TREC - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

TREC - Trehalose-6-phosphate hydrolase

UniProt:	P28904	Sequences: MTHLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKDPRFPEDLDGDGRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALADDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSREIQPWQAGQMRGNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11402
Length:	551 (487)
Sequences:	9541 (6495)
Seq/√Len:	294.3

ECOLI - TREC SUCP MALZ GLGX YGAQ AMY2 GLGB AMY1
BACSU - O16G2 TREC O16G1 O16G3 BBMA PULA GLGB AMY
SULSO - Q7LX99 TREZ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
40_D	93_R	5.063	1.00
84_D	192_R	4.790	1.00
22_Q	38_H	4.784	1.00
91_K	195_D	4.380	1.00
131_D	158_Q	4.343	1.00
33_R	85_E	4.184	1.00
89_Q	92_S	4.160	1.00
57_V	72_A	4.008	1.00
106_T	127_Y	3.633	1.00
89_Q	93_R	3.467	1.00
42_L	47_V	3.314	1.00
33_R	36_I	3.165	1.00
22_Q	37_Q	3.139	1.00
90_A	95_I	3.122	1.00
90_A	97_I	3.121	1.00
57_V	68_A	3.074	1.00
349_M	458_T	3.046	1.00
79_T	82_D	2.941	1.00
179_R	235_E	2.919	1.00
36_I	89_Q	2.778	1.00
349_M	545_A	2.670	1.00
151_R	166_P	2.547	1.00
322_C	364_E	2.505	1.00
33_R	82_D	2.476	1.00
83_F	87_V	2.463	1.00
457_Y	460_Q	2.442	1.00
230_H	270_E	2.377	1.00
71_T	184_K	2.373	1.00
16_I	35_V	2.369	1.00
111_A	115_E	2.332	1.00
124_R	156_S	2.331	1.00
61_V	167_E	2.329	1.00
44_K	460_Q	2.321	1.00
366_I	445_V	2.317	1.00
478_Q	491_R	2.301	1.00
491_R	498_T	2.293	1.00
80_L	192_R	2.264	1.00
109_Q	167_E	2.237	1.00
39_L	93_R	2.229	1.00
117_L	153_H	2.222	1.00
541_R	544_E	2.165	1.00
85_E	89_Q	2.156	1.00
43_H	93_R	2.154	1.00
152_W	157_E	2.147	1.00
346_M	503_A	2.134	1.00
36_I	85_E	2.134	1.00
464_A	468_Q	2.127	1.00
11_G	48_D	2.084	1.00
181_E	184_K	2.015	1.00
35_V	86_L	2.015	1.00
26_G	429_A	2.012	1.00
106_T	171_L	1.999	1.00
228_R	231_E	1.977	1.00
103_F	182_L	1.954	1.00
126_F	181_E	1.907	1.00
48_D	467_K	1.898	1.00
348_A	459_Y	1.890	1.00
39_L	90_A	1.873	1.00
489_C	502_I	1.871	1.00
353_G	490_Y	1.850	1.00
493_E	498_T	1.831	1.00
153_H	156_S	1.825	1.00
478_Q	493_E	1.822	1.00
50_I	90_A	1.820	1.00
367_G	455_V	1.810	1.00
380_R	434_I	1.807	1.00
190_A	246_L	1.780	1.00
350_V	503_A	1.769	1.00
61_V	165_A	1.761	1.00
523_L	526_H	1.758	1.00
187_E	239_D	1.754	1.00
