WECC - ECOLI - GREMLIN Contacts

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WECC - UDP-N-acetyl-D-mannosamine dehydrogenase

UniProt:	P27829	Sequences: MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQNPQQARLIRTAREVNDHKPFWVIDQVKAAVADCLAATDKRASELKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLTGLCTLAQLDEALATADVLVMLVDHSQFKVINGDNVHQQYVVDAKGVWR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11452
Length:	420 (390)
Sequences:	8355 (5054)
Seq/√Len:	255.9

ECOLI - WECC UDG
BACSU - TUAD YTCA YWQF
HALSA - Q9HQQ9 Q9HSW5
SULSO - Q7LXG4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
127_E	206_R	5.041	1.00
36_Q	40_D	4.815	1.00
360_V	399_F	4.198	1.00
5_T	28_Q	3.507	1.00
303_V	391_V	3.460	1.00
333_N	397_S	3.363	1.00
322_K	356_E	3.324	1.00
181_T	184_C	3.214	1.00
322_K	358_L	3.163	1.00
41_T	46_E	3.075	1.00
155_A	188_A	2.925	1.00
203_T	242_E	2.712	1.00
303_V	389_V	2.708	1.00
324_A	387_A	2.641	1.00
24_S	60_T	2.532	1.00
297_F	348_L	2.519	1.00
153_N	181_T	2.482	1.00
325_C	346_A	2.473	1.00
7_S	76_A	2.435	1.00
131_E	154_I	2.435	1.00
103_R	136_M	2.425	1.00
234_A	302_Q	2.414	1.00
204_N	207_T	2.396	1.00
43_N	69_A	2.334	1.00
283_R	290_E	2.289	1.00
40_D	44_R	2.258	1.00
345_I	393_L	2.230	1.00
329_A	364_I	2.228	1.00
110_K	113_A	2.215	1.00
239_N	242_E	2.156	1.00
28_Q	68_R	2.132	1.00
168_V	172_K	2.130	1.00
27_K	194_I	2.098	1.00
78_A	191_L	2.080	1.00
358_L	387_A	2.025	1.00
11_L	31_G	1.999	1.00
392_M	418_V	1.994	1.00
323_I	355_G	1.991	1.00
103_R	132_W	1.963	1.00
36_Q	71_T	1.934	1.00
215_E	247_A	1.931	1.00
37_H	40_D	1.894	1.00
217_S	225_F	1.888	1.00
203_T	211_C	1.876	1.00
28_Q	66_F	1.875	1.00
88_K	92_E	1.854	1.00
47_I	58_V	1.827	1.00
384_L	407_V	1.826	1.00
379_Q	382_E	1.804	1.00
186_A	190_E	1.799	1.00
79_W	113_A	1.796	1.00
279_P	286_R	1.788	1.00
210_M	233_C	1.777	1.00
221_V	288_A	1.771	1.00
324_A	383_A	1.742	1.00
185_S	202_V	1.741	1.00
358_L	377_L	1.739	1.00
35_N	38_A	1.721	1.00
100_S	103_R	1.720	1.00
185_S	189_S	1.689	1.00
281_Q	286_R	1.671	1.00
5_T	75_E	1.645	1.00
5_T	30_I	1.639	1.00
403_N	406_N	1.636	1.00
6_I	191_L	1.621	1.00
99_E	103_R	1.614	1.00
20_A	58_V	1.581	1.00
24_S	61_A	1.573	1.00
99_E	128_K	1.573	1.00
40_D	43_N	1.570	1.00
7_S	79_W	1.568	1.00
218_F	222_N	1.566	1.00
298_W	302_Q	1.562	1.00
114_L	187_R	1.540	1.00
286_R	290_E	1.532	1.00
189_S	202_V	1.530	1.00
275_V	286_R	1.526	1.00
33_D	39_V	1.525	1.00
218_F	254_N	1.519	1.00
186_A	201_V	1.512	1.00
348_L	351_Q	1.502	1.00
