YIFK - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YIFK - Probable transport protein YifK

UniProt:	P27837	Sequences: MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGLNRHGKAHKLEE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11459
Length:	461 (423)
Sequences:	24683 (15963)
Seq/√Len:	776.2

ECOLI - YIFK AROP MMUP CYCA PROY ANSP PHEP GABP LYSP POTE YCAM FRLA PUUP PLAP GADC ADIC YGJI YJEM YBAT CADB ARCD YJEH TNAB
BACSU - ROCC YBXG YBGF YTNA GABP YVBW HUTM AAPA ROCE YDGF STET YCGH YBEC ASPP YHDG YFNA ARCD YECA YDAO GERBB GERAB YNDE GERKB YFKT
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97U05 Q97X49 Q7LXI7 Q97WS3 Q97ZB5 Q97XM0 Q97Z63 Q97VA6 Q97U33 Q97WD4 Q97VA8 Q97VR4 Q97Y76 Q97YN3 Q97YX9 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
136_A	340_I	4.487	1.00
322_A	334_A	4.355	1.00
384_R	388_A	3.381	1.00
376_F	411_M	3.309	1.00
53_G	245_L	3.205	1.00
325_K	334_A	3.053	1.00
231_V	235_S	2.970	1.00
13_E	227_K	2.873	1.00
226_A	232_T	2.747	1.00
77_A	316_N	2.728	1.00
228_N	231_V	2.685	1.00
18_E	239_K	2.683	1.00
168_G	254_V	2.664	1.00
93_A	313_L	2.625	1.00
314_A	324_A	2.582	1.00
327_S	333_V	2.564	1.00
322_A	325_K	2.563	1.00
129_L	344_L	2.529	1.00
14_A	239_K	2.412	1.00
224_G	315_K	2.392	1.00
166_V	170_G	2.391	1.00
282_A	286_I	2.350	1.00
65_E	386_R	2.261	1.00
337_A	341_A	2.213	1.00
81_H	89_G	2.206	1.00
137_L	141_A	2.200	1.00
225_E	308_R	2.174	1.00
133_A	344_L	2.162	1.00
311_Y	315_K	2.151	1.00
17_I	226_A	2.118	1.00
379_L	410_T	2.112	1.00
432_F	436_I	2.111	1.00
144_R	148_E	2.107	1.00
273_L	276_A	2.095	1.00
14_A	232_T	2.093	1.00
140_L	333_V	2.083	1.00
14_A	18_E	2.069	1.00
136_A	336_V	2.043	1.00
18_E	243_R	2.042	1.00
408_Y	412_A	2.028	1.00
235_S	239_K	2.023	1.00
13_E	16_H	1.994	1.00
442_T	446_K	1.993	1.00
436_I	439_L	1.990	1.00
84_M	384_R	1.969	1.00
155_M	159_T	1.951	1.00
323_M	338_V	1.944	1.00
128_A	347_S	1.932	1.00
263_E	277_K	1.926	1.00
62_S	379_L	1.926	1.00
97_W	339_S	1.918	1.00
260_P	263_E	1.901	1.00
8_L	326_V	1.895	1.00
129_L	347_S	1.886	1.00
184_G	187_N	1.875	1.00
317_R	321_A	1.856	1.00
81_H	86_P	1.855	1.00
54_L	58_F	1.853	1.00
37_T	45_V	1.827	1.00
228_N	232_T	1.773	1.00
84_M	380_I	1.768	1.00
327_S	331_V	1.760	1.00
133_A	340_I	1.733	1.00
139_N	300_N	1.728	1.00
