YAAJ - ECOLI - GREMLIN Contacts

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YAAJ - Uncharacterized transporter YaaJ

UniProt:	P30143	Sequences: MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11555
Length:	476 (436)
Sequences:	3765 (2325)
Seq/√Len:	111.3

ECOLI - YAAJ
BACSU - YRBD YFLA GLNT ALST

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
92_V	315_A	4.924	1.00
115_L	437_I	4.156	1.00
219_S	313_A	3.599	1.00
133_M	426_A	3.530	1.00
108_A	434_V	3.279	1.00
227_I	230_L	3.260	1.00
312_T	316_M	3.152	1.00
118_E	135_R	3.033	1.00
107_F	438_A	3.027	1.00
137_L	429_L	2.967	1.00
37_F	100_F	2.857	1.00
235_W	239_E	2.746	1.00
234_I	238_F	2.727	1.00
204_M	362_S	2.714	1.00
221_V	225_M	2.679	1.00
31_R	435_H	2.619	1.00
24_A	428_L	2.552	1.00
229_Q	232_H	2.519	1.00
203_L	207_F	2.488	1.00
371_A	389_L	2.442	1.00
150_L	374_N	2.412	1.00
236_S	240_S	2.391	1.00
145_L	149_F	2.373	1.00
186_A	394_F	2.343	1.00
6_S	10_S	2.276	1.00
213_I	217_L	2.255	1.00
173_S	353_T	2.216	1.00
116_Y	433_V	2.204	1.00
26_C	101_I	2.199	1.00
133_M	143_G	2.163	1.00
24_A	424_L	2.158	1.00
7_F	11_V	2.142	1.00
134_A	377_F	2.113	1.00
134_A	140_R	2.093	1.00
199_G	202_R	2.089	1.00
243_G	246_E	2.073	1.00
9_N	414_I	2.060	1.00
31_R	432_P	2.044	1.00
76_N	306_D	2.039	1.00
232_H	235_W	2.037	1.00
5_F	414_I	1.992	1.00
190_L	394_F	1.962	1.00
291_H	440_D	1.951	1.00
233_V	319_L	1.950	1.00
92_V	237_I	1.902	1.00
183_I	187_V	1.878	1.00
42_Q	45_K	1.870	1.00
387_W	390_R	1.865	1.00
304_F	308_L	1.837	1.00
5_F	410_Q	1.821	1.00
27_W	431_S	1.812	1.00
291_H	444_Q	1.810	1.00
188_F	357_I	1.794	1.00
421_I	425_T	1.788	1.00
406_P	410_Q	1.777	1.00
224_V	227_I	1.774	1.00
186_A	398_I	1.770	1.00
41_R	45_K	1.748	1.00
144_V	378_L	1.747	1.00
293_A	437_I	1.741	1.00
120_D	124_Q	1.721	1.00
260_I	264_F	1.702	1.00
233_V	316_M	1.696	1.00
84_I	92_V	1.696	1.00
207_F	358_L	1.696	1.00
179_L	398_I	1.686	1.00
372_E	390_R	1.672	1.00
261_T	265_Q	1.664	1.00
330_L	338_K	1.654	1.00
4_F	8_I	1.653	1.00
29_T	36_Q	1.652	1.00
62_Q	201_A	1.650	1.00
290_P	294_A	1.645	1.00
251_A	254_Y	1.642	1.00
42_Q	441_Y	1.625	1.00
149_F	418_C	1.625	1.00
78_A	332_G	1.601	1.00
235_W	238_F	1.581	1.00
262_N	265_Q	1.575	1.00
230_L	233_V	1.570	1.00
432_P	436_T	1.547	1.00
21_L	268_M	1.538	1.00
33_G	439_S	1.536	1.00
