHJO GLPT YTBD LMRB YFNC YNCC YBFB NAIP EXUT YYAJ YUBD BMR2 CSBC YFMO YFKL IOLT YYCB ARAE YUSP YVKA YJBB YCXA YCEJ YFIG YWOG YVQJ YBCL GUDP YFIS YDEG IOLF YWOD YITG YWTG BMR1 YQJV YFKF PBUE NARK YDDS BMR3 YUXJ GUTA YKUC YFMI YQGE YOAB YXAM YNAJ YJMB YWBF GLCP YTTB BBEX YXIO YFIU YCLF
HALSA - Q9HSM8 O54630 Q9HSK3 Q9HRX5 Q9HMQ8 Q9HS33 Q9HPD6 Q9HMR5 Q9HN67 Q9HSE5
SULSO - Q97Y43 Q7LX65 Q97UD8 Q97U43 Q97YL8 Q97U98 Q97WR1 Q7LX71 Q97U80 Q97YY8 Q97UY7 Q97VB7 Q97U76 Q97X47 Q97V89 Q97U99 Q97VB9 Q97VV2 Q97VT2 Q97WR9 Q97WS7 Q980K3 Q97X63 Q97WT1 Q97UR4 Q97YH0 Q97VU3 Q97VC8 Q97U91 Q97Z36 Q97Y11 Q97X02 Q97YG2 Q97XW7 Q97ZC9 Q97Y15 Q97X92 Q97VD1 Q97Z07 Q97VQ5 Q97UK1 Q97WP8 Q97Z05 Q97YI4 Q97UJ4 Q97U71 Q97WJ7 Q97YW8 Q97UY6 Q97XG8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
102_R	106_I	3.996	1.00
97_L	110_T	3.906	1.00
80_R	131_E	3.870	1.00
90_F	117_F	3.720	1.00
99_A	176_L	3.315	1.00
62_M	112_V	3.211	1.00
94_A	110_T	3.050	1.00
70_L	120_T	2.911	1.00
105_F	109_S	2.804	1.00
92_V	182_F	2.798	1.00
87_C	120_T	2.787	1.00
75_D	340_G	2.779	1.00
133_A	143_F	2.764	1.00
103_N	106_I	2.722	1.00
335_M	342_A	2.667	1.00
141_V	278_K	2.645	1.00
94_A	117_F	2.578	1.00
251_T	254_L	2.564	1.00
292_S	319_F	2.556	1.00
104_Y	108_L	2.548	1.00
282_K	333_D	2.501	1.00
231_A	357_A	2.428	1.00
134_D	137_G	2.411	1.00
227_S	353_G	2.407	1.00
48_R	51_M	2.402	1.00
265_L	314_I	2.332	1.00
299_S	312_L	2.330	1.00
81_K	85_L	2.324	1.00
66_V	116_S	2.253	1.00
94_A	113_L	2.169	1.00
137_G	142_M	2.124	1.00
269_M	318_I	2.122	1.00
375_W	379_G	2.118	1.00
307_A	311_E	2.102	1.00
169_F	173_V	2.075	1.00
74_S	124_Q	2.036	1.00
51_M	104_Y	2.027	1.00
101_N	106_I	2.000	1.00
20_L	150_Q	1.999	1.00
281_G	284_L	1.971	1.00
96_T	179_A	1.900	1.00
101_N	110_T	1.851	1.00
85_L	190_W	1.798	1.00
92_V	186_G	1.796	1.00
78_G	82_L	1.793	1.00
275_Y	279_R	1.777	1.00
94_A	114_L	1.749	1.00
55_F	107_L	1.715	1.00
72_R	76_K	1.710	1.00
301_L	375_W	1.705	1.00
235_L	361_D	1.689	1.00
58_G	112_V	1.686	1.00
98_F	110_T	1.686	1.00
58_G	108_L	1.685	1.00
296_F	312_L	1.672	1.00
71_A	75_D	1.665	1.00
66_V	119_S	1.661	1.00
99_A	179_A	1.648	1.00
296_F	319_F	1.647	1.00
62_M	66_V	1.644	1.00
301_L	378_I	1.631	1.00
187_L	191_L	1.630	1.00
47_A	104_Y	1.626	1.00
294_M	385_M	1.624	1.00
223_F	349_T	1.613	1.00
85_L	186_G	1.602	1.00
211_P	215_R	1.594	1.00
176_L	180_I	1.584	1.00
