POTG - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

POTG - Putrescine transport ATP-binding protein PotG

UniProt:	P31134	Sequences: MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERQEDGLVLDSPGLVHPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHVRLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11630
Length:	377 (299)
Sequences:	10801 (8834)
Seq/√Len:	510.9

ECOLI - POTG MALK POTA FBPC CYSA PROV YCJV UGPC YDCT MODC METN OPPD DPPF OPPF YHES RBSA YEHX SAPD ARAG DPPD GSIA DDPD MACB YADG UUP DDPF MDLB CYDC MDLA MSBA ETTA FEPC MLAF TAUB CYDD SAPF HISP YTFR LSRA SSUB YOJI NIKE FHUC YECC YHDZ FECE PHNC LPTB GLNQ LIVG GLTL PHNK YPHE ZNUC THIQ PSTB SUFC ARTP MODF LIVF LOLD FTSE NIKD ALSA XYLG MGLA BTUD FETA YBBA YDDA YEJF PHNL CCMA YNJD YBHF YBIT
BACSU - MSMX OPUAA YURJ YVRA OPUCA OPUBA TAGH METN OPPD YKFD DPPD APPD YFIL YXLF APPF YDIF YHCH YCBN YDBJ YFMR YHAQ YHEH YVFR OPPF YTRB SUNT RBSA YFIC YFIB YKPA YGAD YKNV BMRA YKNU YFMM YUSV ECFA1 CYDD YWJA YHEI FHUC CYDC YFMF TCYN YLMA YCLP YTLC YXDL ECSA YKOD BCEA YVCR SKFE ECFA2 SUFC PSTB1 PSTB2 TCYC YXEO GLNQ NATA YJKB ARTM FTSE MNTB SSUB EXPZ ALBC YVRO YTHP YKNY ZNUC YCLH YYBJ YHCG YUFO YTRE YYDI
HALSA - Q9HHQ5 Q9HNZ9 Q9HMX3 Q9HMW0 Q9HR06 BTUDA Q9HMT3 Q9HMX2 Q9HRJ6 PSTB2 Q9HMG1 Q9HMU8 Q9HSQ7 Q9HRH8 PHNC Q9HHM2 Q9HMG6 Q9HNY3 Q9HRZ9 PSTB1 Q9HRV7 Y2317 Y1631 Q9HHR7 Q9HR96 Q9HQA8 Q9HS04 Q9HT03 Q9HR21 Q9HMC1 Q9HMW1
SULSO - Q97UF2 Q97YY4 Q97UY8 Q97ZC0 Q97VC1 Q7LX64 Q97UJ9 Q97VF5 Q97UH3 Q97YP3 Q97VH6 Q97VK9 Q97YP7 Q97VK8 Q97YK2 Q97X18 Q97VF4 Q97UD4 Q97YQ7 Q97YP8 Q980W0 Q97Z03 Q97U54 Q97UH4 PSTB Q97W42 Q7LXM4 Q97V01 Q7LY07 Q97V00 Y2030 Y1893 Q97VY4 Q97VM2 Q7LX80 Q97Z56 Q97UG5 Q97YP4 Q97Z96 Q97UC2 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
24_N	37_D	4.901	1.00
232_G	236_E	4.194	1.00
46_E	219_R	4.125	1.00
23_R	75_Q	4.018	1.00
21_E	41_T	3.961	1.00
49_A	217_A	3.683	1.00
33_H	36_D	3.531	1.00
22_I	25_L	3.200	1.00
214_M	235_E	3.057	1.00
26_T	73_A	2.961	1.00
233_E	236_E	2.824	1.00
36_D	227_K	2.803	1.00
135_G	140_Q	2.740	1.00
27_K	64_M	2.659	1.00
62_L	206_V	2.654	1.00
25_L	71_P	2.630	1.00
43_Y	46_E	2.418	1.00
48_F	221_A	2.407	1.00
26_T	37_D	2.402	1.00
24_N	39_S	2.359	1.00
109_E	113_A	2.339	1.00
106_M	114_F	2.326	1.00
21_E	77_M	2.306	1.00
28_S	33_H	2.249	1.00
22_I	40_L	2.183	1.00
27_K	72_S	2.109	1.00
127_A	131_N	2.086	1.00
23_R	77_M	2.018	1.00
26_T	33_H	1.956	1.00
64_M	71_P	1.925	1.00
122_P	125_E	1.921	1.00
62_L	172_L	1.889	1.00
105_H	148_H	1.883	1.00
28_S	72_S	1.866	1.00
