GREMLIN Database
FIMD - Outer membrane usher protein FimD
UniProt: P30130 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10311
Length: 878 (780)
Sequences: 2644 (1991)
Seq/√Len: 71.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
108_C135_C5.2001.00
265_D279_R4.6391.00
681_N696_G4.5971.00
719_V750_A4.3341.00
813_A845_V4.2811.00
191_F209_L4.2521.00
309_A350_E4.2421.00
711_G746_V4.1831.00
345_Q357_I4.1261.00
374_T400_L4.0781.00
798_L837_M4.0531.00
301_I313_I4.0271.00
374_T402_H4.0161.00
541_S566_L3.9771.00
278_F395_F3.9231.00
683_G694_Y3.9171.00
349_K355_T3.6141.00
722_K789_E3.5621.00
347_T355_T3.4161.00
310_Q349_K3.3921.00
701_V710_L3.3681.00
703_A708_V3.3421.00
219_A252_R3.2911.00
306_R354_S3.2121.00
841_G859_Y3.1781.00
815_V832_V3.1571.00
77_T93_D3.1151.00
314_K319_D2.9991.00
80_V149_L2.9931.00
544_Y565_G2.9691.00
815_V843_V2.9551.00
378_I398_S2.8891.00
650_S670_T2.8421.00
83_Y155_R2.8341.00
802_L857_A2.8321.00
718_V785_I2.7951.00
652_Q668_Y2.7911.00
348_I356_Q2.7911.00
568_T575_W2.7661.00
222_L248_T2.7511.00
621_Y633_N2.7361.00
214_G223_R2.7311.00
191_F207_A2.6701.00
680_A697_V2.6651.00
222_L250_L2.6371.00
440_D460_R2.6271.00
306_R356_Q2.5971.00
567_N576_T2.5861.00
80_V96_F2.5611.00
312_T319_D2.5521.00
815_V845_V2.5421.00
842_K856_V2.5371.00
802_L845_V2.5011.00
709_T740_D2.4981.00
226_T243_W2.4951.00
182_I720_L2.4801.00
148_H157_N2.4751.00
678_G697_V2.4741.00
701_V708_V2.4461.00
184_A785_I2.4391.00
183_N215_L2.4181.00
722_K787_R2.4141.00
857_A875_A2.4071.00
704_H709_T2.3901.00
147_A158_L2.3881.00
254_I257_L2.3841.00
193_G207_A2.3701.00
266_G278_F2.3651.00
446_S492_T2.3071.00
77_T95_T2.3051.00
150_D153_Q2.3001.00
302_H331_T2.2931.00
314_K345_Q2.2641.00
549_H560_E2.2531.00
671_L682_I2.2511.00
804_H809_L2.2421.00
138_L145_A2.2411.00
262_T284_A2.2401.00
48_Y51_P2.2301.00
215_L222_L2.2221.00
79_R93_D2.2141.00
545_L564_A2.1871.00
723_A726_A2.1781.00
195_S205_H2.1641.00
96_F107_P2.1601.00
719_V758_V2.1501.00
312_T349_K2.1401.00
756_N780_P2.1281.00
185_G215_L2.1281.00
817_S821_Q2.1271.00
842_K858_N2.1221.00
137_P140_T2.1041.00
120_N123_S2.0681.00
700_G711_G2.0681.00
142_V145_A2.0561.00
581_L592_Q2.0391.00
422_A442_T2.0361.00
705_A787_R2.0271.00
314_K347_T2.0101.00
287_D375_R2.0071.00
311_V348_I1.9921.00
172_Y175_P1.9771.00
187_L213_S1.9701.00
623_M631_M1.9671.00
700_G714_L1.9631.00
82_I94_V1.9611.00
843_V857_A1.9451.00
720_L744_Y1.9001.00
578_S595_A1.8971.00
189_Y699_G1.8691.00
262_T266_G1.8671.00
443_Q457_Q1.8531.00
706_N787_R1.8521.00
654_G666_T1.8501.00
278_F379_T1.8481.00