250_L	254_L	1.577	1.00
47_A	51_M	1.567	1.00
66_V	69_F	1.555	1.00
209_I	212_S	1.531	1.00
294_M	382_G	1.504	1.00
289_A	322_I	1.480	1.00
363_I	367_I	1.466	1.00
92_V	179_A	1.465	1.00
287_L	385_M	1.444	1.00
170_S	173_V	1.444	1.00
106_I	110_T	1.431	1.00
105_F	108_L	1.420	1.00
73_H	83_L	1.411	1.00
82_L	86_L	1.408	1.00
262_A	317_A	1.405	1.00
273_A	322_I	1.400	1.00
173_V	176_L	1.400	1.00
69_F	72_R	1.400	1.00
49_P	366_E	1.385	1.00
89_L	186_G	1.382	1.00
232_A	381_L	1.380	1.00
307_A	310_L	1.370	1.00
212_S	338_K	1.365	1.00
284_L	287_L	1.365	1.00
274_G	278_K	1.361	1.00
372_A	375_W	1.351	1.00
74_S	80_R	1.348	1.00
368_W	372_A	1.346	1.00
82_L	85_L	1.342	1.00
87_C	117_F	1.342	1.00
142_M	278_K	1.333	1.00
130_R	140_T	1.331	1.00
27_G	151_I	1.325	1.00
305_T	308_V	1.320	1.00
92_V	183_V	1.307	1.00
73_H	77_Q	1.306	1.00
77_Q	83_L	1.298	1.00
283_R	287_L	1.292	1.00
234_N	354_W	1.290	1.00
86_L	90_F	1.279	1.00
61_I	355_I	1.276	1.00
212_S	215_R	1.269	1.00
298_A	302_M	1.267	1.00
208_E	211_P	1.264	1.00
98_F	107_L	1.263	1.00
164_E	168_G	1.261	1.00
160_P	260_G	1.260	1.00
245_I	255_T	1.260	1.00
131_E	339_I	1.258	1.00
276_Y	280_I	1.251	1.00
372_A	376_L	1.249	1.00
265_L	269_M	1.249	1.00
371_H	375_W	1.247	1.00
188_I	192_F	1.246	1.00
272_I	275_Y	1.242	1.00
90_F	94_A	1.242	1.00
269_M	272_I	1.229	1.00
75_D	341_S	1.228	1.00
266_E	321_G	1.223	1.00
291_V	385_M	1.219	1.00
245_I	252_D	1.208	1.00
39_I	43_D	1.180	1.00
140_T	333_D	1.172	1.00
135_R	140_T	1.170	1.00
207_V	210_L	1.165	1.00
96_T	100_W	1.165	1.00
288_I	292_S	1.165	1.00
275_Y	278_K	1.165	1.00
244_I	250_L	1.163	1.00
254_L	257_E	1.156	1.00
379_G	383_I	1.151	1.00
298_A	378_I	1.149	1.00
207_V	211_P	1.148	1.00
165_L	173_V	1.147	1.00
296_F	316_N	1.146	1.00
129_A	147_L	1.144	1.00
189_V	193_L	1.143	1.00
271_L	275_Y	1.136	1.00
57_T	359_S	1.128	1.00
219_T	223_F	1.121	1.00
375_W	378_I	1.108	1.00
353_G	357_A	1.107	1.00
97_L	100_W	1.100	1.00
167_M	253_K	1.098	1.00
362_G	366_E	1.098	1.00
64_I	355_I	1.097	1.00
81_K	195_S	1.097	1.00
293_G	381_L	1.092	1.00
88_C	186_G	1.089	1.00
220_R	224_V	1.087	1.00
289_A	323_L	1.086	1.00
294_M	298_A	1.085	1.00
291_V	295_C	1.083	1.00
296_F	315_L	1.082	1.00
287_L	389_L	1.073	1.00
382_G	386_I	1.073	1.00
290_I	384_A	1.071	1.00
50_I	366_E	1.068	1.00
243_F	248_L	1.064	1.00
62_M	115_S	1.063	1.00
257_E	261_I	1.057	1.00