238_G	242_W	1.717	1.00
92_T	377_V	1.715	1.00
80_A	92_T	1.711	1.00
273_L	277_K	1.706	1.00
439_L	443_A	1.701	1.00
16_H	151_F	1.688	1.00
48_A	205_A	1.668	1.00
44_S	202_F	1.652	1.00
441_V	444_I	1.649	1.00
21_A	240_V	1.647	1.00
405_W	409_V	1.645	1.00
384_R	387_R	1.643	1.00
132_V	343_L	1.636	1.00
85_S	88_F	1.633	1.00
140_L	337_A	1.616	1.00
108_I	299_C	1.616	1.00
329_H	333_V	1.608	1.00
123_A	126_I	1.589	1.00
12_L	16_H	1.582	1.00
443_A	447_V	1.578	1.00
440_A	444_I	1.562	1.00
159_T	163_V	1.557	1.00
104_G	343_L	1.551	1.00
276_A	284_A	1.535	1.00
380_I	411_M	1.519	1.00
242_W	246_I	1.517	1.00
412_A	416_C	1.517	1.00
222_T	304_Y	1.505	1.00
115_V	127_P	1.505	1.00
55_F	413_F	1.493	1.00
310_L	335_G	1.492	1.00
9_Q	330_G	1.490	1.00
141_A	329_H	1.471	1.00
169_L	254_V	1.461	1.00
80_A	377_V	1.452	1.00
334_A	338_V	1.433	1.00
160_T	290_V	1.431	1.00
306_C	339_S	1.431	1.00
393_I	396_H	1.428	1.00
276_A	281_T	1.427	1.00
60_M	241_L	1.427	1.00
311_Y	326_V	1.426	1.00
52_A	209_V	1.406	1.00
8_L	311_Y	1.405	1.00
73_T	224_G	1.404	1.00
321_A	324_A	1.403	1.00
228_N	235_S	1.389	1.00
58_F	409_V	1.387	1.00
108_I	132_V	1.381	1.00
158_V	162_I	1.381	1.00
84_M	88_F	1.379	1.00
380_I	384_R	1.377	1.00
111_I	292_L	1.373	1.00
136_A	337_A	1.362	1.00
425_E	428_R	1.361	1.00
129_L	133_A	1.358	1.00
16_H	147_G	1.358	1.00
132_V	340_I	1.349	1.00
285_G	289_F	1.339	1.00
307_G	336_V	1.336	1.00
60_M	237_V	1.334	1.00
325_K	333_V	1.330	1.00
87_F	445_Y	1.326	1.00
12_L	17_I	1.324	1.00
434_G	438_M	1.324	1.00
44_S	195_F	1.323	1.00
70_E	82_R	1.321	1.00
403_F	407_N	1.320	1.00
438_M	442_T	1.319	1.00
410_T	414_L	1.318	1.00
59_I	379_L	1.317	1.00
111_I	131_A	1.316	1.00
54_L	409_V	1.315	1.00
321_A	325_K	1.314	1.00
229_P	234_R	1.304	1.00
165_I	250_G	1.303	1.00
72_V	78_V	1.295	1.00
14_A	235_S	1.290	1.00
267_N	273_L	1.284	1.00
246_I	250_G	1.271	1.00
390_K	396_H	1.265	1.00
107_E	298_G	1.255	1.00
232_T	235_S	1.253	1.00
12_L	147_G	1.250	1.00
78_V	82_R	1.247	1.00
83_Y	381_S	1.244	1.00
135_V	299_C	1.236	1.00
426_D	429_M	1.231	1.00
428_R	431_L	1.228	1.00
269_S	273_L	1.227	1.00
61_R	238_G	1.227	1.00
32_M	110_A	1.226	1.00
25_T	244_I	1.218	1.00
164_M	168_G	1.216	1.00
97_W	310_L	1.216	1.00
436_I	440_A	1.210	1.00
62_S	407_N	1.210	1.00
310_L	319_L	1.209	1.00
125_W	129_L	1.205	1.00