79_D	169_K	1.839	1.00
42_I	48_F	1.815	1.00
27_K	69_E	1.791	1.00
64_M	76_I	1.791	1.00
35_V	64_M	1.738	1.00
133_M	165_A	1.700	1.00
320_V	323_I	1.695	1.00
63_R	69_E	1.653	1.00
142_F	145_R	1.639	1.00
109_E	144_K	1.627	1.00
319_E	322_H	1.606	1.00
283_A	287_V	1.585	1.00
63_R	68_F	1.546	1.00
66_A	172_L	1.538	1.00
129_R	132_E	1.515	1.00
312_G	315_F	1.494	1.00
173_L	203_C	1.482	1.00
40_L	221_A	1.464	1.00
128_S	132_E	1.443	1.00
121_L	124_A	1.441	1.00
322_H	325_Y	1.437	1.00
35_V	38_V	1.423	1.00
92_P	169_K	1.417	1.00
313_C	319_E	1.397	1.00
103_F	106_M	1.379	1.00
222_I	237_I	1.377	1.00
288_V	291_V	1.372	1.00
229_V	243_T	1.365	1.00
224_N	229_V	1.355	1.00
253_V	256_F	1.338	1.00
94_N	168_P	1.338	1.00
26_T	36_D	1.338	1.00
193_V	215_T	1.334	1.00
312_G	320_V	1.324	1.00
49_A	213_A	1.320	1.00
20_L	170_L	1.308	1.00
109_E	127_A	1.307	1.00
138_H	187_R	1.285	1.00
106_M	110_Q	1.274	1.00
23_R	39_S	1.273	1.00
295_V	298_R	1.271	1.00
314_N	317_V	1.269	1.00
272_S	275_L	1.263	1.00
129_R	167_R	1.261	1.00
235_E	239_E	1.256	1.00
65_L	204_V	1.247	1.00
281_V	284_D	1.241	1.00
131_N	135_G	1.240	1.00
145_R	149_Q	1.233	1.00
111_N	162_R	1.230	1.00
134_L	143_A	1.229	1.00
275_L	279_L	1.228	1.00
71_P	76_I	1.228	1.00
305_C	308_P	1.225	1.00
221_A	228_F	1.221	1.00
221_A	231_I	1.219	1.00
107_T	110_Q	1.212	1.00
125_E	128_S	1.202	1.00
124_A	128_S	1.191	1.00
110_Q	113_A	1.182	1.00
24_N	73_A	1.178	1.00
323_I	326_L	1.175	1.00
38_V	61_L	1.162	1.00
146_K	149_Q	1.158	1.00
284_D	288_V	1.152	1.00
51_L	222_I	1.152	1.00
109_E	131_N	1.151	1.00
300_E	304_L	1.149	1.00
28_S	73_A	1.146	1.00
35_V	61_L	1.142	1.00
267_G	270_L	1.134	1.00
269_V	272_S	1.128	1.00
284_D	287_V	1.119	1.00
275_L	278_P	1.118	1.00
286_S	290_N	1.118	1.00
131_N	139_M	1.118	1.00
305_C	309_P	1.111	1.00
312_G	319_E	1.110	1.00
300_E	303_M	1.109	1.00
292_P	296_A	1.109	1.00
268_L	272_S	1.107	1.00
318_G	321_I	1.104	1.00
94_N	163_S	1.096	1.00
228_F	231_I	1.093	1.00
311_N	314_N	1.092	1.00
22_I	65_L	1.089	1.00
29_Y	34_A	1.082	1.00
297_L	300_E	1.081	1.00
315_F	318_G	1.075	1.00
115_G	162_R	1.074	1.00
22_I	76_I	1.061	1.00
270_L	273_P	1.057	1.00
207_T	213_A	1.053	1.00
45_G	202_T	1.047	1.00
42_I	202_T	1.047	1.00
195_I	201_V	1.042	1.00
25_L	64_M	1.040	1.00
205_M	217_A	1.037	1.00
46_E	218_G	1.037	1.00
278_P	281_V	1.035	1.00
283_A	290_N	1.034	1.00
272_S	276_V	1.029	1.00
299_P	303_M	1.028	1.00
282_D	286_S	1.027	1.00
132_E	135_G	1.024	1.00
19_L	44_K	1.015	1.00
53_A	56_C	1.010	1.00
298_R	302_I	1.009	1.00
22_I	61_L	1.008	1.00