183_K	235_E	1.729	1.00
186_C	236_M	1.723	1.00
450_A	457_Y	1.717	1.00
115_E	121_S	1.715	1.00
341_V	345_K	1.709	1.00
88_T	92_S	1.701	1.00
12_V	463_I	1.696	1.00
330_V	344_A	1.693	1.00
486_V	506_S	1.688	1.00
55_F	99_L	1.680	1.00
476_N	493_E	1.676	1.00
491_R	500_L	1.674	1.00
237_N	241_F	1.673	1.00
44_K	449_L	1.665	1.00
72_A	80_L	1.650	1.00
13_I	49_A	1.645	1.00
108_T	167_E	1.632	1.00
111_A	114_R	1.595	1.00
511_P	537_A	1.582	1.00
81_D	84_D	1.580	1.00
83_F	99_L	1.577	1.00
55_F	73_I	1.565	1.00
71_T	185_V	1.565	1.00
69_N	72_A	1.561	1.00
345_K	458_T	1.546	1.00
33_R	37_Q	1.546	1.00
187_E	191_D	1.536	1.00
420_S	446_E	1.528	1.00
122_P	177_A	1.521	1.00
115_E	123_Y	1.519	1.00
180_A	184_K	1.518	1.00
174_E	228_R	1.515	1.00
511_P	539_N	1.513	1.00
10_N	474_W	1.512	1.00
180_A	239_D	1.506	1.00
421_N	446_E	1.502	1.00
57_V	75_P	1.499	1.00
29_T	76_T	1.498	1.00
369_T	439_N	1.496	1.00
71_T	188_F	1.492	1.00
123_Y	126_F	1.489	1.00
349_M	462_L	1.486	1.00
471_I	499_L	1.482	1.00
449_L	456_F	1.482	1.00
44_K	456_F	1.478	1.00
523_L	546_V	1.453	1.00
57_V	69_N	1.444	1.00
321_W	347_L	1.439	1.00
456_F	460_Q	1.433	1.00
509_I	539_N	1.432	1.00
503_A	545_A	1.429	1.00
71_T	181_E	1.417	1.00
234_H	269_S	1.413	1.00
490_Y	501_V	1.407	1.00
181_E	185_V	1.403	1.00
114_R	117_L	1.403	1.00
449_L	457_Y	1.402	1.00
353_G	472_L	1.396	1.00
36_I	86_L	1.392	1.00
424_N	430_G	1.383	1.00
460_Q	464_A	1.377	1.00
87_V	97_I	1.366	1.00
55_F	83_F	1.363	1.00
461_K	464_A	1.363	1.00
152_W	156_S	1.363	1.00
56_Y	99_L	1.358	1.00
133_E	136_T	1.357	1.00
445_V	456_F	1.353	1.00
177_A	180_A	1.345	1.00
448_A	457_Y	1.342	1.00
10_N	473_T	1.326	1.00
61_V	109_Q	1.324	1.00
106_T	178_V	1.323	1.00
35_V	52_L	1.322	1.00
451_D	457_Y	1.314	1.00
469_E	497_Q	1.303	1.00
259_H	262_R	1.299	1.00
60_Q	74_D	1.294	1.00
15_Q	53_T	1.292	1.00
302_T	306_H	1.288	1.00
486_V	510_Q	1.287	1.00
228_R	232_F	1.283	1.00
109_Q	114_R	1.282	1.00
108_T	169_A	1.267	1.00
11_G	49_A	1.262	1.00
474_W	494_W	1.262	1.00
98_I	196_G	1.235	1.00
322_C	329_I	1.232	1.00
118_N	121_S	1.229	1.00
305_R	477_Y	1.227	1.00
32_L	55_F	1.216	1.00
234_H	270_E	1.214	1.00
352_H	463_I	1.212	1.00
124_R	153_H	1.209	1.00
16_I	42_L	1.208	1.00
341_V	451_D	1.207	1.00
18_P	35_V	1.202	1.00
346_M	505_L	1.198	1.00