437_F	441_V	1.204	1.00
15_R	19_L	1.203	1.00
46_L	253_F	1.191	1.00
416_C	420_G	1.184	1.00
72_V	82_R	1.183	1.00
387_R	390_K	1.181	1.00
181_Q	186_S	1.179	1.00
394_A	397_P	1.177	1.00
168_G	258_I	1.169	1.00
138_A	149_I	1.168	1.00
21_A	219_I	1.164	1.00
17_I	236_A	1.164	1.00
435_I	439_L	1.160	1.00
404_P	408_Y	1.157	1.00
405_W	408_Y	1.149	1.00
63_M	76_F	1.139	1.00
90_Y	94_W	1.136	1.00
20_I	222_T	1.131	1.00
267_N	270_P	1.131	1.00
390_K	393_I	1.117	1.00
80_A	88_F	1.108	1.00
150_E	300_N	1.107	1.00
261_W	264_I	1.106	1.00
149_I	153_F	1.105	1.00
198_G	201_G	1.103	1.00
69_L	394_A	1.102	1.00
130_I	134_L	1.100	1.00
424_N	428_R	1.098	1.00
163_V	167_I	1.097	1.00
334_A	337_A	1.096	1.00
227_K	232_T	1.096	1.00
22_L	243_R	1.090	1.00
430_S	434_G	1.088	1.00
69_L	396_H	1.084	1.00
341_A	345_I	1.079	1.00
11_G	227_K	1.077	1.00
427_T	431_L	1.073	1.00
148_E	152_W	1.073	1.00
126_I	130_I	1.067	1.00
315_K	324_A	1.060	1.00
115_V	119_F	1.058	1.00
77_A	312_A	1.058	1.00
38_L	45_V	1.058	1.00
143_V	304_Y	1.053	1.00
67_L	79_Y	1.053	1.00
402_L	406_A	1.048	1.00
50_I	249_V	1.037	1.00
22_L	244_I	1.035	1.00
326_V	330_G	1.034	1.00
65_E	68_F	1.033	1.00
184_G	188_L	1.033	1.00
426_D	430_S	1.027	1.00
382_Q	407_N	1.020	1.00
140_L	331_V	1.019	1.00
185_F	188_L	1.019	1.00
112_G	127_P	1.017	1.00
203_L	416_C	1.015	1.00
383_L	408_Y	1.002	1.00
411_M	415_I	1.001	1.00
389_H	393_I	0.999	1.00
153_F	297_S	0.993	1.00
136_A	140_L	0.992	1.00
162_I	166_V	0.990	1.00
82_R	389_H	0.989	1.00
415_I	419_I	0.984	1.00
407_N	411_M	0.982	1.00
431_L	434_G	0.979	1.00
402_L	405_W	0.976	1.00
214_Q	371_G	0.971	1.00
418_L	421_M	0.969	1.00
133_A	137_L	0.963	1.00
239_K	243_R	0.935	1.00
122_M	126_I	0.933	1.00
303_M	340_I	0.930	1.00
223_A	233_L	0.928	1.00
429_M	432_F	0.928	1.00
245_L	249_V	0.925	1.00
19_L	151_F	0.922	1.00
265_G	270_P	0.922	1.00
260_P	277_K	0.920	1.00
165_I	169_L	0.918	1.00
379_L	411_M	0.917	1.00
134_L	296_L	0.917	1.00
157_K	294_A	0.915	1.00
181_Q	184_G	0.913	1.00
376_F	415_I	0.913	1.00
427_T	430_S	0.912	1.00
217_E	221_I	0.911	1.00
426_D	440_A	0.910	1.00
8_L	225_E	0.909	1.00
58_F	406_A	0.906	1.00
112_G	128_A	0.903	1.00
386_R	390_K	0.900	1.00
165_I	254_V	0.900	1.00
140_L	327_S	0.900	1.00
8_L	308_R	0.898	1.00
253_F	257_T	0.898	1.00
376_F	414_L	0.896	1.00