217_L	221_V	1.530	1.00
38_R	442_L	1.530	1.00
190_L	194_T	1.515	1.00
65_C	204_M	1.502	1.00
29_T	34_F	1.487	1.00
146_F	419_M	1.486	1.00
13_W	417_A	1.483	1.00
375_L	379_R	1.482	1.00
282_A	299_Q	1.478	1.00
86_A	262_N	1.476	1.00
437_I	440_D	1.473	1.00
223_C	320_L	1.466	1.00
193_I	368_Y	1.462	1.00
379_R	382_N	1.462	1.00
113_A	283_A	1.435	1.00
103_M	304_F	1.430	1.00
341_R	349_A	1.424	1.00
391_I	395_A	1.419	1.00
42_Q	46_S	1.414	1.00
20_L	428_L	1.413	1.00
134_A	144_V	1.413	1.00
240_S	244_W	1.411	1.00
248_A	251_A	1.409	1.00
72_V	310_I	1.406	1.00
115_L	433_V	1.404	1.00
225_M	343_L	1.403	1.00
219_S	317_L	1.401	1.00
223_C	230_L	1.384	1.00
225_M	228_G	1.373	1.00
177_P	180_V	1.370	1.00
62_Q	205_Q	1.368	1.00
387_W	391_I	1.365	1.00
32_T	35_V	1.360	1.00
74_S	356_V	1.358	1.00
182_G	401_T	1.354	1.00
223_C	316_M	1.354	1.00
96_W	312_T	1.350	1.00
167_A	181_T	1.349	1.00
60_S	289_P	1.344	1.00
180_V	184_I	1.343	1.00
144_V	148_V	1.338	1.00
33_G	442_L	1.336	1.00
146_F	279_P	1.336	1.00
440_D	444_Q	1.335	1.00
31_R	431_S	1.335	1.00
166_V	185_L	1.326	1.00
40_I	44_G	1.325	1.00
384_K	388_C	1.315	1.00
231_P	235_W	1.301	0.99
216_V	220_L	1.293	0.99
236_S	319_L	1.291	0.99
5_F	407_L	1.290	0.99
133_M	142_M	1.289	0.99
161_V	412_A	1.282	0.99
8_I	414_I	1.273	0.99
59_T	62_Q	1.270	0.99
224_V	228_G	1.269	0.99
202_R	205_Q	1.267	0.99
435_H	439_S	1.262	0.99
15_S	19_Y	1.261	0.99
411_L	415_I	1.258	0.99
27_W	31_R	1.257	0.99
275_M	420_A	1.257	0.99
284_A	369_I	1.253	0.99
233_V	320_L	1.251	0.99
77_L	333_I	1.247	0.99
64_L	305_I	1.245	0.99
179_L	183_I	1.243	0.99
177_P	181_T	1.242	0.99
223_C	227_I	1.239	0.99
100_F	308_L	1.230	0.99
188_F	361_F	1.227	0.99
220_L	224_V	1.226	0.99
228_G	231_P	1.216	0.99
140_R	143_G	1.204	0.99
443_R	447_L	1.203	0.99
34_F	37_F	1.194	0.99
249_G	253_G	1.185	0.99
36_Q	104_A	1.179	0.99
106_S	110_C	1.177	0.99
61_F	65_C	1.173	0.99
364_I	397_V	1.170	0.99
321_A	343_L	1.166	0.99
281_A	370_Y	1.162	0.99
176_F	181_T	1.159	0.99
203_L	365_V	1.159	0.99
20_L	421_I	1.158	0.99
163_A	401_T	1.154	0.99
138_G	141_W	1.143	0.99
221_V	344_M	1.140	0.99
27_W	435_H	1.139	0.99
182_G	398_I	1.137	0.99
398_I	402_L	1.136	0.99
8_I	11_V	1.134	0.99
226_N	320_L	1.134	0.99
120_D	126_R	1.132	0.98
110_C	299_Q	1.131	0.98
141_W	145_L	1.131	0.98
202_R	206_G	1.130	0.98