417_M	445_V	1.198	1.00
316_W	357_T	1.190	1.00
368_M	418_Q	1.180	1.00
103_F	186_C	1.179	1.00
83_F	194_V	1.175	1.00
125_Q	175_N	1.172	1.00
513_Q	537_A	1.167	1.00
523_L	527_N	1.163	1.00
60_Q	76_T	1.160	1.00
424_N	428_T	1.158	1.00
52_L	55_F	1.158	1.00
471_I	497_Q	1.153	1.00
329_I	333_F	1.152	1.00
98_I	247_M	1.150	1.00
73_I	83_F	1.148	1.00
82_D	85_E	1.146	1.00
43_H	95_I	1.138	1.00
116_A	156_S	1.125	1.00
19_K	76_T	1.122	1.00
116_A	129_W	1.122	1.00
32_L	73_I	1.117	1.00
499_L	524_V	1.117	1.00
101_M	186_C	1.114	1.00
379_Y	406_A	1.113	1.00
173_W	182_L	1.103	1.00
339_Y	342_P	1.102	1.00
469_E	499_L	1.096	1.00
234_H	238_R	1.096	1.00
344_A	455_V	1.095	1.00
262_R	268_G	1.091	1.00
180_A	183_K	1.091	1.00
528_Y	541_R	1.085	1.00
119_K	158_Q	1.083	1.00
121_S	124_R	1.083	1.00
103_F	199_L	1.083	1.00
176_P	180_A	1.082	1.00
36_I	40_D	1.080	1.00
118_N	156_S	1.075	1.00
80_L	188_F	1.066	1.00
523_L	528_Y	1.065	1.00
472_L	499_L	1.064	1.00
183_K	239_D	1.063	1.00
154_A	157_E	1.057	1.00
42_L	50_I	1.054	1.00
115_E	118_N	1.050	1.00
84_D	88_T	1.049	1.00
57_V	74_D	1.049	1.00
506_S	510_Q	1.047	1.00
148_S	151_R	1.039	1.00
23_D	28_G	1.033	1.00
164_F	204_L	1.032	1.00
353_G	462_L	1.030	1.00
530_E	541_R	1.030	1.00
125_Q	128_I	1.022	1.00
305_R	309_Q	1.015	1.00
32_L	83_F	1.002	1.00
305_R	479_D	0.997	1.00
86_L	97_I	0.995	1.00
132_G	152_W	0.994	1.00
188_F	192_R	0.993	1.00
206_S	226_G	0.991	1.00
414_R	417_M	0.991	1.00
257_L	310_G	0.988	1.00
202_V	205_I	0.984	1.00
206_S	228_R	0.983	1.00
43_H	94_G	0.976	1.00
237_N	242_T	0.975	1.00
502_I	546_V	0.974	1.00
301_K	305_R	0.973	1.00
471_I	494_W	0.970	1.00
38_H	41_Y	0.970	1.00
249_V	359_Y	0.967	1.00
49_A	96_R	0.967	1.00
81_D	85_E	0.966	1.00
345_K	455_V	0.961	1.00
353_G	501_V	0.960	1.00
47_V	95_I	0.956	1.00
484_S	510_Q	0.955	1.00
372_H	406_A	0.951	1.00
179_R	232_F	0.951	1.00
202_V	233_L	0.948	1.00
360_I	459_Y	0.941	1.00
18_P	52_L	0.938	1.00
99_L	194_V	0.937	1.00
201_V	204_L	0.937	1.00
96_R	195_D	0.934	1.00
186_C	240_V	0.931	1.00
299_A	302_T	0.930	1.00
350_V	505_L	0.929	1.00
493_E	496_G	0.928	1.00
12_V	47_V	0.918	1.00
174_E	232_F	0.918	1.00
25_T	29_T	0.918	1.00
191_D	243_P	0.917	1.00
239_D	242_T	0.917	1.00
24_T	33_R	0.916	1.00
143_S	147_G	0.915	1.00
234_H	268_G	0.911	1.00