74_G	77_A	0.889	1.00
127_P	130_I	0.888	1.00
11_G	144_R	0.886	1.00
376_F	380_I	0.885	1.00
333_V	337_A	0.883	1.00
74_G	78_V	0.878	1.00
440_A	446_K	0.877	1.00
183_I	186_S	0.877	1.00
135_V	300_N	0.875	1.00
50_I	54_L	0.875	1.00
414_L	417_V	0.870	1.00
53_G	213_Y	0.869	1.00
407_N	421_M	0.869	1.00
158_V	247_F	0.868	1.00
16_H	148_E	0.868	1.00
69_L	397_P	0.867	1.00
181_Q	185_F	0.865	1.00
106_S	364_Y	0.862	1.00
323_M	334_A	0.861	1.00
396_H	399_R	0.861	1.00
81_H	316_N	0.859	1.00
419_I	423_F	0.856	1.00
87_F	91_L	0.853	1.00
46_L	256_V	0.851	1.00
57_F	61_R	0.851	1.00
279_G	283_A	0.848	1.00
429_M	436_I	0.846	1.00
182_S	185_F	0.846	1.00
417_V	420_G	0.845	1.00
441_V	445_Y	0.844	1.00
340_I	344_L	0.844	1.00
432_F	443_A	0.843	1.00
132_V	347_S	0.840	1.00
407_N	410_T	0.840	1.00
436_I	441_V	0.839	1.00
204_T	208_I	0.837	1.00
281_T	285_G	0.836	1.00
15_R	151_F	0.835	1.00
416_C	419_I	0.835	1.00
111_I	296_L	0.830	1.00
440_A	447_V	0.829	1.00
68_F	397_P	0.829	1.00
14_A	236_A	0.829	1.00
327_S	330_G	0.827	1.00
195_F	202_F	0.825	1.00
88_F	377_V	0.824	1.00
80_A	381_S	0.822	1.00
218_L	305_S	0.822	1.00
442_T	445_Y	0.818	1.00
424_N	427_T	0.816	1.00
187_N	190_E	0.815	1.00
319_L	323_M	0.814	1.00
266_S	270_P	0.811	1.00
410_T	413_F	0.808	1.00
444_I	447_V	0.807	1.00
417_V	421_M	0.807	1.00
425_E	429_M	0.807	1.00
137_L	140_L	0.806	1.00
111_I	295_A	0.804	1.00
387_R	404_P	0.804	1.00
432_F	439_L	0.804	1.00
258_I	274_T	0.803	1.00
186_S	189_T	0.803	1.00
58_F	62_S	0.800	1.00
94_W	319_L	0.800	1.00
148_E	151_F	0.798	1.00
112_G	124_Q	0.797	1.00
433_V	436_I	0.796	1.00
37_T	41_A	0.794	1.00
125_W	347_S	0.793	1.00
109_T	363_V	0.792	1.00
135_V	303_M	0.788	1.00
395_S	399_R	0.786	1.00
269_S	272_V	0.785	1.00
26_I	29_G	0.784	1.00
85_S	446_K	0.783	1.00
106_S	211_A	0.780	1.00
389_H	394_A	0.777	1.00
431_L	441_V	0.776	1.00
103_V	367_S	0.775	1.00
66_M	79_Y	0.775	1.00
427_T	440_A	0.774	1.00
413_F	417_V	0.773	1.00
164_M	275_F	0.773	1.00
115_V	292_L	0.770	1.00
214_Q	375_W	0.769	1.00
438_M	441_V	0.767	1.00
383_L	407_N	0.767	1.00
57_F	238_G	0.767	1.00
47_L	202_F	0.765	1.00
199_W	202_F	0.764	1.00
169_L	250_G	0.760	1.00
230_Q	397_P	0.758	1.00
66_M	382_Q	0.758	1.00
11_G	143_V	0.757	1.00
25_T	240_V	0.754	1.00
96_Y	100_W	0.753	1.00
431_L	435_I	0.750	1.00