240_S	243_G	1.127	0.98
433_V	436_T	1.126	0.98
119_R	125_F	1.123	0.98
78_A	165_A	1.122	0.98
40_I	304_F	1.119	0.98
151_L	154_Y	1.113	0.98
136_G	430_L	1.113	0.98
189_T	361_F	1.112	0.98
151_L	375_L	1.103	0.98
321_A	339_A	1.100	0.98
250_G	254_Y	1.100	0.98
239_E	245_Q	1.098	0.98
132_Y	426_A	1.097	0.98
301_I	305_I	1.095	0.98
236_S	239_E	1.093	0.98
111_S	296_G	1.092	0.98
318_I	336_I	1.083	0.98
314_S	336_I	1.083	0.98
39_Y	442_L	1.071	0.98
379_R	385_A	1.062	0.98
28_F	108_A	1.061	0.98
137_L	141_W	1.053	0.98
216_V	313_A	1.050	0.98
318_I	335_L	1.049	0.98
39_Y	297_I	1.048	0.98
111_S	293_A	1.045	0.97
98_A	264_F	1.044	0.97
103_M	308_L	1.038	0.97
230_L	234_I	1.033	0.97
70_A	366_A	1.033	0.97
7_F	10_S	1.030	0.97
344_M	347_W	1.030	0.97
158_F	367_N	1.023	0.97
222_I	343_L	1.021	0.97
351_F	355_V	1.019	0.97
350_E	354_L	1.014	0.97
81_A	336_I	1.013	0.97
107_F	293_A	1.012	0.97
338_K	342_V	1.007	0.97
85_T	335_L	1.007	0.97
107_F	111_S	1.007	0.97
47_L	298_V	1.006	0.97
180_V	183_I	1.004	0.97
227_I	231_P	0.998	0.97
315_A	319_L	0.997	0.97
341_R	345_G	0.996	0.97
195_R	199_G	0.996	0.97
226_N	229_Q	0.995	0.97
207_F	362_S	0.993	0.97
66_T	197_L	0.993	0.97
334_Q	338_K	0.991	0.96
171_S	178_P	0.984	0.96
164_N	409_W	0.978	0.96
81_A	318_I	0.974	0.96
118_E	134_A	0.974	0.96
375_L	385_A	0.974	0.96
323_N	338_K	0.974	0.96
338_K	341_R	0.973	0.96
62_Q	202_R	0.970	0.96
420_A	424_L	0.969	0.96
96_W	234_I	0.969	0.96
80_V	311_C	0.969	0.96
60_S	298_V	0.963	0.96
19_Y	23_G	0.962	0.96
43_F	301_I	0.960	0.96
246_E	249_G	0.958	0.96
84_I	318_I	0.958	0.96
43_F	300_M	0.956	0.96
22_F	98_A	0.955	0.96
187_V	191_L	0.955	0.96
210_L	214_I	0.954	0.96
247_A	250_G	0.954	0.96
222_I	340_M	0.953	0.96
126_R	373_N	0.951	0.96
272_E	277_S	0.950	0.96
395_A	399_G	0.950	0.96
248_A	252_A	0.948	0.95
22_F	268_M	0.945	0.95
198_H	202_R	0.936	0.95
439_S	443_R	0.933	0.95
4_F	7_F	0.933	0.95
140_R	144_V	0.931	0.95
382_N	385_A	0.925	0.95
168_R	334_Q	0.923	0.95
270_S	306_D	0.922	0.95
129_P	279_P	0.917	0.95
142_M	426_A	0.914	0.95
150_L	419_M	0.913	0.94
310_I	313_A	0.910	0.94
399_G	403_L	0.908	0.94
165_A	356_V	0.908	0.94
438_A	442_L	0.907	0.94
154_Y	277_S	0.907	0.94
273_A	303_I	0.907	0.94
133_M	141_W	0.905	0.94
232_H	236_S	0.905	0.94
433_V	437_I	0.904	0.94
444_Q	448_G	0.902	0.94
110_C	302_G	0.901	0.94