298_V	302_T	0.908	1.00
185_V	188_F	0.901	1.00
259_H	264_A	0.898	1.00
31_D	34_G	0.897	1.00
509_I	541_R	0.897	1.00
138_P	141_W	0.895	1.00
190_A	240_V	0.893	1.00
486_V	508_E	0.891	1.00
115_E	122_P	0.891	1.00
149_A	161_L	0.891	1.00
187_E	242_T	0.890	1.00
208_D	222_F	0.889	1.00
480_L	500_L	0.889	1.00
83_F	86_L	0.889	1.00
335_D	507_R	0.889	1.00
126_F	177_A	0.888	1.00
457_Y	461_K	0.888	1.00
23_D	29_T	0.886	1.00
18_P	53_T	0.883	1.00
13_I	359_Y	0.881	1.00
480_L	491_R	0.878	1.00
199_L	271_L	0.877	1.00
334_G	343_A	0.874	1.00
59_P	68_A	0.874	1.00
119_K	131_D	0.873	1.00
410_R	414_R	0.873	1.00
80_L	84_D	0.869	1.00
49_A	247_M	0.869	1.00
470_A	474_W	0.869	1.00
32_L	82_D	0.867	1.00
298_V	485_P	0.867	1.00
123_Y	177_A	0.866	1.00
85_E	88_T	0.865	1.00
225_D	259_H	0.864	1.00
40_D	89_Q	0.863	1.00
428_T	432_P	0.857	1.00
465_L	469_E	0.851	1.00
352_H	358_P	0.849	1.00
182_L	185_V	0.847	1.00
179_R	183_K	0.845	1.00
371_P	374_T	0.845	1.00
240_V	248_T	0.841	1.00
420_S	424_N	0.838	1.00
87_V	194_V	0.838	1.00
116_A	121_S	0.836	1.00
152_W	155_E	0.832	1.00
507_R	543_F	0.832	1.00
238_R	242_T	0.832	1.00
141_W	145_F	0.830	1.00
134_P	137_P	0.829	1.00
15_Q	18_P	0.829	1.00
235_E	238_R	0.826	1.00
137_P	148_S	0.826	1.00
233_L	236_M	0.826	1.00
90_A	93_R	0.826	1.00
165_A	168_Q	0.822	1.00
502_I	538_M	0.822	1.00
143_S	146_G	0.821	1.00
36_I	93_R	0.818	1.00
489_C	500_L	0.818	1.00
61_V	108_T	0.814	1.00
41_Y	445_V	0.810	1.00
231_E	234_H	0.810	1.00
312_H	355_Q	0.810	1.00
445_V	449_L	0.808	1.00
42_L	95_I	0.808	1.00
132_G	137_P	0.807	1.00
528_Y	544_E	0.807	1.00
88_T	91_K	0.802	1.00
18_P	32_L	0.802	1.00
26_G	430_G	0.800	0.99
414_R	418_Q	0.800	0.99
479_D	482_P	0.800	0.99
23_D	27_S	0.799	0.99
458_T	545_A	0.797	0.99
13_I	98_I	0.797	0.99
119_K	124_R	0.796	0.99
342_P	345_K	0.796	0.99
296_D	299_A	0.796	0.99
280_L	283_D	0.796	0.99
24_T	27_S	0.796	0.99
446_E	450_A	0.789	0.99
39_L	89_Q	0.789	0.99
116_A	124_R	0.789	0.99
124_R	158_Q	0.787	0.99
540_L	544_E	0.786	0.99
110_H	113_F	0.784	0.99
206_S	232_F	0.778	0.99
120_E	123_Y	0.777	0.99
296_D	485_P	0.777	0.99
428_T	431_E	0.776	0.99
41_Y	456_F	0.776	0.99
342_P	528_Y	0.776	0.99
328_R	331_S	0.775	0.99
7_W	11_G	0.774	0.99
36_I	82_D	0.773	0.99
439_N	443_I	0.771	0.99
132_G	136_T	0.771	0.99
