GREMLIN Database
ACRB - Multidrug efflux pump subunit AcrB
UniProt: P31224 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG11704
Length: 1049 (999)
Sequences: 15875 (10100)
Seq/√Len: 319.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
959_G962_E4.1571.00
244_E247_G4.0771.00
309_E312_K3.9681.00
311_A314_E3.9401.00
247_G263_R3.9141.00
62_T88_V3.8461.00
730_D808_R3.6841.00
47_A88_V3.6461.00
915_A1009_G3.4561.00
591_L625_G3.4401.00
530_S1020_F3.4231.00
304_A334_K3.2391.00
426_P429_E3.1731.00
248_K263_R3.1431.00
425_L433_K3.1391.00
150_T153_D3.1091.00
3_N7_D3.0761.00
586_R589_K3.0731.00
532_G965_L3.0481.00
75_L92_L2.8941.00
188_M203_V2.8851.00
694_K697_Q2.8441.00
691_G694_K2.8431.00
760_N771_V2.8351.00
732_D806_S2.8151.00
280_E595_T2.7641.00
62_T82_S2.7621.00
169_T305_A2.7601.00
731_I736_A2.7301.00
165_A309_E2.7151.00
58_Q823_P2.6651.00
736_A746_I2.6571.00
282_N608_S2.6421.00
307_R328_D2.6251.00
142_V158_V2.6171.00
742_S745_D2.5961.00
247_G268_I2.5871.00
193_L198_L2.5761.00
345_V349_I2.5621.00
705_E708_K2.5611.00
897_I950_K2.5411.00
243_T247_G2.5231.00
76_M93_T2.5161.00
262_L268_I2.4861.00
588_Q592_N2.4341.00
378_G480_L2.4161.00
251_L265_V2.4071.00
314_E322_K2.3971.00
154_I321_L2.3781.00
189_N192_E2.3761.00
703_L707_A2.3611.00
528_T969_R2.3611.00
76_M95_E2.3331.00
697_Q701_Q2.3301.00
698_A855_V2.3261.00
958_K966_D2.3131.00
732_D735_K2.2861.00
835_K843_L2.2601.00
301_D305_A2.2561.00
382_V476_S2.2331.00
919_R1005_T2.2301.00
633_D636_D2.2271.00
157_Y321_L2.2181.00
602_E654_A2.2121.00
843_L846_Q2.1871.00
784_D787_G2.1861.00
204_I773_V2.1651.00
952_L956_E2.1591.00
187_W269_E2.1431.00
186_I207_I2.1371.00
574_T629_V2.1351.00
188_M200_P2.1331.00
536_R961_I2.1211.00
182_Y270_L2.1201.00
730_D806_S2.1101.00
246_F262_L2.0941.00
419_V425_L2.0861.00
953_M1026_F2.0711.00
252_K255_Q2.0681.00
603_K650_R2.0651.00
731_I746_I2.0531.00
964_T1027_V2.0421.00
952_L958_K2.0391.00
419_V437_Q2.0341.00
703_L718_P2.0331.00
728_K810_E2.0181.00
342_K346_E2.0161.00
836_S839_E2.0131.00
706_A844_M2.0121.00
787_G802_S2.0031.00
578_L582_A1.9921.00
715_S830_Q1.9871.00
800_P803_A1.9711.00
990_V1008_M1.9671.00
713_L716_V1.9551.00
607_E632_K1.9481.00
598_Y651_A1.9361.00
65_I69_M1.9251.00
709_H843_L1.9211.00
429_E433_K1.9191.00
729_I805_S1.9171.00
242_S245_E1.9141.00
533_G537_S1.8951.00
700_N703_L1.8871.00
305_A308_A1.8871.00
55_K59_D1.8831.00
143_I324_V1.8761.00
280_E588_Q1.8721.00
741_V791_V1.8661.00
527_Y968_V1.8631.00
687_Q702_L1.8561.00
522_K525_H1.8511.00
57_V61_V1.8461.00