410_Q	414_I	0.896	0.94
42_Q	445_R	0.894	0.94
152_I	415_I	0.892	0.94
103_M	300_M	0.892	0.94
223_C	233_V	0.890	0.94
245_Q	251_A	0.887	0.94
84_I	319_L	0.886	0.94
221_V	224_V	0.885	0.94
32_T	435_H	0.884	0.93
125_F	286_A	0.883	0.93
158_F	275_M	0.883	0.93
39_Y	42_Q	0.879	0.93
189_T	364_I	0.878	0.93
86_A	252_A	0.877	0.93
386_I	390_R	0.877	0.93
247_A	251_A	0.874	0.93
320_L	343_L	0.870	0.93
89_P	236_S	0.869	0.93
20_L	24_A	0.868	0.93
279_P	283_A	0.866	0.93
392_C	395_A	0.866	0.93
290_P	441_Y	0.865	0.93
429_L	432_P	0.865	0.93
44_G	301_I	0.863	0.93
214_I	355_V	0.858	0.92
229_Q	320_L	0.856	0.92
17_M	417_A	0.855	0.92
192_A	203_L	0.853	0.92
428_L	431_S	0.852	0.92
57_G	286_A	0.851	0.92
84_I	315_A	0.850	0.92
18_I	22_F	0.850	0.92
328_M	331_E	0.849	0.92
68_L	72_V	0.847	0.92
78_A	81_A	0.845	0.92
46_S	298_V	0.841	0.92
71_R	106_S	0.840	0.92
12_L	16_V	0.837	0.91
93_F	97_V	0.837	0.91
31_R	34_F	0.837	0.91
114_Q	117_K	0.836	0.91
304_F	309_V	0.831	0.91
58_L	201_A	0.831	0.91
77_L	352_V	0.830	0.91
431_S	435_H	0.828	0.91
348_G	352_V	0.827	0.91
25_G	102_G	0.827	0.91
35_V	438_A	0.826	0.91
169_A	337_Q	0.824	0.91
218_T	355_V	0.824	0.91
93_F	242_F	0.822	0.91
299_Q	302_G	0.821	0.91
234_I	316_M	0.819	0.91
108_A	435_H	0.819	0.91
172_F	334_Q	0.817	0.90
82_L	262_N	0.815	0.90
182_G	402_L	0.815	0.90
200_V	369_I	0.814	0.90
170_L	357_I	0.814	0.90
129_P	132_Y	0.809	0.90
313_A	317_L	0.809	0.90
236_S	324_G	0.809	0.90
208_V	211_M	0.809	0.90
174_F	350_E	0.807	0.90
28_F	427_I	0.804	0.90
168_R	171_S	0.804	0.90
29_T	37_F	0.802	0.90
163_A	364_I	0.801	0.90
160_G	403_L	0.800	0.90
228_G	232_H	0.799	0.89
127_G	283_A	0.798	0.89
108_A	111_S	0.797	0.89
165_A	333_I	0.793	0.89
154_Y	389_L	0.792	0.89
189_T	397_V	0.791	0.89
43_F	297_I	0.789	0.89
118_E	126_R	0.787	0.89
308_L	312_T	0.784	0.89
346_S	349_A	0.779	0.88
84_I	324_G	0.779	0.88
85_T	331_E	0.777	0.88
434_V	438_A	0.773	0.88
142_M	145_L	0.773	0.88
23_G	428_L	0.772	0.88
149_F	422_T	0.772	0.88
158_F	416_M	0.772	0.88
282_A	302_G	0.772	0.88
298_V	302_G	0.769	0.88
76_N	270_S	0.769	0.88
64_L	298_V	0.768	0.88
289_P	294_A	0.768	0.88
170_L	181_T	0.767	0.87
294_A	441_Y	0.766	0.87
270_S	307_T	0.759	0.87
222_I	317_L	0.756	0.87
396_T	399_G	0.754	0.87
432_P	439_S	0.753	0.87
106_S	278_T	0.753	0.87
171_S	181_T	0.753	0.87