37_L	52_V	1.055	1.00
160_P	164_E	1.053	1.00
77_Q	82_L	1.050	1.00
281_G	285_L	1.048	1.00
338_K	341_S	1.046	1.00
50_I	54_F	1.045	1.00
85_L	189_V	1.042	1.00
82_L	195_S	1.042	1.00
51_M	108_L	1.036	1.00
376_L	380_M	1.031	1.00
214_H	220_R	1.030	1.00
29_A	32_L	1.027	1.00
22_V	121_A	1.025	1.00
57_T	355_I	1.022	1.00
217_R	221_L	1.022	1.00
91_G	117_F	1.020	1.00
216_K	220_R	1.018	1.00
15_T	132_H	1.018	1.00
180_I	184_V	1.018	1.00
93_L	97_L	1.017	1.00
54_F	359_S	1.010	1.00
97_L	106_I	1.009	1.00
311_E	314_I	1.007	1.00
78_G	83_L	1.006	1.00
109_S	113_L	1.004	1.00
284_L	288_I	1.000	1.00
303_A	312_L	0.997	1.00
59_S	115_S	0.997	1.00
225_V	388_L	0.994	1.00
59_S	118_A	0.989	1.00
75_D	80_R	0.987	1.00
289_A	319_F	0.975	1.00
268_P	271_L	0.975	1.00
142_M	146_F	0.970	1.00
331_F	346_Y	0.967	1.00
28_I	158_G	0.967	1.00
44_E	172_K	0.962	1.00
58_G	62_M	0.960	1.00
68_Q	72_R	0.959	1.00
71_A	340_G	0.956	1.00
80_R	127_A	0.956	1.00
100_W	176_L	0.954	1.00
133_A	137_G	0.948	1.00
299_S	302_M	0.947	1.00
128_L	193_L	0.941	1.00
183_V	187_L	0.941	1.00
191_L	194_P	0.936	1.00
83_L	86_L	0.934	1.00
378_I	382_G	0.932	1.00
64_I	348_N	0.931	1.00
364_M	368_W	0.927	1.00
376_L	379_G	0.926	1.00
18_A	188_I	0.924	1.00
243_F	247_E	0.924	1.00
186_G	190_W	0.921	1.00
230_W	350_S	0.920	1.00
99_A	172_K	0.914	1.00
111_G	115_S	0.913	1.00
268_P	272_I	0.913	1.00
53_G	57_T	0.913	1.00
54_F	58_G	0.909	1.00
287_L	291_V	0.908	1.00
39_I	44_E	0.905	1.00
102_R	172_K	0.899	1.00
196_I	199_N	0.896	1.00
206_P	209_I	0.895	1.00
208_E	212_S	0.894	1.00
42_A	49_P	0.894	1.00
106_I	109_S	0.893	1.00
211_P	214_H	0.890	1.00
85_L	89_L	0.889	1.00
206_P	211_P	0.889	1.00
24_F	154_A	0.887	1.00
80_R	195_S	0.886	1.00
43_D	46_K	0.886	1.00
264_G	268_P	0.886	1.00
297_Y	301_L	0.882	1.00
53_G	239_N	0.882	1.00
280_I	285_L	0.881	1.00
265_L	268_P	0.877	1.00
280_I	284_L	0.876	1.00
218_D	221_L	0.865	1.00
130_R	339_I	0.865	1.00
277_M	326_I	0.864	1.00
287_L	290_I	0.863	1.00
296_F	299_S	0.863	1.00
217_R	220_R	0.859	1.00
294_M	381_L	0.858	1.00
161_L	164_E	0.856	1.00
86_L	89_L	0.855	1.00
226_C	346_Y	0.849	1.00
292_S	296_F	0.848	1.00
51_M	54_F	0.848	1.00
152_S	266_E	0.847	1.00
290_I	385_M	0.845	1.00
123_P	126_F	0.845	1.00
253_K	257_E	0.845	1.00
294_M	378_I	0.844	1.00
325_G	329_L	0.830	1.00
165_L	169_F	0.828	1.00
142_M	275_Y	0.826	1.00
179_A	183_V	0.825	1.00