15_R	148_E	0.750	1.00
341_A	344_L	0.746	1.00
101_M	342_I	0.744	1.00
141_A	145_L	0.744	1.00
366_A	370_P	0.742	1.00
432_F	435_I	0.742	1.00
182_S	186_S	0.742	1.00
383_L	387_R	0.741	1.00
382_Q	386_R	0.741	1.00
23_G	154_A	0.740	1.00
59_I	414_L	0.739	1.00
30_L	251_A	0.736	1.00
408_Y	411_M	0.733	1.00
63_M	378_I	0.733	1.00
429_M	438_M	0.730	1.00
165_I	251_A	0.725	1.00
47_L	51_I	0.723	1.00
280_I	283_A	0.721	1.00
381_S	385_F	0.720	1.00
443_A	446_K	0.719	1.00
116_Q	124_Q	0.718	1.00
394_A	399_R	0.715	1.00
24_G	301_S	0.712	1.00
228_N	234_R	0.711	1.00
84_M	381_S	0.707	1.00
105_I	363_V	0.707	1.00
400_S	403_F	0.706	1.00
234_R	237_V	0.704	1.00
77_A	81_H	0.702	1.00
140_L	329_H	0.701	1.00
398_F	401_I	0.701	1.00
432_F	437_F	0.700	1.00
185_F	257_T	0.698	1.00
139_N	304_Y	0.696	1.00
428_R	432_F	0.693	1.00
102_A	366_A	0.691	1.00
94_W	436_I	0.691	1.00
403_F	406_A	0.689	1.00
184_G	189_T	0.688	1.00
26_I	157_K	0.688	1.00
129_L	348_C	0.685	1.00
145_L	148_E	0.685	1.00
426_D	432_F	0.685	1.00
125_W	128_A	0.683	1.00
47_L	50_I	0.681	1.00
370_P	374_P	0.679	1.00
11_G	15_R	0.679	1.00
322_A	338_V	0.678	1.00
147_G	151_F	0.675	1.00
95_S	374_P	0.675	1.00
46_L	50_I	0.673	1.00
26_I	247_F	0.673	1.00
43_P	256_V	0.672	1.00
170_G	176_F	0.671	1.00
310_L	338_V	0.667	1.00
139_N	336_V	0.664	1.00
15_R	18_E	0.663	1.00
58_F	410_T	0.662	1.00
18_E	236_A	0.661	1.00
203_L	420_G	0.660	1.00
389_H	396_H	0.659	1.00
56_V	216_V	0.659	1.00
69_L	390_K	0.659	1.00
51_I	206_L	0.658	1.00
116_Q	120_P	0.658	1.00
45_V	252_I	0.654	1.00
439_L	442_T	0.652	1.00
24_G	302_G	0.652	1.00
27_G	248_Y	0.651	1.00
431_L	438_M	0.651	1.00
314_A	323_M	0.651	1.00
224_G	311_Y	0.651	1.00
323_M	335_G	0.650	1.00
73_T	311_Y	0.650	1.00
308_R	311_Y	0.648	1.00
105_I	346_G	0.644	1.00
131_A	299_C	0.643	1.00
140_L	336_V	0.643	1.00
275_F	278_I	0.642	1.00
99_M	371_G	0.642	1.00
83_Y	384_R	0.641	1.00
83_Y	385_F	0.640	1.00
117_F	288_N	0.640	1.00
307_G	335_G	0.640	1.00
401_I	405_W	0.640	1.00
60_M	216_V	0.639	1.00
282_A	285_G	0.638	1.00
250_G	254_V	0.635	1.00
108_I	112_G	0.634	1.00
8_L	11_G	0.631	1.00
156_I	290_V	0.631	1.00
328_R	333_V	0.630	1.00
18_E	21_A	0.629	1.00
414_L	418_L	0.628	1.00
77_A	93_A	0.628	1.00
303_M	307_G	0.627	1.00
425_E	430_S	0.625	1.00
143_V	222_T	0.624	1.00
64_G	68_F	0.623	1.00