704_H744_Y1.8401.00
621_Y635_A1.8321.00
83_Y157_N1.8271.00
305_A325_V1.8171.00
411_Y440_D1.8121.00
802_L832_V1.7981.00
221_R781_T1.7951.00
415_Q489_F1.7921.00
796_I839_L1.7911.00
675_G680_A1.7891.00
620_S636_G1.7861.00
251_E260_R1.7811.00
273_F413_G1.7781.00
755_E777_N1.7681.00
642_L646_N1.7601.00
150_D157_N1.7511.00
73_L105_I1.7391.00
540_T566_L1.7301.00
706_N722_K1.7301.00
279_R384_R1.7271.00
716_D782_R1.7221.00
439_V461_F1.7191.00
809_L845_V1.7141.00
714_L718_V1.7121.00
570_F575_W1.7101.00
224_D245_H1.7091.00
253_D753_Y1.7091.00
768_N796_I1.7081.00
641_L649_Y1.6931.00
83_Y88_Y1.6921.00
723_A792_A1.6901.00
228_W241_N1.6861.00
404_L410_I1.6551.00
345_Q359_T1.6531.00
382_E394_R1.6460.99
113_Q117_M1.6400.99
577_L596_L1.6320.99
313_I332_I1.6320.99
804_H807_K1.6320.99
458_S482_S1.6280.99
803_T874_S1.6270.99
651_V669_A1.6240.99
84_L165_M1.6210.99
278_F282_Q1.6200.99
445_N453_Q1.6190.99
263_L281_A1.6100.99
813_A847_W1.6080.99
259_S376_Y1.6070.99
408_W429_K1.6070.99
266_G379_T1.6010.99
346_V358_F1.5990.99
73_L151_V1.5950.99
803_T808_P1.5910.99
180_P255_I1.5880.99
252_R261_L1.5790.99
573_I598_V1.5780.99
802_L809_L1.5740.99
458_S480_R1.5710.99
403_G409_T1.5700.99
254_I283_L1.5690.99
848_G853_A1.5660.99
292_D754_R1.5630.99
288_N782_R1.5600.99
582_T593_M1.5580.99
348_I358_F1.5580.99
110_T113_Q1.5560.99
737_V745_A1.5490.99
81_D91_T1.5440.99
840_A860_Q1.5430.99
435_G463_Y1.5360.99
347_T357_I1.5310.99
287_D373_H1.5250.99
224_D248_T1.5190.99
700_G718_V1.5110.99
625_H630_R1.5100.99
576_T597_N1.5060.99
253_D260_R1.5010.99
346_V360_V1.4990.99
111_R115_A1.4910.99
411_Y426_G1.4890.99
421_R445_N1.4870.99
731_V747_L1.4860.99
377_S399_T1.4830.99
669_A684_Y1.4820.99
186_L718_V1.4780.99
312_T322_N1.4740.99
686_H691_K1.4680.99
301_I344_L1.4630.99
185_G703_A1.4600.99
272_I424_N1.4540.99
343_D359_T1.4520.99
729_A739_T1.4500.99
182_I787_R1.4460.99
800_M873_L1.4370.99
772_D791_K1.4340.99
310_Q322_N1.4330.99
801_T874_S1.4270.99
647_L673_Y1.4190.98
655_Y665_S1.4170.98
579_Y594_L1.4160.98
382_E392_K1.4140.98
94_V107_P1.4040.98
360_V368_L1.4010.98
186_L785_I1.4000.98
282_Q377_S1.3940.98
445_N455_D1.3860.98
371_E406_A1.3750.98
675_G678_G1.3690.98
253_D781_T1.3680.98
679_N698_S1.3660.98
213_S224_D1.3610.98
575_W596_L1.3580.98
274_D488_N1.3570.98
190_N698_S1.3510.98
844_Q856_V1.3410.98
283_L378_I1.3380.98
801_T831_Q1.3330.98
120_N166_S1.3270.98
528_K550_Q1.3250.98
802_L826_V1.3230.98
286_D782_R1.3030.97
730_K764_T1.3020.97
470_S535_Q1.3010.97
183_N217_I1.2990.97
636_G650_S1.2950.97
815_V834_L1.2900.97
332_I335_I1.2900.97