173_V	177_T	0.825	1.00
44_E	171_F	0.822	1.00
163_Y	256_G	0.821	1.00
295_C	299_S	0.819	1.00
67_S	347_A	0.819	1.00
311_E	315_L	0.818	1.00
308_V	311_E	0.817	1.00
78_G	195_S	0.816	1.00
176_L	179_A	0.813	1.00
269_M	273_A	0.812	1.00
91_G	182_F	0.809	1.00
228_M	380_M	0.807	1.00
201_P	204_T	0.807	1.00
22_V	84_I	0.807	1.00
285_L	288_I	0.805	1.00
95_C	179_A	0.803	1.00
89_L	93_L	0.801	1.00
42_A	52_V	0.800	1.00
239_N	362_G	0.796	1.00
373_L	376_L	0.796	1.00
55_F	108_L	0.795	1.00
36_T	166_A	0.795	1.00
16_A	133_A	0.793	1.00
329_L	333_D	0.792	1.00
87_C	124_Q	0.791	1.00
29_A	111_G	0.791	1.00
95_C	114_L	0.789	1.00
84_I	128_L	0.786	1.00
258_M	310_L	0.784	1.00
95_C	178_A	0.783	1.00
66_V	70_L	0.783	1.00
21_L	185_C	0.782	1.00
288_I	291_V	0.782	1.00
291_V	294_M	0.778	1.00
96_T	176_L	0.776	1.00
144_S	329_L	0.773	1.00
363_I	366_E	0.772	1.00
180_I	183_V	0.772	1.00
332_Q	343_T	0.771	1.00
89_L	92_V	0.769	1.00
78_G	81_K	0.765	1.00
111_G	114_L	0.764	1.00
70_L	119_S	0.764	1.00
206_P	212_S	0.764	1.00
244_I	309_E	0.760	1.00
81_K	190_W	0.758	1.00
344_T	348_N	0.757	1.00
303_A	308_V	0.755	1.00
136_T	142_M	0.749	1.00
59_S	63_G	0.748	1.00
386_I	389_L	0.747	1.00
30_G	63_G	0.745	1.00
360_V	363_I	0.744	1.00
72_R	341_S	0.739	1.00
302_M	375_W	0.736	1.00
369_S	372_A	0.736	1.00
157_I	160_P	0.734	1.00
194_P	197_Q	0.734	1.00
29_A	178_A	0.729	1.00
123_P	127_A	0.728	1.00
261_I	310_L	0.724	1.00
216_K	334_L	0.723	1.00
156_V	264_G	0.722	1.00
109_S	112_V	0.721	1.00
272_I	276_Y	0.721	1.00
155_W	263_A	0.717	1.00
98_F	101_N	0.715	1.00
298_A	301_L	0.713	1.00
54_F	108_L	0.711	1.00
229_M	323_L	0.710	1.00
20_L	146_F	0.709	1.00
25_L	29_A	0.708	1.00
18_A	185_C	0.703	1.00
31_A	155_W	0.702	1.00
359_S	363_I	0.702	1.00
32_L	174_M	0.701	1.00
224_V	228_M	0.700	1.00
260_G	264_G	0.695	1.00
226_C	230_W	0.691	1.00
212_S	337_E	0.688	1.00
205_Q	208_E	0.686	1.00
352_V	356_I	0.685	1.00
130_R	144_S	0.683	1.00
24_F	157_I	0.683	1.00
128_L	132_H	0.682	1.00
293_G	319_F	0.682	1.00
178_A	181_A	0.682	1.00
144_S	332_Q	0.681	1.00
276_Y	285_L	0.679	1.00
380_M	384_A	0.678	1.00
152_S	267_I	0.675	1.00
166_A	174_M	0.673	1.00
173_V	180_I	0.673	1.00
244_I	248_L	0.672	1.00
373_L	377_A	0.672	1.00
205_Q	209_I	0.672	1.00
308_V	312_L	0.671	1.00
81_K	194_P	0.671	1.00
28_I	178_A	0.670	1.00
56_F	238_I	0.668	1.00
177_T	180_I	0.668	1.00
130_R	332_Q	0.667	1.00