21_A	24_S	1.480	1.00
20_A	67_L	1.477	1.00
328_L	359_V	1.475	1.00
42_I	69_A	1.467	1.00
22_F	191_L	1.464	1.00
349_I	355_G	1.451	1.00
231_L	298_W	1.448	1.00
332_P	395_D	1.445	1.00
397_S	400_K	1.445	1.00
381_D	406_N	1.441	1.00
182_P	186_A	1.439	1.00
41_T	48_H	1.435	1.00
55_A	59_K	1.435	1.00
53_D	56_S	1.420	1.00
234_A	298_W	1.417	1.00
303_V	413_V	1.409	1.00
232_I	282_A	1.397	1.00
78_A	114_L	1.394	1.00
260_P	415_A	1.389	1.00
56_S	60_T	1.382	1.00
99_E	129_M	1.372	1.00
231_L	295_K	1.370	1.00
39_V	71_T	1.354	1.00
20_A	57_V	1.351	1.00
190_E	193_K	1.347	1.00
343_M	347_E	1.343	1.00
300_I	345_I	1.342	1.00
109_L	113_A	1.336	1.00
37_H	41_T	1.325	1.00
21_A	171_I	1.310	1.00
226_A	244_I	1.300	1.00
242_E	245_R	1.294	1.00
180_M	185_S	1.289	1.00
106_A	137_R	1.273	1.00
363_N	398_Q	1.264	1.00
221_V	225_F	1.253	1.00
112_G	153_N	1.242	1.00
187_R	190_E	1.241	1.00
39_V	69_A	1.235	1.00
231_L	235_D	1.233	1.00
96_T	100_S	1.225	1.00
284_L	287_T	1.218	1.00
384_L	390_L	1.214	1.00
302_Q	413_V	1.211	1.00
306_A	413_V	1.204	1.00
300_I	348_L	1.203	1.00
324_A	390_L	1.202	1.00
211_C	246_L	1.194	1.00
30_I	76_A	1.193	1.00
322_K	386_T	1.192	1.00
221_V	284_L	1.188	1.00
153_N	183_V	1.188	1.00
41_T	44_R	1.186	1.00
165_Q	168_V	1.184	1.00
24_S	171_I	1.183	1.00
284_L	291_V	1.182	1.00
74_V	110_K	1.179	1.00
43_N	68_R	1.178	1.00
103_R	107_P	1.178	1.00
131_E	135_E	1.176	1.00
42_I	67_L	1.175	1.00
30_I	68_R	1.175	1.00
57_V	167_M	1.172	1.00
128_K	132_W	1.171	1.00
180_M	184_C	1.165	1.00
356_E	375_C	1.165	1.00
233_C	240_V	1.160	1.00
78_A	187_R	1.157	1.00
157_C	192_Y	1.153	1.00
125_S	129_M	1.148	1.00
204_N	242_E	1.146	1.00
153_N	184_C	1.142	1.00
9_I	101_A	1.141	1.00
61_A	66_F	1.138	1.00
262_V	289_R	1.137	1.00
324_A	358_L	1.137	1.00
30_I	75_E	1.134	1.00
388_D	408_H	1.133	1.00
344_E	347_E	1.124	1.00
397_S	401_V	1.121	1.00
297_F	301_D	1.110	1.00
251_P	254_N	1.109	1.00
323_I	389_V	1.100	1.00
347_E	350_A	1.097	1.00
214_T	229_L	1.094	1.00
326_F	402_I	1.092	1.00
102_A	106_A	1.092	1.00
130_A	134_A	1.091	1.00
283_R	294_H	1.084	1.00
172_K	197_E	1.083	1.00
112_G	151_D	1.078	1.00
38_A	48_H	1.076	1.00
86_P	94_D	1.075	1.00
9_I	79_W	1.075	1.00
304_K	355_G	1.075	1.00
127_E	131_E	1.071	1.00
75_E	110_K	1.062	1.00
169_E	172_K	1.057	1.00
183_V	187_R	1.057	1.00
229_L	240_V	1.053	1.00
189_S	193_K	1.053	1.00
114_L	155_A	1.053	1.00
11_L	19_A	1.051	1.00
346_A	350_A	1.050	1.00
193_K	199_E	1.048	1.00
207_T	238_I	1.042	1.00
117_L	126_T	1.039	1.00