65_I90_I1.8461.00
952_L966_D1.8321.00
537_S540_R1.8281.00
10_I889_A1.8261.00
415_N437_Q1.8181.00
450_S479_A1.8171.00
522_K526_H1.8161.00
244_E248_K1.8111.00
267_K776_E1.8101.00
961_I1027_V1.8011.00
7_D428_K1.7971.00
593_E596_H1.7911.00
547_I551_G1.7891.00
782_L785_D1.7851.00
703_L716_V1.7801.00
371_A484_V1.7771.00
149_M320_G1.7721.00
698_A701_Q1.7701.00
24_G28_L1.7541.00
204_I208_K1.7541.00
190_P779_Y1.7491.00
554_Y557_V1.7461.00
597_Y654_A1.7431.00
162_M313_M1.7351.00
538_T1027_V1.7341.00
69_M92_L1.7331.00
845_E867_R1.7301.00
183_A772_Y1.7241.00
699_R825_M1.7231.00
193_L265_V1.7221.00
29_K384_A1.7171.00
735_K738_A1.7171.00
419_V423_E1.7161.00
542_L546_L1.7121.00
181_Q273_E1.7121.00
304_A308_A1.7101.00
147_G284_Q1.7011.00
62_T80_S1.7001.00
8_R893_E1.6951.00
591_L611_A1.6921.00
92_L107_V1.6921.00
241_T245_E1.6831.00
553_A557_V1.6821.00
650_R654_A1.6811.00
921_L1005_T1.6671.00
418_R423_E1.6591.00
3_N432_R1.6591.00
728_K808_R1.6571.00
199_T202_D1.6541.00
528_T532_G1.6531.00
301_D304_A1.6471.00
603_K654_A1.6461.00
307_R325_Y1.6311.00
20_M377_L1.6211.00
592_N596_H1.6201.00
680_F829_G1.6181.00
533_G536_R1.6111.00
338_H342_K1.6101.00
65_I114_A1.6051.00
741_V804_F1.6051.00
597_Y657_Q1.6051.00
69_M90_I1.5991.00
388_F472_I1.5931.00
842_E845_E1.5931.00
713_L840_A1.5901.00
696_T700_N1.5901.00
211_N760_N1.5871.00
776_E779_Y1.5851.00
605_N639_G1.5741.00
640_E646_A1.5731.00
74_N98_T1.5711.00
198_L202_D1.5691.00
386_F476_S1.5691.00
711_D843_L1.5691.00
572_F629_V1.5641.00
248_K261_L1.5581.00
652_T715_S1.5581.00
594_V655_F1.5561.00
576_V591_L1.5521.00
141_G281_F1.5501.00
189_N267_K1.5501.00
746_I804_F1.5491.00
736_A741_V1.5381.00
526_H529_D1.5341.00
701_Q704_A1.5301.00
418_R970_M1.5281.00
415_N418_R1.5271.00
26_A381_A1.5271.00
240_L246_F1.5241.00
587_T625_G1.5191.00
835_K839_E1.5151.00
530_S533_G1.5151.00
576_V594_V1.5101.00
99_D102_I1.5101.00
479_A483_L1.5101.00
704_A708_K1.5061.00
82_S88_V1.5061.00
416_V493_C1.5011.00
561_S838_G1.4991.00
904_V942_A1.4921.00
297_A302_T1.4871.00
188_M193_L1.4851.00
205_T209_A1.4841.00
542_L1028_V1.4831.00
207_I249_I1.4831.00
885_F898_P1.4771.00
78_M92_L1.4751.00
201_V205_T1.4711.00
549_V553_A1.4691.00
839_E842_E1.4651.00
192_E196_F1.4621.00
307_R311_A1.4611.00
142_V162_M1.4601.00
729_I807_S1.4571.00
578_L590_V1.4551.00
598_Y606_V1.4551.00
792_R798_M1.4471.00
172_V291_I1.4451.00
694_K698_A1.4441.00
649_M653_R1.4421.00
202_D205_T1.4411.00
472_I476_S1.4391.00
596_H599_L1.4381.00
759_V773_V1.4371.00
47_A62_T1.4341.00