135_V	296_L	0.623	1.00
114_Y	291_V	0.621	1.00
239_K	242_W	0.621	1.00
221_I	305_S	0.621	1.00
159_T	162_I	0.620	1.00
429_M	440_A	0.620	1.00
34_A	252_I	0.617	1.00
115_V	131_A	0.616	1.00
390_K	394_A	0.616	1.00
107_E	110_A	0.615	1.00
425_E	432_F	0.614	1.00
275_F	280_I	0.613	1.00
225_E	332_P	0.612	1.00
429_M	434_G	0.612	1.00
407_N	413_F	0.611	1.00
76_F	217_E	0.611	1.00
426_D	439_L	0.611	1.00
306_C	310_L	0.610	1.00
103_V	106_S	0.609	1.00
436_I	443_A	0.608	1.00
220_G	237_V	0.606	1.00
432_F	441_V	0.604	1.00
214_Q	217_E	0.604	1.00
22_L	154_A	0.604	1.00
332_P	335_G	0.603	1.00
433_V	437_F	0.603	1.00
430_S	433_V	0.603	1.00
243_R	247_F	0.603	1.00
85_S	89_G	0.602	1.00
62_S	400_S	0.602	1.00
251_A	255_I	0.599	1.00
270_P	275_F	0.598	1.00
233_L	237_V	0.596	1.00
46_L	249_V	0.596	1.00
294_A	297_S	0.595	1.00
400_S	407_N	0.594	1.00
345_I	348_C	0.592	1.00
103_V	107_E	0.592	1.00
112_G	115_V	0.592	1.00
62_S	410_T	0.592	1.00
49_Y	212_S	0.592	1.00
67_L	233_L	0.588	1.00
147_G	300_N	0.586	1.00
19_L	154_A	0.585	1.00
407_N	414_L	0.584	1.00
133_A	136_A	0.583	1.00
36_S	361_V	0.583	1.00
132_V	344_L	0.583	1.00
100_W	302_G	0.583	1.00
243_R	246_I	0.581	1.00
254_V	257_T	0.580	1.00
156_I	160_T	0.580	1.00
274_T	278_I	0.580	1.00
52_A	210_V	0.577	1.00
437_F	440_A	0.577	1.00
201_G	204_T	0.576	1.00
152_W	155_M	0.576	1.00
195_F	199_W	0.576	1.00
66_M	83_Y	0.574	1.00
118_W	289_F	0.574	1.00
77_A	89_G	0.574	1.00
430_S	436_I	0.574	1.00
275_F	283_A	0.573	1.00
265_G	269_S	0.572	1.00
385_F	389_H	0.572	1.00
426_D	431_L	0.572	1.00
107_E	299_C	0.571	1.00
151_F	155_M	0.571	1.00
432_F	444_I	0.570	1.00
412_A	415_I	0.570	1.00
154_A	157_K	0.570	1.00
376_F	418_L	0.569	1.00
226_A	233_L	0.569	1.00
432_F	440_A	0.568	1.00
187_N	191_H	0.568	1.00
432_F	438_M	0.568	1.00
142_A	145_L	0.568	1.00
33_G	364_Y	0.567	1.00
80_A	89_G	0.566	1.00
195_F	198_G	0.565	1.00
419_I	422_Y	0.565	1.00
350_N	354_P	0.564	1.00
360_F	364_Y	0.564	1.00
289_F	293_T	0.564	1.00
439_L	446_K	0.562	1.00
44_S	194_F	0.562	1.00
431_L	436_I	0.562	1.00
428_R	435_I	0.562	1.00
184_G	257_T	0.559	1.00
92_T	374_P	0.559	1.00
61_R	406_A	0.559	1.00
76_F	221_I	0.557	1.00
134_L	138_A	0.556	1.00
440_A	443_A	0.556	1.00
67_L	220_G	0.554	1.00
430_S	443_A	0.554	1.00
190_E	194_F	0.554	1.00
136_A	303_M	0.553	1.00