238_I	243_L	1.038	1.00
369_K	375_C	1.034	1.00
30_I	70_S	1.030	1.00
241_W	245_R	1.024	1.00
103_R	133_L	1.023	1.00
39_V	43_N	1.022	1.00
7_S	73_P	1.022	1.00
321_L	388_D	1.019	1.00
100_S	104_S	1.017	1.00
115_V	133_L	1.017	1.00
77_D	113_A	1.012	1.00
81_I	105_I	1.002	1.00
57_V	60_T	0.998	1.00
106_A	136_M	0.994	1.00
7_S	32_V	0.990	1.00
24_S	56_S	0.989	1.00
151_D	183_V	0.989	1.00
344_E	348_L	0.988	1.00
184_C	188_A	0.986	1.00
231_L	294_H	0.979	1.00
207_T	243_L	0.977	1.00
178_G	188_A	0.974	1.00
6_I	22_F	0.973	1.00
111_K	151_D	0.971	1.00
19_A	31_G	0.968	1.00
301_D	305_A	0.964	1.00
126_T	205_S	0.960	1.00
304_K	318_A	0.958	1.00
303_V	415_A	0.957	1.00
189_S	201_V	0.957	1.00
127_E	205_S	0.953	1.00
364_I	376_T	0.952	1.00
326_F	390_L	0.951	1.00
182_P	185_S	0.951	1.00
93_P	122_P	0.950	1.00
220_D	289_R	0.949	1.00
104_S	107_P	0.948	1.00
347_E	351_Q	0.943	1.00
294_H	297_F	0.943	1.00
171_I	197_E	0.941	1.00
382_E	385_A	0.937	1.00
133_L	137_R	0.934	1.00
392_M	412_V	0.933	1.00
114_L	184_C	0.932	1.00
322_K	387_A	0.932	1.00
328_L	337_L	0.928	1.00
109_L	152_V	0.924	1.00
233_C	243_L	0.922	1.00
186_A	189_S	0.919	1.00
282_A	285_I	0.919	1.00
21_A	170_L	0.917	1.00
296_P	344_E	0.913	1.00
395_D	416_K	0.913	1.00
328_L	340_S	0.912	1.00
277_Q	280_Q	0.910	1.00
318_A	355_G	0.909	1.00
7_S	30_I	0.904	1.00
389_V	411_Y	0.901	1.00
54_L	58_V	0.901	1.00
6_I	27_K	0.897	1.00
186_A	202_V	0.891	1.00
116_I	188_A	0.889	1.00
306_A	411_Y	0.887	1.00
105_I	115_V	0.885	1.00
323_I	391_V	0.885	1.00
129_M	133_L	0.882	1.00
25_R	194_I	0.881	1.00
19_A	67_L	0.879	1.00
302_Q	305_A	0.878	1.00
61_A	64_G	0.876	1.00
307_V	321_L	0.875	1.00
18_T	170_L	0.871	1.00
112_G	183_V	0.871	1.00
78_A	116_I	0.870	1.00
326_F	399_F	0.868	1.00
337_L	368_P	0.864	1.00
320_E	356_E	0.860	1.00
342_A	393_L	0.860	1.00
303_V	323_I	0.859	0.99
276_A	280_Q	0.853	0.99
99_E	132_W	0.850	0.99
350_A	374_L	0.846	0.99
102_A	117_L	0.846	0.99
130_A	205_S	0.845	0.99
11_L	67_L	0.843	0.99
377_L	383_A	0.843	0.99
248_N	255_I	0.841	0.99
81_I	98_V	0.840	0.99
260_P	393_L	0.839	0.99
128_K	131_E	0.838	0.99
185_S	201_V	0.835	0.99
109_L	134_A	0.834	0.99
189_S	199_E	0.834	0.99
278_N	282_A	0.834	0.99
32_V	70_S	0.832	0.99
78_A	188_A	0.831	0.99
272_W	289_R	0.830	0.99
262_V	271_P	0.829	0.99
34_I	104_S	0.825	0.99
102_A	130_A	0.821	0.99
358_L	386_T	0.816	0.99
260_P	299_V	0.809	0.99
244_I	258_P	0.809	0.99
232_I	274_I	0.808	0.99
77_D	187_R	0.805	0.99
293_D	344_E	0.803	0.99
25_R	195_F	0.803	0.99