654_A657_Q1.4331.00
554_Y558_R1.4291.00
758_Y770_K1.4271.00
961_I965_L1.4221.00
951_D955_K1.4211.00
639_G650_R1.4211.00
98_T103_A1.4151.00
328_D331_P1.4151.00
379_T477_A1.4061.00
865_Q868_L1.4061.00
202_D792_R1.4051.00
701_Q705_E1.4031.00
339_E342_K1.4011.00
47_A122_V1.3961.00
632_K636_D1.3941.00
408_D940_K1.3931.00
234_I754_W1.3931.00
582_A586_R1.3891.00
240_L249_I1.3891.00
576_V625_G1.3871.00
317_F323_I1.3861.00
538_T1031_R1.3851.00
250_L259_R1.3851.00
192_E195_K1.3821.00
603_K647_I1.3811.00
205_T208_K1.3781.00
47_A65_I1.3771.00
14_V886_L1.3761.00
61_V122_V1.3761.00
43_V107_V1.3741.00
605_N632_K1.3701.00
572_F648_T1.3661.00
526_H530_S1.3621.00
412_V435_M1.3611.00
953_M1030_R1.3611.00
793_A797_Q1.3601.00
143_I322_K1.3591.00
349_I353_L1.3591.00
689_G855_V1.3591.00
595_T599_L1.3561.00
163_K167_S1.3551.00
115_M124_Q1.3531.00
66_E818_R1.3531.00
261_L264_D1.3491.00
592_N595_T1.3411.00
34_Q569_Q1.3411.00
704_A707_A1.3401.00
209_A737_Q1.3371.00
382_V386_F1.3361.00
709_H846_Q1.3341.00
305_A309_E1.3301.00
983_I1008_M1.3301.00
199_T792_R1.3281.00
423_E433_K1.3271.00
170_S305_A1.3261.00
45_I69_M1.3251.00
609_V627_A1.3241.00
278_I588_Q1.3241.00
983_I1012_V1.3221.00
425_L429_E1.3171.00
63_Q818_R1.3151.00
352_F369_T1.3111.00
112_Q115_M1.3111.00
77_Y820_N1.3101.00
613_N625_G1.3101.00
589_K593_E1.3091.00
599_L609_V1.3071.00
699_R718_P1.3031.00
846_Q849_S1.3021.00
146_D320_G1.3001.00
77_Y93_T1.3001.00
605_N647_I1.2981.00
791_V804_F1.2981.00
279_A288_G1.2971.00
22_A381_A1.2941.00
19_I378_G1.2921.00
57_V82_S1.2911.00
713_L829_G1.2861.00
53_D56_T1.2861.00
562_S922_T1.2841.00
551_G555_L1.2831.00
69_M107_V1.2811.00
543_V547_I1.2791.00
653_R656_S1.2791.00
597_Y603_K1.2791.00
687_Q695_L1.2771.00
202_D252_K1.2761.00
543_V550_V1.2721.00
528_T966_D1.2701.00
245_E248_K1.2681.00
572_F651_A1.2671.00
950_K955_K1.2671.00
606_V629_V1.2671.00
27_I341_V1.2621.00
165_A316_F1.2601.00
374_V488_L1.2551.00
433_K436_G1.2531.00
3_N436_G1.2511.00
13_W895_W1.2481.00
958_K962_E1.2481.00
962_E966_D1.2481.00
58_Q818_R1.2471.00
949_A964_T1.2471.00
6_I432_R1.2461.00
550_V554_Y1.2461.00
953_M960_L1.2431.00
711_D835_K1.2421.00
529_D533_G1.2411.00
4_F11_F1.2401.00
187_W267_K1.2391.00
938_S1014_A1.2391.00
157_Y161_N1.2381.00
156_D769_K1.2381.00
74_N95_E1.2361.00
26_A384_A1.2351.00
43_V104_Q1.2341.00
529_D532_G1.2331.00
960_L964_T1.2221.00
741_V794_A1.2211.00
310_L323_I1.2181.00
916_A927_F1.2171.00
149_M153_D1.2171.00
912_A931_L1.2151.00
528_T965_L1.2111.00
309_E313_M1.2101.00
726_Q812_G1.2091.00