427_T	432_F	0.552	1.00
162_I	165_I	0.550	1.00
13_E	144_R	0.550	1.00
36_S	39_K	0.549	1.00
383_L	404_P	0.549	1.00
107_E	295_A	0.547	1.00
310_L	314_A	0.547	1.00
21_A	25_T	0.544	1.00
182_S	188_L	0.543	1.00
400_S	406_A	0.542	1.00
417_V	422_Y	0.542	1.00
199_W	203_L	0.542	1.00
322_A	326_V	0.541	1.00
145_L	149_I	0.539	1.00
75_S	220_G	0.539	1.00
217_E	375_W	0.536	1.00
361_V	364_Y	0.536	1.00
113_V	124_Q	0.536	1.00
214_Q	367_S	0.535	1.00
266_S	269_S	0.534	1.00
40_W	204_T	0.533	1.00
24_G	218_L	0.533	1.00
101_M	346_G	0.533	1.00
146_Y	304_Y	0.533	1.00
338_V	342_I	0.532	1.00
60_M	64_G	0.532	1.00
35_A	38_L	0.532	1.00
167_I	280_I	0.530	1.00
185_F	189_T	0.530	1.00
433_V	438_M	0.530	1.00
243_R	250_G	0.529	1.00
52_A	213_Y	0.529	1.00
219_I	233_L	0.529	1.00
131_A	135_V	0.529	1.00
26_I	31_F	0.528	1.00
95_S	373_V	0.527	1.00
251_A	271_F	0.526	1.00
427_T	436_I	0.525	1.00
230_Q	395_S	0.525	1.00
229_P	232_T	0.524	1.00
114_Y	272_V	0.523	1.00
416_C	421_M	0.523	1.00
118_W	288_N	0.523	1.00
30_L	33_G	0.522	1.00
226_A	236_A	0.520	1.00
437_F	445_Y	0.519	1.00
428_R	442_T	0.518	1.00
211_A	367_S	0.518	1.00
34_A	38_L	0.517	1.00
59_I	217_E	0.517	1.00
286_I	290_V	0.517	1.00
46_L	49_Y	0.516	1.00
143_V	147_G	0.516	1.00
10_R	227_K	0.515	1.00
41_A	205_A	0.515	1.00
190_E	193_G	0.515	1.00
131_A	296_L	0.515	1.00
130_I	133_A	0.515	1.00
440_A	445_Y	0.514	1.00
49_Y	252_I	0.514	1.00
20_I	23_G	0.511	1.00
371_G	374_P	0.510	1.00
410_T	421_M	0.510	1.00
22_L	25_T	0.509	1.00
183_I	188_L	0.508	1.00
308_R	326_V	0.507	1.00
326_V	329_H	0.507	1.00
372_M	414_L	0.506	1.00
69_L	385_F	0.506	1.00
17_I	219_I	0.506	1.00
354_P	362_Y	0.505	1.00
386_R	403_F	0.505	1.00
28_V	107_E	0.502	1.00
231_V	234_R	0.501	1.00
150_E	297_S	0.501	1.00
37_T	205_A	0.501	1.00
48_A	209_V	0.500	1.00
393_I	397_P	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.9089	100	0.292	Contact Map
4djkA	2	0.8959	100	0.357	Contact Map
3giaA	1	0.9132	100	0.362	Contact Map
3dh4A	3	0.9197	99.1	0.848	Contact Map
2xq2A	2	0.9197	99	0.853	Contact Map
2jlnA	1	0.898	99	0.857	Contact Map
4wgvA	2	0.8069	98.1	0.891	Contact Map
2a65A	2	0.9241	97.8	0.898	Contact Map
4xp4A	1	0.9328	97.2	0.909	Contact Map
4us3A	1	0.8286	97	0.913	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0136 seconds.