340_R	343_A	0.770	0.99
444_N	447_A	0.770	0.99
312_H	476_N	0.769	0.99
521_W	524_V	0.769	0.99
118_N	123_Y	0.767	0.99
32_L	86_L	0.767	0.99
40_D	44_K	0.765	0.99
465_L	524_V	0.765	0.99
273_M	357_T	0.764	0.99
50_I	86_L	0.764	0.99
257_L	264_A	0.763	0.99
198_R	325_D	0.759	0.99
52_L	86_L	0.759	0.99
119_K	156_S	0.758	0.99
74_D	77_Y	0.758	0.99
425_A	436_L	0.758	0.99
232_F	236_M	0.756	0.99
117_L	155_E	0.756	0.99
409_S	414_R	0.750	0.99
449_L	460_Q	0.748	0.99
137_P	141_W	0.747	0.99
19_K	60_Q	0.747	0.99
327_P	331_S	0.746	0.99
126_F	129_W	0.745	0.99
366_I	448_A	0.745	0.99
321_W	351_L	0.744	0.99
321_W	350_V	0.744	0.99
52_L	83_F	0.743	0.99
372_H	379_Y	0.741	0.99
103_F	185_V	0.740	0.99
208_D	228_R	0.739	0.99
11_G	96_R	0.739	0.99
411_D	414_R	0.738	0.99
293_A	299_A	0.738	0.99
250_G	271_L	0.738	0.99
253_S	326_Q	0.735	0.99
200_D	325_D	0.733	0.99
418_Q	436_L	0.732	0.99
49_A	98_I	0.732	0.99
281_K	284_Y	0.728	0.99
22_Q	34_G	0.728	0.99
453_S	457_Y	0.727	0.99
487_L	512_W	0.724	0.99
24_T	35_V	0.724	0.99
452_D	457_Y	0.723	0.99
491_R	494_W	0.723	0.99
300_L	304_F	0.720	0.99
247_M	273_M	0.720	0.99
351_L	358_P	0.720	0.99
348_A	455_V	0.720	0.99
241_F	272_S	0.719	0.99
203_N	252_M	0.717	0.99
60_Q	77_Y	0.715	0.99
421_N	447_A	0.715	0.99
174_E	206_S	0.713	0.99
30_G	34_G	0.708	0.99
299_A	303_L	0.707	0.99
477_Y	488_W	0.707	0.99
470_A	473_T	0.707	0.99
523_L	530_E	0.706	0.99
91_K	96_R	0.706	0.99
139_N	143_S	0.704	0.99
352_H	360_I	0.704	0.99
164_F	168_Q	0.703	0.99
125_Q	172_N	0.703	0.99
275_F	280_L	0.702	0.99
136_T	139_N	0.702	0.99
33_R	79_T	0.700	0.99
304_F	308_Q	0.699	0.99
280_L	284_Y	0.697	0.99
298_V	301_K	0.697	0.99
163_L	223_Y	0.696	0.99
415_T	418_Q	0.695	0.99
171_L	178_V	0.695	0.99
112_W	171_L	0.691	0.99
293_A	296_D	0.691	0.99
24_T	86_L	0.690	0.99
328_R	333_F	0.688	0.98
147_G	150_W	0.687	0.98
139_N	149_A	0.687	0.98
447_A	450_A	0.686	0.98
235_E	239_D	0.686	0.98
418_Q	425_A	0.686	0.98
321_W	329_I	0.684	0.98
139_N	142_R	0.682	0.98
369_T	443_I	0.679	0.98
39_L	95_I	0.676	0.98
521_W	526_H	0.676	0.98
230_H	234_H	0.675	0.98
101_M	199_L	0.675	0.98
47_V	50_I	0.673	0.98
487_L	540_L	0.672	0.98
278_H	281_K	0.671	0.98
104_N	170_D	0.671	0.98
208_D	226_G	0.670	0.98
416_P	419_W	0.670	0.98
277_F	280_L	0.669	0.98