147_P	158_V	1.008	1.00
271_D	275_L	1.001	1.00
131_N	143_A	1.001	1.00
290_N	297_L	1.000	1.00
113_A	117_K	1.000	1.00
48_F	204_V	0.999	1.00
313_C	317_V	0.999	1.00
28_S	34_A	0.996	1.00
125_E	129_R	0.994	1.00
192_V	203_C	0.992	1.00
167_R	201_V	0.989	1.00
25_L	76_I	0.988	1.00
48_F	219_R	0.982	1.00
285_A	288_V	0.982	1.00
273_P	276_V	0.982	1.00
108_V	150_L	0.975	1.00
319_E	323_I	0.970	1.00
28_S	31_G	0.969	1.00
185_R	209_D	0.969	1.00
106_M	111_N	0.967	1.00
277_H	280_K	0.966	1.00
304_L	307_E	0.965	1.00
306_E	310_A	0.956	1.00
311_N	317_V	0.955	1.00
324_A	327_G	0.950	1.00
123_K	126_I	0.950	1.00
113_A	130_V	0.948	1.00
160_L	173_L	0.940	1.00
323_I	327_G	0.938	1.00
301_K	304_L	0.934	1.00
299_P	306_E	0.932	1.00
315_F	319_E	0.932	1.00
313_C	323_I	0.931	1.00
20_L	78_L	0.930	1.00
320_V	326_L	0.927	1.00
137_V	161_A	0.925	1.00
287_V	291_V	0.921	1.00
96_M	156_Q	0.917	1.00
303_M	306_E	0.916	1.00
317_V	320_V	0.914	1.00
287_V	290_N	0.913	1.00
102_L	111_N	0.910	1.00
96_M	163_S	0.910	1.00
320_V	327_G	0.909	1.00
266_D	270_L	0.907	1.00
270_L	274_G	0.906	1.00
213_A	217_A	0.902	1.00
317_V	323_I	0.902	1.00
313_C	316_A	0.901	1.00
224_N	227_K	0.900	1.00
236_E	240_H	0.892	1.00
253_V	258_G	0.890	1.00
248_E	252_S	0.888	1.00
314_N	318_G	0.886	1.00
270_L	275_L	0.882	1.00
182_K	186_D	0.877	1.00
278_P	282_D	0.875	1.00
309_P	313_C	0.872	1.00
274_G	277_H	0.872	1.00
238_Y	241_P	0.871	1.00
109_E	130_V	0.857	1.00
114_F	118_Q	0.855	1.00
18_P	77_M	0.854	1.00
61_L	223_M	0.854	1.00
253_V	257_E	0.850	1.00
171_L	201_V	0.850	1.00
268_L	273_P	0.848	1.00
280_K	283_A	0.847	1.00
126_I	130_V	0.847	1.00
317_V	321_I	0.842	1.00
219_R	230_Q	0.841	1.00
111_N	147_P	0.841	1.00
313_C	320_V	0.839	1.00
121_L	125_E	0.838	1.00
249_F	252_S	0.838	1.00
30_D	33_H	0.835	1.00
112_I	165_A	0.835	1.00
109_E	143_A	0.832	1.00
132_E	136_L	0.826	1.00
19_L	41_T	0.821	1.00
43_Y	219_R	0.821	1.00
285_A	289_D	0.819	1.00
282_D	285_A	0.818	1.00
314_N	319_E	0.817	1.00
104_P	148_H	0.817	1.00
311_N	319_E	0.814	1.00
279_L	286_S	0.814	1.00
219_R	231_I	0.812	1.00
251_G	254_N	0.811	1.00
107_T	146_K	0.811	1.00
66_A	95_M	0.810	1.00
193_V	216_M	0.810	1.00
27_K	60_T	0.809	1.00
250_I	253_V	0.807	1.00
279_L	283_A	0.806	1.00
56_C	223_M	0.805	1.00
316_A	320_V	0.802	1.00
289_D	293_V	0.794	1.00
123_K	127_A	0.792	1.00
293_V	296_A	0.792	1.00
246_S	249_F	0.791	1.00
112_I	115_G	0.790	1.00
247_A	251_G	0.790	1.00
45_G	200_G	0.790	1.00
302_I	305_C	0.785	1.00
293_V	297_L	0.780	1.00
309_P	312_G	0.780	1.00
316_A	319_E	0.778	1.00
310_A	313_C	0.777	1.00