149_A	267_I	0.667	1.00
310_L	314_I	0.664	1.00
98_F	114_L	0.664	1.00
377_A	381_L	0.663	1.00
200_I	204_T	0.662	1.00
306_P	310_L	0.662	1.00
374_F	378_I	0.662	1.00
154_A	158_G	0.661	1.00
84_I	189_V	0.660	1.00
240_M	313_Q	0.658	1.00
55_F	104_Y	0.657	1.00
299_S	303_A	0.657	1.00
88_C	185_C	0.656	1.00
370_Y	373_L	0.655	1.00
289_A	326_I	0.654	1.00
262_A	313_Q	0.653	1.00
65_L	68_Q	0.653	1.00
119_S	123_P	0.653	1.00
150_Q	154_A	0.649	1.00
23_A	147_L	0.649	1.00
235_L	377_A	0.649	1.00
228_M	384_A	0.649	1.00
50_I	359_S	0.647	1.00
29_A	91_G	0.646	1.00
92_V	96_T	0.645	1.00
159_P	260_G	0.644	1.00
120_T	124_Q	0.642	1.00
381_L	385_M	0.640	1.00
149_A	271_L	0.636	1.00
187_L	190_W	0.636	1.00
47_A	52_V	0.634	1.00
250_L	258_M	0.634	1.00
187_L	192_F	0.633	1.00
172_K	176_L	0.633	1.00
42_A	47_A	0.632	1.00
197_Q	200_I	0.631	1.00
315_L	319_F	0.631	1.00
91_G	118_A	0.631	1.00
65_L	69_F	0.629	1.00
111_G	122_N	0.629	1.00
61_I	64_I	0.628	1.00
332_Q	339_I	0.627	1.00
74_S	83_L	0.625	1.00
223_F	346_Y	0.623	1.00
51_M	55_F	0.622	1.00
93_L	96_T	0.622	1.00
70_L	73_H	0.621	1.00
322_I	326_I	0.621	1.00
50_I	53_G	0.619	1.00
199_N	203_V	0.618	1.00
129_A	143_F	0.615	1.00
98_F	175_Y	0.615	1.00
16_A	143_F	0.615	1.00
254_L	258_M	0.614	1.00
84_I	125_M	0.614	1.00
164_E	167_M	0.612	1.00
365_V	373_L	0.611	1.00
57_T	358_G	0.608	1.00
64_I	351_R	0.606	1.00
63_G	351_R	0.606	1.00
53_G	362_G	0.604	1.00
24_F	150_Q	0.603	1.00
164_E	257_E	0.602	1.00
221_L	387_C	0.599	1.00
261_I	265_L	0.598	1.00
368_W	371_H	0.597	1.00
220_R	223_F	0.596	1.00
126_F	147_L	0.595	1.00
102_R	105_F	0.594	1.00
36_T	174_M	0.594	1.00
163_Y	257_E	0.594	1.00
162_A	174_M	0.593	1.00
110_T	113_L	0.593	1.00
67_S	344_T	0.591	1.00
224_V	387_C	0.591	1.00
100_W	106_I	0.590	1.00
163_Y	260_G	0.590	1.00
238_I	241_P	0.588	1.00
140_T	332_Q	0.588	1.00
59_S	111_G	0.584	1.00
261_I	314_I	0.582	1.00
273_A	276_Y	0.581	1.00
210_L	338_K	0.579	1.00
18_A	192_F	0.578	1.00
244_I	258_M	0.578	1.00
368_W	373_L	0.578	1.00
226_C	350_S	0.578	1.00
70_L	123_P	0.576	1.00
269_M	321_G	0.575	1.00
210_L	214_H	0.575	1.00
149_A	152_S	0.574	1.00
224_V	227_S	0.574	1.00
91_G	121_A	0.572	1.00
181_A	184_V	0.571	1.00
239_N	361_D	0.569	1.00
242_L	245_I	0.569	1.00
141_V	329_L	0.568	1.00
188_I	191_L	0.568	1.00
25_L	181_A	0.568	1.00
15_T	18_A	0.567	1.00
17_A	20_L	0.565	1.00