6_S	410_Q	0.749	0.86
237_I	315_A	0.743	0.86
240_S	259_A	0.742	0.86
32_T	438_A	0.742	0.86
208_V	212_A	0.741	0.86
47_L	301_I	0.741	0.86
197_L	369_I	0.732	0.85
65_C	205_Q	0.732	0.85
218_T	344_M	0.730	0.85
350_E	353_T	0.728	0.85
4_F	11_V	0.727	0.85
244_W	247_A	0.727	0.85
25_G	101_I	0.725	0.84
159_S	412_A	0.723	0.84
206_G	210_L	0.723	0.84
373_N	376_F	0.720	0.84
385_A	388_C	0.717	0.84
72_V	212_A	0.717	0.84
71_R	299_Q	0.717	0.84
238_F	319_L	0.715	0.84
244_W	254_Y	0.715	0.84
35_V	39_Y	0.714	0.83
46_S	441_Y	0.712	0.83
120_D	373_N	0.712	0.83
179_L	402_L	0.712	0.83
16_V	19_Y	0.712	0.83
69_A	303_I	0.710	0.83
141_W	144_V	0.707	0.83
161_V	409_W	0.702	0.82
77_L	359_F	0.701	0.82
168_R	172_F	0.701	0.82
234_I	312_T	0.700	0.82
285_A	289_P	0.698	0.82
174_F	181_T	0.695	0.82
102_G	105_T	0.694	0.82
218_T	351_F	0.693	0.82
154_Y	367_N	0.692	0.82
66_T	366_A	0.690	0.81
110_C	282_A	0.689	0.81
240_S	245_Q	0.688	0.81
230_L	316_M	0.687	0.81
158_F	412_A	0.685	0.81
248_A	254_Y	0.683	0.81
11_V	15_S	0.681	0.81
70_A	367_N	0.680	0.80
333_I	356_V	0.680	0.80
237_I	319_L	0.679	0.80
18_I	268_M	0.679	0.80
37_F	41_R	0.678	0.80
331_E	334_Q	0.676	0.80
144_V	147_A	0.674	0.80
197_L	200_V	0.673	0.80
341_R	346_S	0.673	0.80
82_L	85_T	0.672	0.80
12_L	420_A	0.670	0.79
169_A	333_I	0.670	0.79
445_R	448_G	0.670	0.79
226_N	343_L	0.668	0.79
56_G	286_A	0.668	0.79
270_S	308_L	0.668	0.79
212_A	310_I	0.667	0.79
158_F	420_A	0.667	0.79
432_P	435_H	0.666	0.79
243_G	251_A	0.664	0.79
347_W	350_E	0.661	0.79
188_F	191_L	0.661	0.79
108_A	438_A	0.661	0.79
352_V	355_V	0.660	0.78
130_A	374_N	0.658	0.78
211_M	270_S	0.658	0.78
432_P	437_I	0.657	0.78
384_K	387_W	0.654	0.78
24_A	28_F	0.652	0.78
17_M	420_A	0.652	0.78
154_Y	158_F	0.652	0.78
92_V	96_W	0.650	0.77
32_T	108_A	0.650	0.77
353_T	357_I	0.649	0.77
225_M	229_Q	0.648	0.77
113_A	279_P	0.648	0.77
367_N	416_M	0.647	0.77
244_W	248_A	0.647	0.77
12_L	421_I	0.646	0.77
216_V	219_S	0.646	0.77
159_S	367_N	0.644	0.77
382_N	388_C	0.643	0.77
229_Q	233_V	0.643	0.77
277_S	367_N	0.643	0.77
34_F	100_F	0.642	0.76
194_T	387_W	0.642	0.76
57_G	125_F	0.641	0.76
439_S	442_L	0.641	0.76
64_L	302_G	0.641	0.76
111_S	434_V	0.640	0.76
337_Q	341_R	0.640	0.76
74_S	360_A	0.638	0.76
160_G	163_A	0.638	0.76
47_L	305_I	0.637	0.76
186_A	190_L	0.637	0.76