265_E	268_L	0.777	1.00
288_V	292_P	0.776	1.00
290_N	293_V	0.774	1.00
281_V	285_A	0.771	1.00
283_A	288_V	0.769	1.00
279_L	287_V	0.768	1.00
244_R	248_E	0.766	1.00
279_L	282_D	0.764	1.00
103_F	111_N	0.762	1.00
47_I	203_C	0.761	1.00
271_D	276_V	0.758	1.00
290_N	294_H	0.757	1.00
21_E	80_G	0.754	1.00
308_P	311_N	0.752	1.00
17_T	44_K	0.750	1.00
247_A	250_I	0.749	1.00
269_V	273_P	0.748	1.00
294_H	298_R	0.747	1.00
246_S	250_I	0.747	1.00
172_L	204_V	0.745	1.00
322_H	326_L	0.744	1.00
319_E	326_L	0.741	1.00
301_K	305_C	0.741	1.00
321_I	325_Y	0.740	1.00
29_Y	60_T	0.737	1.00
50_L	221_A	0.736	1.00
81_V	169_K	0.736	1.00
286_S	289_D	0.736	1.00
301_K	307_E	0.730	1.00
280_K	284_D	0.721	1.00
18_P	21_E	0.721	1.00
273_P	277_H	0.719	1.00
280_K	285_A	0.718	1.00
50_L	223_M	0.714	1.00
190_L	194_D	0.713	1.00
286_S	293_V	0.712	1.00
283_A	286_S	0.711	1.00
318_G	322_H	0.711	1.00
27_K	35_V	0.707	1.00
115_G	166_K	0.707	1.00
121_L	126_I	0.705	1.00
133_M	161_A	0.702	1.00
313_C	327_G	0.700	1.00
291_V	295_V	0.697	1.00
291_V	294_H	0.696	1.00
108_V	158_V	0.695	1.00
64_M	72_S	0.694	1.00
264_Q	270_L	0.692	1.00
268_L	271_D	0.689	1.00
116_L	120_K	0.688	1.00
276_V	280_K	0.688	1.00
311_N	315_F	0.687	1.00
133_M	136_L	0.684	1.00
227_K	231_I	0.684	1.00
304_L	308_P	0.682	1.00
234_P	238_Y	0.681	1.00
169_K	201_V	0.679	1.00
105_H	146_K	0.675	1.00
44_K	169_K	0.670	1.00
48_F	231_I	0.667	1.00
296_A	299_P	0.666	1.00
254_N	258_G	0.665	1.00
253_V	260_L	0.665	1.00
307_E	310_A	0.662	1.00
281_V	288_V	0.661	1.00
276_V	283_A	0.660	1.00
94_N	203_C	0.659	1.00
44_K	79_D	0.658	1.00
295_V	300_E	0.656	1.00
297_L	304_L	0.651	1.00
297_L	302_I	0.651	1.00
281_V	286_S	0.650	1.00
111_N	114_F	0.650	1.00
319_E	327_G	0.649	1.00
40_L	231_I	0.649	1.00
205_M	213_A	0.649	1.00
222_I	241_P	0.647	1.00
293_V	300_E	0.645	1.00
296_A	300_E	0.643	1.00
287_V	294_H	0.642	1.00
299_P	302_I	0.640	1.00
189_Q	215_T	0.640	1.00
308_P	312_G	0.639	1.00
114_F	117_K	0.638	1.00
47_I	216_M	0.634	1.00
264_Q	268_L	0.632	1.00
315_F	320_V	0.631	1.00
270_L	276_V	0.631	1.00
276_V	279_L	0.629	1.00
311_N	316_A	0.629	1.00
295_V	299_P	0.629	1.00
240_H	243_T	0.627	1.00
271_D	274_G	0.624	1.00
248_E	255_V	0.623	1.00
312_G	317_V	0.622	1.00
275_L	280_K	0.622	1.00
304_L	309_P	0.620	1.00
205_M	216_M	0.620	1.00
17_T	43_Y	0.619	1.00
283_A	297_L	0.615	1.00
271_D	277_H	0.613	1.00
312_G	316_A	0.612	1.00
298_R	304_L	0.611	1.00
266_D	269_V	0.606	1.00
211_E	215_T	0.605	1.00
270_L	277_H	0.602	0.99
220_I	234_P	0.602	0.99
157_R	180_L	0.601	0.99