220_W252_R1.2880.97
159_T326_P1.2860.97
94_V156_L1.2860.97
626_D630_R1.2810.97
408_W427_I1.2670.97
722_K744_Y1.2640.97
167_N333_N1.2610.97
780_P786_V1.2590.97
572_D604_H1.2570.97
96_F105_I1.2560.97
844_Q854_H1.2540.97
869_L873_L1.2500.97
160_I165_M1.2420.96
225_N247_N1.2410.96
313_I323_S1.2380.96
159_T327_P1.2370.96
541_S568_T1.2360.96
475_Q530_Q1.2350.96
798_L861_L1.2290.96
458_S553_W1.2240.96
800_M857_A1.2240.96
702_L718_V1.2220.96
149_L156_L1.2220.96
149_L154_Q1.2130.96
870_L873_L1.2130.96
197_Q691_K1.2120.96
308_T350_E1.2020.96
265_D384_R1.1940.96
193_G695_Y1.1920.95
702_L720_L1.1870.95
531_L545_L1.1790.95
165_M326_P1.1780.95
335_I338_A1.1760.95
800_M834_L1.1760.95
800_M832_V1.1680.95
343_D361_P1.1660.95
115_A166_S1.1640.95
183_N785_I1.1640.95
183_N705_A1.1590.95
254_I261_L1.1540.95
781_T784_A1.1480.94
457_Q483_T1.1440.94
380_A394_R1.1430.94
709_T742_R1.1380.94
186_L214_G1.1340.94
850_E853_A1.1230.94
625_H631_M1.1200.94
546_S563_Q1.1170.94
312_T347_T1.1160.94
403_G435_G1.1150.94
383_Y493_T1.1130.93
180_P219_A1.1100.93
300_V331_T1.1090.93
739_T743_G1.1080.93
526_R553_W1.1030.93
309_A352_D1.0930.93
810_P847_W1.0930.93
450_D454_H1.0900.93
845_V857_A1.0890.93
177_L755_E1.0880.93
75_P98_T1.0860.93
723_A729_A1.0850.93
838_P841_G1.0850.93
86_N157_N1.0810.92
814_M822_S1.0790.92
276_I415_Q1.0790.92
636_G668_Y1.0770.92
81_D88_Y1.0760.92
170_R336_Y1.0680.92
142_V164_F1.0670.92
739_T797_K1.0660.92
267_Y277_N1.0630.92
634_L650_S1.0610.92
709_T720_L1.0570.92
702_L785_I1.0560.92
727_K741_W1.0540.91
188_N212_Q1.0460.91
84_L89_M1.0450.91
670_T683_G1.0440.91
491_D494_Y1.0410.91
841_G861_L1.0410.91
310_Q324_T1.0400.91
674_R679_N1.0350.91
653_T667_G1.0340.91
282_Q379_T1.0340.91
472_T481_Y1.0320.91
527_G551_T1.0280.90
298_A370_R1.0260.90
182_I785_I1.0220.90
757_R775_V1.0210.90
92_R116_S1.0190.90
721_V731_V1.0160.90
647_L671_L1.0150.90
778_V786_V1.0110.90
805_N808_P1.0100.90
704_H707_G1.0090.90
369_Q400_L1.0050.89
579_Y592_Q1.0030.89
534_T544_Y1.0020.89
216_N223_R1.0010.89
317_G345_Q1.0010.89
617_A637_V1.0000.89
313_I321_Y0.9980.89
672_N679_N0.9950.89
802_L875_A0.9940.89
728_D738_R0.9930.89
220_W250_L0.9930.89
709_T744_Y0.9900.89
396_F416_L0.9890.89
537_L540_T0.9880.89
573_I600_I0.9870.89
570_F636_G0.9840.88
847_W854_H0.9840.88
761_D764_T0.9820.88
279_R382_E0.9810.88
712_Q736_G0.9800.88
700_G746_V0.9780.88
418_D628_N0.9750.88
258_R290_L0.9750.88
114_L119_L0.9730.88
667_G686_H0.9730.88
212_Q225_N0.9700.88
112_A116_S0.9690.88
82_I92_R0.9650.87
441_M459_V0.9630.87
65_S68_E0.9610.87
81_D155_R0.9580.87