184_V	188_I	0.565	1.00
97_L	101_N	0.565	1.00
310_L	313_Q	0.565	1.00
231_A	380_M	0.565	1.00
361_D	373_L	0.565	1.00
207_V	212_S	0.564	1.00
293_G	296_F	0.562	1.00
287_L	388_L	0.560	1.00
239_N	242_L	0.559	1.00
51_M	105_F	0.557	1.00
301_L	371_H	0.556	1.00
216_K	338_K	0.554	1.00
223_F	227_S	0.552	1.00
85_L	88_C	0.550	1.00
339_I	343_T	0.550	1.00
317_A	321_G	0.549	1.00
287_L	294_M	0.549	1.00
60_A	358_G	0.547	1.00
355_I	359_S	0.547	1.00
141_V	274_G	0.546	1.00
314_I	318_I	0.546	1.00
170_S	174_M	0.545	1.00
193_L	197_Q	0.545	1.00
57_T	61_I	0.544	1.00
328_M	332_Q	0.542	1.00
160_P	163_Y	0.541	1.00
148_R	152_S	0.541	1.00
330_Y	334_L	0.540	1.00
198_R	201_P	0.540	1.00
258_M	261_I	0.539	1.00
312_L	315_L	0.539	1.00
356_I	360_V	0.539	1.00
184_V	187_L	0.539	1.00
213_T	342_A	0.538	1.00
383_I	387_C	0.538	1.00
215_R	220_R	0.537	1.00
95_C	111_G	0.535	1.00
32_L	162_A	0.535	1.00
353_G	356_I	0.535	1.00
385_M	389_L	0.534	1.00
218_D	334_L	0.533	1.00
159_P	259_I	0.532	1.00
131_E	196_I	0.532	1.00
23_A	27_G	0.530	1.00
314_I	317_A	0.530	1.00
182_F	186_G	0.530	1.00
70_L	83_L	0.529	1.00
48_R	366_E	0.529	1.00
127_A	340_G	0.528	1.00
383_I	386_I	0.527	1.00
331_F	334_L	0.527	1.00
67_S	348_N	0.526	1.00
22_V	189_V	0.526	1.00
200_I	203_V	0.525	1.00
263_A	267_I	0.523	1.00
193_L	196_I	0.523	1.00
227_S	349_T	0.522	1.00
15_T	194_P	0.521	1.00
38_S	42_A	0.521	1.00
68_Q	348_N	0.520	1.00
312_L	316_N	0.519	1.00
87_C	121_A	0.517	1.00
365_V	370_Y	0.516	1.00
158_G	162_A	0.514	1.00
340_G	344_T	0.510	1.00
369_S	373_L	0.510	1.00
244_I	255_T	0.510	1.00
98_F	111_G	0.509	1.00
49_P	365_V	0.509	1.00
272_I	318_I	0.507	1.00
276_Y	279_R	0.507	1.00
43_D	245_I	0.506	1.00
125_M	128_L	0.504	1.00
74_S	340_G	0.504	1.00
379_G	386_I	0.503	1.00
257_E	260_G	0.503	1.00
372_A	379_G	0.502	1.00
156_V	260_G	0.501	1.00
166_A	169_F	0.501	1.00
84_I	124_Q	0.501	1.00
177_T	181_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1pw4A	1	0.9695	100	0.153	Contact Map
2gfpA	2	0.9442	100	0.174	Contact Map
3o7qA	1	0.9619	100	0.179	Contact Map
3wdoA	1	0.9721	100	0.183	Contact Map
4j05A	3	0.9188	100	0.188	Contact Map
4pypA	1	0.9569	100	0.209	Contact Map
2cfqA	1	0.967	100	0.223	Contact Map
4xnjA	1	0.9721	100	0.241	Contact Map
4w6vA	1	0.9569	100	0.246	Contact Map
4zw9A	1	0.9695	100	0.262	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0144 seconds.