297_L	301_K	0.601	0.99
289_D	296_A	0.600	0.99
68_F	97_F	0.599	0.99
122_P	126_I	0.598	0.99
109_E	112_I	0.597	0.99
266_D	271_D	0.597	0.99
290_N	299_P	0.594	0.99
217_A	220_I	0.594	0.99
298_R	301_K	0.592	0.99
182_K	189_Q	0.590	0.99
292_P	297_L	0.590	0.99
207_T	212_E	0.589	0.99
288_V	293_V	0.586	0.99
42_I	204_V	0.583	0.99
110_Q	117_K	0.579	0.99
126_I	131_N	0.578	0.99
256_F	260_L	0.578	0.99
290_N	295_V	0.574	0.99
284_D	289_D	0.570	0.99
117_K	123_K	0.568	0.99
104_P	155_R	0.565	0.99
238_Y	242_T	0.565	0.99
28_S	32_Q	0.563	0.99
168_P	171_L	0.563	0.99
317_V	322_H	0.560	0.99
50_L	204_V	0.559	0.99
241_P	244_R	0.557	0.99
318_G	327_G	0.555	0.99
277_H	283_A	0.553	0.99
111_N	116_L	0.553	0.99
77_M	80_G	0.552	0.99
241_P	245_Y	0.551	0.99
257_E	260_L	0.548	0.99
175_E	208_H	0.546	0.99
108_V	114_F	0.546	0.99
300_E	305_C	0.543	0.99
312_G	323_I	0.542	0.99
289_D	292_P	0.541	0.99
272_S	277_H	0.541	0.99
283_A	289_D	0.540	0.99
304_L	310_A	0.539	0.99
223_M	228_F	0.539	0.99
290_N	298_R	0.538	0.99
244_R	247_A	0.537	0.99
279_L	285_A	0.536	0.99
248_E	251_G	0.536	0.99
284_D	290_N	0.535	0.99
267_G	271_D	0.534	0.99
288_V	295_V	0.534	0.99
206_V	209_D	0.533	0.99
269_V	274_G	0.531	0.99
283_A	291_V	0.530	0.99
319_E	325_Y	0.528	0.99
285_A	290_N	0.528	0.99
301_K	306_E	0.527	0.99
297_L	305_C	0.525	0.99
239_E	242_T	0.525	0.99
294_H	297_L	0.525	0.99
277_H	282_D	0.524	0.99
252_S	255_V	0.523	0.99
178_G	189_Q	0.523	0.99
271_D	280_K	0.522	0.99
37_D	73_A	0.521	0.99
314_N	320_V	0.520	0.99
69_E	72_S	0.519	0.98
47_I	205_M	0.518	0.98
152_G	157_R	0.517	0.98
302_I	306_E	0.516	0.98
292_P	306_E	0.516	0.98
19_L	43_Y	0.515	0.98
205_M	212_E	0.515	0.98
263_R	266_D	0.512	0.98
94_N	166_K	0.511	0.98
94_N	98_Q	0.511	0.98
254_N	257_E	0.510	0.98
310_A	314_N	0.509	0.98
273_P	280_K	0.508	0.98
173_L	205_M	0.507	0.98
49_A	216_M	0.506	0.98
293_V	301_K	0.506	0.98
186_D	252_S	0.505	0.98
290_N	302_I	0.504	0.98
110_Q	144_K	0.504	0.98
265_E	269_V	0.503	0.98
180_L	188_M	0.502	0.98
280_K	287_V	0.501	0.98
134_L	139_M	0.501	0.98
102_L	147_P	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2it1A	1	0.9257	100	0.254	Contact Map
1v43A	2	0.9098	100	0.256	Contact Map
3rlfA	2	0.9337	100	0.26	Contact Map
2yyzA	1	0.9231	100	0.26	Contact Map
3d31A	2	0.9204	100	0.261	Contact Map
1oxxK	1	0.9072	100	0.262	Contact Map
1g291	4	0.939	100	0.264	Contact Map
3fvqA	2	0.9151	100	0.272	Contact Map
1z47A	2	0.9125	100	0.273	Contact Map
4ry2A	2	0.6393	100	0.291	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0131 seconds.