122_P	126_F	0.667	0.98
278_H	306_H	0.666	0.98
494_W	497_Q	0.666	0.98
371_P	379_Y	0.664	0.98
119_K	122_P	0.663	0.98
180_A	187_E	0.663	0.98
526_H	530_E	0.663	0.98
341_V	455_V	0.662	0.98
118_N	124_R	0.660	0.98
366_I	418_Q	0.658	0.98
442_Q	447_A	0.657	0.98
204_L	224_T	0.657	0.98
118_N	122_P	0.656	0.98
410_R	413_S	0.656	0.98
121_S	156_S	0.654	0.98
128_I	131_D	0.653	0.98
327_P	330_V	0.652	0.98
472_L	475_G	0.652	0.98
409_S	412_N	0.651	0.98
261_Q	264_A	0.651	0.98
448_A	451_D	0.651	0.98
23_D	31_D	0.650	0.98
183_K	236_M	0.648	0.98
408_K	412_N	0.648	0.98
177_A	181_E	0.647	0.98
190_A	244_R	0.646	0.98
128_I	174_E	0.642	0.98
297_F	301_K	0.642	0.98
304_F	307_W	0.642	0.98
341_V	453_S	0.640	0.98
200_D	324_H	0.638	0.98
137_P	140_N	0.638	0.98
256_S	259_H	0.637	0.98
275_F	359_Y	0.637	0.98
440_Y	444_N	0.637	0.98
164_F	169_A	0.637	0.98
65_Y	200_D	0.635	0.97
186_C	199_L	0.633	0.97
421_N	441_Q	0.633	0.97
142_R	146_G	0.632	0.97
65_Y	325_D	0.632	0.97
329_I	347_L	0.631	0.97
102_V	105_H	0.631	0.97
303_L	306_H	0.630	0.97
526_H	529_E	0.629	0.97
205_I	229_A	0.628	0.97
41_Y	44_K	0.627	0.97
257_L	261_Q	0.626	0.97
178_V	181_E	0.625	0.97
187_E	243_P	0.624	0.97
470_A	497_Q	0.624	0.97
101_M	197_L	0.623	0.97
188_F	191_D	0.623	0.97
522_Q	526_H	0.621	0.97
148_S	152_W	0.620	0.97
67_V	102_V	0.620	0.97
340_R	448_A	0.620	0.97
345_K	454_S	0.619	0.97
259_H	263_Y	0.618	0.97
237_N	272_S	0.618	0.97
524_V	527_N	0.618	0.97
269_S	272_S	0.617	0.97
203_N	255_T	0.617	0.97
140_N	145_F	0.617	0.97
124_R	129_W	0.617	0.97
308_Q	355_Q	0.616	0.97
502_I	540_L	0.614	0.97
146_G	150_W	0.614	0.97
521_W	525_M	0.614	0.97
343_A	543_F	0.613	0.97
116_A	123_Y	0.612	0.97
12_V	352_H	0.611	0.97
412_N	415_T	0.610	0.97
352_H	462_L	0.610	0.97
237_N	248_T	0.609	0.97
172_N	175_N	0.607	0.97
257_L	262_R	0.606	0.97
191_D	244_R	0.606	0.97
203_N	253_S	0.605	0.97
17_Y	53_T	0.605	0.97
243_P	246_L	0.605	0.97
142_R	145_F	0.605	0.97
180_A	235_E	0.604	0.97
138_P	145_F	0.603	0.97
327_P	332_R	0.602	0.97
304_F	354_M	0.600	0.96
105_H	324_H	0.598	0.96
252_M	274_T	0.598	0.96
124_R	127_Y	0.597	0.96
349_M	353_G	0.597	0.96
364_E	459_Y	0.596	0.96
362_Q	417_M	0.596	0.96
349_M	503_A	0.595	0.96
91_K	97_I	0.595	0.96
132_G	159_Y	0.595	0.96
522_Q	525_M	0.595	0.96