335_I370_R0.9570.87
776_A788_A0.9540.87
99_G104_G0.9530.87
543_L566_L0.9500.87
619_A635_A0.9490.87
412_G424_N0.9460.86
674_R712_Q0.9460.86
366_P395_F0.9430.86
145_A160_I0.9410.86
295_R754_R0.9400.86
291_P403_G0.9370.86
221_R783_G0.9360.86
580_S593_M0.9320.86
46_D69_N0.9310.85
307_G354_S0.9310.85
221_R784_A0.9280.85
266_G282_Q0.9260.85
636_G652_Q0.9260.85
171_G293_S0.9230.85
218_G252_R0.9190.85
284_A377_S0.9190.85
261_L437_L0.9180.85
796_I871_T0.9170.85
772_D793_R0.9150.84
182_I705_A0.9140.84
409_T435_G0.9140.84
64_L68_E0.9120.84
700_G703_A0.9090.84
231_N239_S0.9060.84
224_D243_W0.9050.84
246_I384_R0.9050.84
702_L746_V0.9000.83
404_L427_I0.8990.83
431_M437_L0.8980.83
163_A331_T0.8960.83
644_D647_L0.8920.83
138_L142_V0.8910.83
219_A781_T0.8910.83
740_D743_G0.8900.83
186_L700_G0.8900.83
363_S368_L0.8890.83
487_F495_S0.8890.83
51_P55_A0.8880.83
285_S376_Y0.8880.83
145_A618_S0.8870.83
311_V325_V0.8870.83
586_W589_G0.8850.82
769_V794_V0.8850.82
523_Y555_T0.8840.82
622_S634_L0.8810.82
146_T159_T0.8810.82
371_E405_P0.8800.82
82_I348_I0.8790.82
342_G403_G0.8790.82
303_G330_F0.8780.82
365_V375_R0.8770.82
418_D485_G0.8740.82
369_Q374_T0.8740.82
732_E759_A0.8740.82
454_H487_F0.8730.82
181_G707_G0.8710.81
44_S47_L0.8710.81
380_A396_F0.8700.81
454_H485_G0.8690.81
50_N53_F0.8690.81
810_P813_A0.8670.81
712_Q737_V0.8640.81
773_N776_A0.8640.81
798_L836_G0.8610.81
666_T691_K0.8600.81
419_R447_T0.8590.81
330_F350_E0.8580.80
466_S471_G0.8570.80
750_A754_R0.8560.80
308_T327_P0.8560.80
131_A134_A0.8540.80
245_H265_D0.8520.80
395_F489_F0.8510.80
369_Q373_H0.8510.80
306_R350_E0.8500.80
348_I360_V0.8500.80
623_M633_N0.8460.80
874_S877_C0.8410.79
378_I400_L0.8400.79
230_Y241_N0.8390.79
721_V747_L0.8370.79
726_A792_A0.8360.79
410_I859_Y0.8350.79
719_V786_V0.8340.79
720_L787_R0.8330.78
86_N677_Y0.8290.78
261_L283_L0.8270.78
619_A637_V0.8260.78
706_N710_L0.8260.78
684_Y691_K0.8260.78
179_D182_I0.8230.78
295_R336_Y0.8230.78
826_V832_V0.8220.78
563_Q631_M0.8210.77
259_S283_L0.8190.77
730_K761_D0.8190.77
486_Y665_S0.8190.77
795_G836_G0.8170.77
600_I629_G0.8160.77
268_T755_E0.8160.77
805_N809_L0.8160.77
395_F415_Q0.8150.77
716_D752_E0.8150.77
42_L45_A0.8140.77
379_T399_T0.8100.77
827_A831_Q0.8090.76
577_L594_L0.8090.76
458_S483_T0.8080.76
602_F605_W0.8080.76
89_M117_M0.8070.76
99_G106_V0.8070.76
489_F493_T0.8060.76
430_N436_A0.8060.76
447_T453_Q0.8060.76
816_T846_K0.8060.76
796_I862_P0.8040.76
311_V598_V0.8030.76
72_E105_I0.8030.76
250_L263_L0.8020.76
107_P156_L0.8020.76
474_I603_S0.8020.76
475_Q479_Y0.8010.76