308_A312_K1.2071.00
686_D819_Y1.2041.00
193_L203_V1.2041.00
690_L855_V1.2031.00
591_L613_N1.2031.00
419_V433_K1.2001.00
590_V593_E1.1991.00
785_D788_D1.1991.00
304_A307_R1.1991.00
534_I1024_V1.1981.00
6_I491_A1.1961.00
247_G267_K1.1951.00
607_E630_S1.1951.00
578_L587_T1.1941.00
140_V323_I1.1921.00
45_I92_L1.1921.00
218_Q231_N1.1911.00
596_H602_E1.1881.00
649_M652_T1.1841.00
845_E848_A1.1831.00
172_V302_T1.1781.00
593_E597_Y1.1711.00
976_L980_L1.1701.00
921_L1001_N1.1691.00
69_M78_M1.1681.00
822_L856_G1.1681.00
987_M1008_M1.1661.00
312_K315_P1.1651.00
415_N948_F1.1651.00
57_V88_V1.1631.00
688_A824_S1.1631.00
149_M321_L1.1611.00
546_L550_V1.1601.00
138_M306_I1.1561.00
206_A249_I1.1551.00
250_L261_L1.1521.00
864_Y868_L1.1511.00
793_A796_G1.1511.00
216_A236_A1.1501.00
166_I175_V1.1491.00
196_F260_V1.1481.00
20_M24_G1.1471.00
840_A843_L1.1471.00
65_I111_L1.1461.00
248_K734_E1.1461.00
744_N748_T1.1461.00
58_Q816_L1.1431.00
966_D969_R1.1411.00
142_V323_I1.1391.00
140_V325_Y1.1381.00
706_A713_L1.1371.00
334_K338_H1.1341.00
388_F394_T1.1331.00
751_G757_S1.1321.00
75_L78_M1.1311.00
593_E660_D1.1311.00
165_A313_M1.1271.00
110_K113_L1.1261.00
446_A482_V1.1251.00
819_Y860_T1.1241.00
871_N874_P1.1241.00
645_E649_M1.1231.00
752_A757_S1.1191.00
761_D770_K1.1191.00
447_M887_C1.1171.00
303_A330_T1.1171.00
68_N114_A1.1161.00
598_Y627_A1.1161.00
16_A488_L1.1161.00
76_M868_L1.1151.00
700_N704_A1.1141.00
534_I541_Y1.1141.00
702_L827_I1.1121.00
143_I284_Q1.1101.00
203_V265_V1.1101.00
308_A311_A1.1091.00
525_H529_D1.1081.00
339_E1000_Q1.1051.00
379_T476_S1.1051.00
558_R917_T1.1031.00
298_N301_D1.1011.00
531_V535_L1.0981.00
860_T864_Y1.0971.00
687_Q698_A1.0961.00
595_T611_A1.0951.00
589_K592_N1.0881.00
115_M123_Q1.0881.00
540_R543_V1.0881.00
951_D956_E1.0871.00
593_E658_I1.0861.00
597_Y658_I1.0851.00
948_F952_L1.0841.00
698_A851_L1.0841.00
694_K855_V1.0821.00
11_F890_A1.0811.00
950_K953_M1.0791.00
49_Y52_A1.0781.00
733_Q743_I1.0781.00
590_V658_I1.0771.00
956_E966_D1.0771.00
493_C497_L1.0741.00
790_Y798_M1.0741.00
235_I726_Q1.0721.00
521_E525_H1.0711.00
980_L984_L1.0701.00
914_L918_F1.0691.00
370_I492_L1.0681.00
689_G694_K1.0681.00
262_L266_A1.0681.00
562_S924_D1.0661.00
79_S93_T1.0651.00
138_M307_R1.0641.00
545_Y1021_F1.0631.00
693_E696_T1.0621.00
603_K651_A1.0611.00
707_A716_V1.0611.00
187_W776_E1.0601.00
185_R774_M1.0581.00
175_V289_L1.0581.00
155_S180_S1.0541.00
428_K432_R1.0511.00
201_V745_D1.0501.00
314_E323_I1.0481.00
415_N419_V1.0451.00
445_I482_V1.0431.00
788_D802_S1.0421.00