214_I	354_L	0.637	0.76
115_L	436_T	0.637	0.76
28_F	434_V	0.635	0.76
305_I	309_V	0.635	0.76
239_E	244_W	0.634	0.76
259_A	262_N	0.633	0.75
220_L	223_C	0.631	0.75
403_L	408_M	0.630	0.75
317_L	340_M	0.629	0.75
28_F	431_S	0.629	0.75
70_A	275_M	0.627	0.75
33_G	41_R	0.626	0.75
322_G	325_T	0.622	0.74
159_S	393_T	0.622	0.74
275_M	416_M	0.621	0.74
46_S	294_A	0.620	0.74
316_M	320_L	0.619	0.74
215_W	219_S	0.617	0.74
107_F	434_V	0.616	0.74
156_I	392_C	0.615	0.73
40_I	103_M	0.615	0.73
388_C	391_I	0.614	0.73
78_A	331_E	0.613	0.73
72_V	305_I	0.612	0.73
55_P	119_R	0.610	0.73
98_A	268_M	0.610	0.73
178_P	181_T	0.606	0.72
247_A	259_A	0.606	0.72
239_E	243_G	0.604	0.72
293_A	434_V	0.603	0.72
60_S	285_A	0.603	0.72
35_V	104_A	0.602	0.72
291_H	441_Y	0.601	0.72
429_L	433_V	0.601	0.72
247_A	254_Y	0.600	0.72
153_A	416_M	0.598	0.71
15_S	18_I	0.597	0.71
5_F	9_N	0.597	0.71
82_L	405_L	0.596	0.71
106_S	117_K	0.594	0.71
97_V	238_F	0.589	0.70
282_A	295_Q	0.589	0.70
389_L	393_T	0.588	0.70
171_S	175_D	0.588	0.70
111_S	438_A	0.585	0.70
166_V	364_I	0.585	0.70
20_L	425_T	0.585	0.70
227_I	232_H	0.582	0.69
133_M	139_M	0.582	0.69
133_M	138_G	0.580	0.69
147_A	378_L	0.580	0.69
17_M	421_I	0.579	0.69
182_G	186_A	0.577	0.69
74_S	166_V	0.577	0.69
126_R	376_F	0.575	0.68
99_A	102_G	0.575	0.68
324_G	339_A	0.573	0.68
99_A	307_T	0.571	0.68
111_S	437_I	0.571	0.68
251_A	324_G	0.571	0.68
254_Y	261_T	0.570	0.68
254_Y	260_I	0.568	0.67
74_S	165_A	0.568	0.67
197_L	201_A	0.568	0.67
43_F	298_V	0.567	0.67
71_R	282_A	0.567	0.67
425_T	429_L	0.566	0.67
129_P	280_N	0.564	0.67
395_A	398_I	0.563	0.67
121_V	383_P	0.563	0.67
132_Y	423_N	0.563	0.67
160_G	408_M	0.562	0.67
113_A	278_T	0.561	0.66
336_I	339_A	0.560	0.66
95_M	307_T	0.560	0.66
214_I	218_T	0.560	0.66
98_A	348_G	0.559	0.66
170_L	174_F	0.559	0.66
166_V	360_A	0.559	0.66
76_N	91_A	0.559	0.66
159_S	389_L	0.557	0.66
40_I	309_V	0.557	0.66
181_T	184_I	0.557	0.66
122_N	383_P	0.557	0.66
245_Q	248_A	0.555	0.66
161_V	408_M	0.555	0.66
244_W	259_A	0.554	0.66
189_T	193_I	0.553	0.65
183_I	398_I	0.553	0.65
106_S	302_G	0.551	0.65
130_A	280_N	0.549	0.65
176_F	180_V	0.548	0.65
33_G	432_P	0.547	0.65
105_T	278_T	0.547	0.65
295_Q	303_I	0.546	0.64
364_I	393_T	0.545	0.64
39_Y	446_K	0.545	0.64
92_V	312_T	0.545	0.64
105_T	271_N	0.545	0.64