509_I	542_P	0.595	0.96
256_S	260_C	0.595	0.96
447_A	451_D	0.594	0.96
60_Q	63_N	0.594	0.96
201_V	205_I	0.594	0.96
527_N	530_E	0.593	0.96
97_I	195_D	0.593	0.96
411_D	416_P	0.592	0.96
267_T	270_E	0.592	0.96
65_Y	198_R	0.592	0.96
68_A	109_Q	0.590	0.96
507_R	542_P	0.589	0.96
198_R	324_H	0.588	0.96
266_L	269_S	0.588	0.96
424_N	431_E	0.587	0.96
115_E	120_E	0.586	0.96
271_L	274_T	0.586	0.96
144_K	224_T	0.586	0.96
139_N	144_K	0.585	0.96
141_W	146_G	0.585	0.96
187_E	240_V	0.584	0.96
436_L	440_Y	0.582	0.96
48_D	95_I	0.582	0.96
101_M	185_V	0.581	0.96
184_K	187_E	0.581	0.96
477_Y	490_Y	0.580	0.96
526_H	544_E	0.580	0.96
121_S	125_Q	0.580	0.96
163_L	204_L	0.579	0.96
119_K	123_Y	0.576	0.96
379_Y	409_S	0.575	0.95
147_G	151_R	0.575	0.95
117_L	156_S	0.574	0.95
523_L	529_E	0.574	0.95
303_L	307_W	0.573	0.95
437_G	440_Y	0.573	0.95
328_R	332_R	0.572	0.95
121_S	126_F	0.571	0.95
10_N	470_A	0.571	0.95
129_W	153_H	0.570	0.95
86_L	90_A	0.570	0.95
331_S	334_G	0.569	0.95
200_D	251_E	0.569	0.95
258_E	261_Q	0.568	0.95
423_D	428_T	0.568	0.95
538_M	546_V	0.568	0.95
305_R	308_Q	0.567	0.95
179_R	206_S	0.566	0.95
309_Q	478_Q	0.566	0.95
306_H	310_G	0.565	0.95
264_A	315_A	0.565	0.95
146_G	149_A	0.565	0.95
183_K	187_E	0.564	0.95
521_W	530_E	0.563	0.95
140_N	146_G	0.563	0.95
470_A	494_W	0.562	0.95
227_P	231_E	0.562	0.95
100_D	198_R	0.562	0.95
140_N	143_S	0.561	0.95
533_P	536_C	0.557	0.95
121_S	129_W	0.556	0.95
112_W	181_E	0.556	0.95
338_E	342_P	0.555	0.95
144_K	204_L	0.555	0.95
205_I	233_L	0.554	0.94
139_N	148_S	0.554	0.94
411_D	415_T	0.554	0.94
342_P	541_R	0.554	0.94
120_E	125_Q	0.553	0.94
519_G	522_Q	0.553	0.94
13_I	357_T	0.553	0.94
165_A	170_D	0.553	0.94
25_T	28_G	0.553	0.94
18_P	77_Y	0.552	0.94
229_A	233_L	0.551	0.94
267_T	272_S	0.551	0.94
87_V	91_K	0.550	0.94
412_N	416_P	0.548	0.94
513_Q	516_Q	0.548	0.94
425_A	444_N	0.547	0.94
349_M	501_V	0.547	0.94
164_F	170_D	0.546	0.94
469_E	472_L	0.546	0.94
297_F	300_L	0.545	0.94
87_V	195_D	0.545	0.94
133_E	137_P	0.544	0.94
439_N	442_Q	0.544	0.94
260_C	263_Y	0.544	0.94
487_L	510_Q	0.544	0.94
374_T	406_A	0.543	0.94
57_V	77_Y	0.543	0.94
371_P	406_A	0.542	0.94
87_V	192_R	0.542	0.94
105_H	198_R	0.541	0.94
49_A	95_I	0.541	0.94
502_I	512_W	0.541	0.94
272_S	276_N	0.539	0.94