303_G699_G0.8010.76
472_T533_V0.8000.76
488_N491_D0.7990.76
249_W783_G0.7980.75
268_T278_F0.7980.75
796_I861_L0.7980.75
287_D295_R0.7970.75
438_S462_L0.7960.75
43_S47_L0.7960.75
94_V313_I0.7950.75
730_K738_R0.7950.75
477_V531_L0.7950.75
563_Q580_S0.7930.75
263_L266_G0.7920.75
837_M841_G0.7910.75
458_S479_Y0.7900.75
369_Q401_L0.7890.75
58_P72_E0.7870.74
85_N743_G0.7870.74
194_N692_Q0.7860.74
47_L52_R0.7850.74
285_S290_L0.7840.74
51_P68_E0.7840.74
425_F439_V0.7830.74
46_D68_E0.7820.74
188_N718_V0.7820.74
567_N590_R0.7800.74
840_A858_N0.7800.74
841_G860_Q0.7780.74
299_P303_G0.7780.74
193_G205_H0.7770.73
323_S332_I0.7770.73
800_M875_A0.7750.73
709_T746_V0.7720.73
369_Q403_G0.7710.73
339_G524_N0.7680.73
367_L428_G0.7680.73
472_T535_Q0.7680.73
726_A769_V0.7670.73
721_V733_N0.7660.72
581_L590_R0.7640.72
797_K835_S0.7640.72
550_Q559_D0.7630.72
678_G712_Q0.7600.72
766_A769_V0.7590.72
762_T774_A0.7590.72
619_A636_G0.7570.72
368_L403_G0.7570.72
532_T546_S0.7560.71
737_V748_P0.7550.71
642_L647_L0.7540.71
165_M281_A0.7530.71
296_G338_A0.7500.71
108_C368_L0.7500.71
313_I344_L0.7490.71
180_P781_T0.7480.71
678_G711_G0.7470.71
458_S836_G0.7470.71
180_P253_D0.7460.70
873_L877_C0.7450.70
303_G342_G0.7450.70
635_A638_Y0.7450.70
648_S672_N0.7430.70
839_L843_V0.7410.70
90_A720_L0.7410.70
63_D67_F0.7410.70
195_S203_N0.7390.70
258_R285_S0.7380.70
537_L541_S0.7380.70
299_P426_G0.7380.70
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428_G460_R0.5080.43
288_N364_S0.5070.42
181_G420_Y0.5060.42
486_Y522_A0.5050.42
106_V404_L0.5050.42
229_S626_D0.5050.42
377_S603_S0.5050.42
286_D422_A0.5040.42
42_L850_E0.5040.42
534_T778_V0.5040.42
617_A649_Y0.5040.42
425_F875_A0.5040.42
442_T482_S0.5040.42
195_S207_A0.5030.42
297_F411_Y0.5030.42
651_V667_G0.5030.42
467_L564_A0.5030.42
624_S634_L0.5020.42
400_L598_V0.5020.42
330_F342_G0.5020.42
697_V703_A0.5020.42
721_V758_V0.5010.42
618_S640_T0.5010.42
120_N124_V0.5010.42
211_L226_T0.5010.42
332_I336_Y0.5010.42
189_Y601_P0.5010.42
314_K357_I0.5000.42
396_F630_R0.5000.42
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3rfzB 2 0.8815 100 0.083 Contact Map
3fipA 1 0.5023 100 0.467 Contact Map
3fcgA 2 0.0854 100 0.844 Contact Map
4b0mA 1 0.1469 100 0.85 Contact Map
3bwuD 1 0.1378 99.9 0.861 Contact Map
2xetA 1 0.0957 99.7 0.903 Contact Map
3l48A 1 0.0957 99.5 0.913 Contact Map
4oq1A 1 0.1959 87.6 0.972 Contact Map
4kdwA 1 0.1059 75.3 0.976 Contact Map
3e8vA 1 0.0843 70 0.977 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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