108_Q112_Q1.0411.00
646_A650_R1.0411.00
81_N91_T1.0391.00
598_Y629_V1.0391.00
915_A1005_T1.0381.00
78_M821_G1.0381.00
183_A273_E1.0361.00
5_F12_A1.0361.00
449_L940_K1.0331.00
68_N113_L1.0331.00
98_T106_Q1.0321.00
311_A315_P1.0311.00
66_E80_S1.0291.00
831_A840_A1.0271.00
80_S818_R1.0271.00
555_L914_L1.0251.00
979_S1015_T1.0251.00
141_G286_A1.0231.00
907_L1017_L1.0231.00
371_A489_T1.0221.00
702_L847_L1.0221.00
280_E592_N1.0201.00
572_F631_L1.0201.00
429_E432_R1.0201.00
46_S87_T1.0191.00
261_L734_E1.0181.00
924_D927_F1.0151.00
142_V154_I1.0151.00
444_G887_C1.0151.00
774_M780_R1.0111.00
539_G1028_V1.0111.00
948_F970_M1.0111.00
983_I1011_M1.0101.00
534_I1020_F1.0081.00
594_V658_I1.0081.00
586_R660_D1.0041.00
30_L380_F1.0001.00
688_A858_D0.9991.00
138_M303_A0.9971.00
709_H847_L0.9951.00
583_T586_R0.9941.00
20_M374_V0.9941.00
650_R653_R0.9931.00
251_L260_V0.9931.00
972_L976_L0.9931.00
547_I550_V0.9921.00
536_R539_G0.9901.00
420_M427_P0.9891.00
102_I106_Q0.9881.00
844_M859_W0.9881.00
281_F286_A0.9871.00
703_L827_I0.9871.00
382_V480_L0.9871.00
574_T598_Y0.9871.00
80_S90_I0.9871.00
979_S983_I0.9861.00
566_D645_E0.9861.00
148_T320_G0.9851.00
371_A409_A0.9831.00
45_I65_I0.9811.00
303_A307_R0.9811.00
163_K175_V0.9801.00
367_I492_L0.9791.00
550_V553_A0.9781.00
216_A750_L0.9771.00
214_V747_N0.9761.00
535_L1027_V0.9761.00
13_W17_I0.9751.00
518_R522_K0.9751.00
539_G543_V0.9741.00
370_I488_L0.9741.00
595_T609_V0.9741.00
892_Y943_I0.9741.00
519_M522_K0.9731.00
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529_D534_I0.5040.93
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411_V438_I0.5030.93
33_A469_Q0.5030.93
169_T306_I0.5030.93
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376_L398_M0.5030.93
207_I771_V0.5030.93
396_F1000_Q0.5020.93
346_E353_L0.5020.93
50_P125_Q0.5010.93
527_Y534_I0.5010.93
979_S982_F0.5010.93
873_A928_Q0.5010.93
348_I369_T0.5010.93
927_F1002_A0.5010.93
17_I886_L0.5010.93
698_A705_E0.5000.93
9_P494_A0.5000.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4k0jA 3 0.9161 100 0.226 Contact Map
4mt1A 3 0.9581 100 0.28 Contact Map
3w9iA 3 0.9781 100 0.288 Contact Map
3ne5A 3 0.9476 100 0.294 Contact Map
4dx5A 3 0.9886 100 0.302 Contact Map
3aqpA 1 0.6606 100 0.726 Contact Map
4r86A 1 0.2765 100 0.752 Contact Map
2ew9A 1 0.1411 88.4 0.98 Contact Map
4n8nA 1 0.0953 83.3 0.981 Contact Map
4u9rA 1 0.1296 71.5 0.983 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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