25_T	31_D	0.539	0.94
344_A	348_A	0.538	0.94
236_M	240_V	0.538	0.94
519_G	523_L	0.538	0.94
379_Y	408_K	0.538	0.94
480_L	489_C	0.537	0.94
226_G	229_A	0.537	0.94
47_V	360_I	0.537	0.94
309_Q	312_H	0.537	0.94
273_M	277_F	0.537	0.94
124_R	128_I	0.536	0.93
256_S	262_R	0.536	0.93
258_E	262_R	0.536	0.93
420_S	444_N	0.535	0.93
346_M	543_F	0.533	0.93
292_L	295_P	0.532	0.93
484_S	487_L	0.532	0.93
105_H	200_D	0.532	0.93
327_P	333_F	0.532	0.93
32_L	35_V	0.531	0.93
541_R	546_V	0.531	0.93
270_E	274_T	0.531	0.93
41_Y	449_L	0.530	0.93
302_T	305_R	0.530	0.93
423_D	427_F	0.530	0.93
41_Y	47_V	0.529	0.93
123_Y	181_E	0.529	0.93
125_Q	130_R	0.529	0.93
138_P	143_S	0.528	0.93
435_G	438_D	0.526	0.93
238_R	241_F	0.524	0.93
113_F	116_A	0.524	0.93
319_L	356_G	0.523	0.93
422_G	446_E	0.523	0.93
255_T	259_H	0.522	0.93
335_D	339_Y	0.522	0.93
137_P	142_R	0.521	0.93
80_L	83_F	0.518	0.92
425_A	440_Y	0.517	0.92
255_T	258_E	0.517	0.92
421_N	425_A	0.517	0.92
360_I	463_I	0.516	0.92
173_W	205_I	0.516	0.92
422_G	425_A	0.516	0.92
198_R	251_E	0.516	0.92
156_S	159_Y	0.515	0.92
143_S	149_A	0.515	0.92
260_C	264_A	0.515	0.92
225_D	254_S	0.515	0.92
406_A	409_S	0.513	0.92
149_A	152_W	0.513	0.92
535_P	538_M	0.511	0.92
320_F	323_N	0.511	0.92
522_Q	527_N	0.511	0.92
352_H	364_E	0.510	0.92
318_A	359_Y	0.510	0.92
283_D	408_K	0.510	0.92
292_L	407_S	0.510	0.92
274_T	278_H	0.509	0.92
481_L	484_S	0.508	0.92
477_Y	480_L	0.508	0.92
479_D	488_W	0.508	0.92
186_C	197_L	0.508	0.92
139_N	145_F	0.507	0.91
111_A	123_Y	0.505	0.91
448_A	454_S	0.504	0.91
282_V	303_L	0.504	0.91
522_Q	530_E	0.504	0.91
422_G	426_G	0.504	0.91
124_R	130_R	0.504	0.91
225_D	263_Y	0.502	0.91
153_H	158_Q	0.501	0.91
410_R	415_T	0.501	0.91
448_A	456_F	0.500	0.91
87_V	99_L	0.500	0.91

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2ze0A	2	0.951	100	0.152	Contact Map
1uokA	1	0.9964	100	0.157	Contact Map
4mb1A	1	0.9837	100	0.163	Contact Map
4hphA	1	0.9982	100	0.164	Contact Map
4aieA	1	0.9691	100	0.17	Contact Map
1zjaA	1	0.9964	100	0.172	Contact Map
2zicA	1	0.9637	100	0.176	Contact Map
3aj7A	1	0.9964	100	0.177	Contact Map
3wy2A	1	0.931	100	0.19	Contact Map
3zo9A	4	0.9056	100	0.205	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0133 seconds.