399_G	402_L	0.544	0.64
269_F	412_A	0.544	0.64
60_S	295_Q	0.543	0.64
181_T	185_L	0.543	0.64
136_G	139_M	0.542	0.64
70_A	363_S	0.542	0.64
96_W	238_F	0.541	0.64
192_A	361_F	0.541	0.64
375_L	388_C	0.541	0.64
234_I	237_I	0.540	0.64
278_T	370_Y	0.540	0.64
35_V	107_F	0.540	0.64
251_A	259_A	0.539	0.63
323_N	335_L	0.539	0.63
98_A	254_Y	0.539	0.63
283_A	390_R	0.538	0.63
271_N	307_T	0.538	0.63
80_V	270_S	0.537	0.63
441_Y	445_R	0.536	0.63
108_A	431_S	0.536	0.63
43_F	47_L	0.534	0.63
58_L	66_T	0.534	0.63
77_L	336_I	0.533	0.63
193_I	390_R	0.533	0.63
12_L	414_I	0.532	0.62
216_V	309_V	0.532	0.62
168_R	332_G	0.532	0.62
269_F	318_I	0.530	0.62
264_F	268_M	0.529	0.62
110_C	132_Y	0.527	0.62
394_F	397_V	0.527	0.62
143_G	149_F	0.524	0.61
167_A	401_T	0.524	0.61
443_R	446_K	0.523	0.61
142_M	429_L	0.520	0.61
166_V	357_I	0.520	0.61
160_G	164_N	0.520	0.61
58_L	284_A	0.519	0.61
35_V	297_I	0.519	0.61
272_E	279_P	0.518	0.60
218_T	357_I	0.517	0.60
356_V	360_A	0.516	0.60
168_R	178_P	0.516	0.60
222_I	321_A	0.516	0.60
261_T	414_I	0.515	0.60
321_A	324_G	0.514	0.60
173_S	349_A	0.513	0.60
231_P	234_I	0.512	0.59
86_A	261_T	0.512	0.59
71_R	278_T	0.512	0.59
64_L	68_L	0.511	0.59
144_V	377_F	0.510	0.59
82_L	409_W	0.510	0.59
145_L	148_V	0.510	0.59
96_W	308_L	0.510	0.59
108_A	427_I	0.509	0.59
12_L	412_A	0.508	0.59
160_G	396_T	0.508	0.59
436_T	440_D	0.507	0.59
54_Q	286_A	0.507	0.59
152_I	157_I	0.507	0.59
71_R	110_C	0.507	0.59
38_R	41_R	0.507	0.59
78_A	356_V	0.505	0.58
35_V	40_I	0.504	0.58
199_G	289_P	0.503	0.58
383_P	387_W	0.503	0.58
212_A	364_I	0.503	0.58
238_F	320_L	0.503	0.58
160_G	405_L	0.503	0.58
184_I	187_V	0.502	0.58
243_G	247_A	0.502	0.58
45_K	48_K	0.502	0.58
416_M	420_A	0.501	0.58
133_M	422_T	0.500	0.58
109_E	423_N	0.500	0.58

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.7773	99.9	0.859	Contact Map
3giaA	1	0.8025	99.8	0.872	Contact Map
4djkA	2	0.7353	99.7	0.89	Contact Map
4wgvA	2	0.75	98.1	0.943	Contact Map
2xq2A	2	0.8571	98	0.945	Contact Map
3dh4A	3	0.8151	97.8	0.947	Contact Map
4us3A	1	0.7899	97.1	0.954	Contact Map
4xp4A	1	0.7983	96.4	0.958	Contact Map
2jlnA	1	0.7941	96	0.959	Contact Map
2a65A	2	0.8025	95.9	0.959	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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