377_L	382_E	0.801	0.99
201_V	249_R	0.801	0.99
276_A	279_P	0.793	0.99
365_H	376_T	0.793	0.99
93_P	273_F	0.790	0.99
161_V	170_L	0.789	0.99
340_S	343_M	0.787	0.99
106_A	133_L	0.785	0.99
102_A	133_L	0.779	0.99
358_L	375_C	0.779	0.99
337_L	364_I	0.777	0.99
303_V	349_I	0.774	0.99
275_V	285_I	0.774	0.99
275_V	289_R	0.771	0.99
380_L	384_L	0.768	0.99
299_V	413_V	0.767	0.99
105_I	108_V	0.764	0.99
328_L	346_A	0.763	0.99
337_L	343_M	0.763	0.99
32_V	71_T	0.762	0.99
118_E	192_Y	0.762	0.99
58_V	67_L	0.760	0.99
299_V	415_A	0.759	0.99
222_N	256_L	0.758	0.99
111_K	150_A	0.758	0.99
308_A	317_R	0.757	0.99
32_V	104_S	0.757	0.99
294_H	301_D	0.755	0.99
179_G	185_S	0.751	0.99
116_I	191_L	0.749	0.99
395_D	400_K	0.745	0.99
326_F	384_L	0.744	0.99
46_E	55_A	0.744	0.99
112_G	152_V	0.742	0.99
8_V	19_A	0.741	0.99
332_P	397_S	0.740	0.99
369_K	373_G	0.739	0.98
324_A	384_L	0.738	0.98
346_A	359_V	0.735	0.98
81_I	115_V	0.733	0.98
297_F	344_E	0.732	0.98
103_R	137_R	0.730	0.98
380_L	398_Q	0.729	0.98
217_S	285_I	0.727	0.98
155_A	180_M	0.720	0.98
79_W	105_I	0.718	0.98
218_F	256_L	0.718	0.98
174_D	251_P	0.713	0.98
308_A	318_A	0.712	0.98
132_W	135_E	0.708	0.98
240_V	244_I	0.707	0.98
241_W	257_Q	0.707	0.98
11_L	33_D	0.705	0.98
162_L	165_Q	0.705	0.98
180_M	202_V	0.704	0.98
46_E	59_K	0.704	0.98
73_P	79_W	0.703	0.98
18_T	175_R	0.701	0.98
369_K	372_T	0.700	0.98
378_A	382_E	0.699	0.98
222_N	226_A	0.699	0.98
38_A	41_T	0.697	0.98
404_G	407_V	0.696	0.98
131_E	134_A	0.694	0.98
65_G	68_R	0.694	0.98
350_A	357_T	0.693	0.98
207_T	242_E	0.693	0.98
390_L	399_F	0.692	0.98
260_P	332_P	0.692	0.98
370_K	373_G	0.691	0.98
107_P	136_M	0.691	0.98
235_D	281_Q	0.689	0.98
38_A	42_I	0.688	0.98
27_K	78_A	0.688	0.98
50_V	363_N	0.684	0.98
18_T	22_F	0.684	0.98
21_A	167_M	0.684	0.98
103_R	135_E	0.682	0.97
325_C	391_V	0.682	0.97
102_A	129_M	0.681	0.97
98_V	102_A	0.681	0.97
232_I	278_N	0.680	0.97
228_E	291_V	0.680	0.97
46_E	54_L	0.679	0.97
126_T	156_Y	0.678	0.97
98_V	125_S	0.678	0.97
106_A	115_V	0.676	0.97
308_A	321_L	0.675	0.97
229_L	274_I	0.674	0.97
241_W	259_G	0.674	0.97
28_Q	75_E	0.674	0.97
308_A	319_S	0.673	0.97
79_W	108_V	0.665	0.97
55_A	58_V	0.664	0.97
203_T	207_T	0.661	0.97
102_A	132_W	0.660	0.97
225_F	229_L	0.658	0.97
32_V	101_A	0.657	0.97
326_F	380_L	0.657	0.97
307_V	389_V	0.655	0.97
307_V	323_I	0.653	0.97
34_I	97_Y	0.653	0.97
350_A	373_G	0.652	0.97
23_A	61_A	0.652	0.97
241_W	417_G	0.652	0.97
199_E	249_R	0.651	0.97
80_L	191_L	0.650	0.97
245_R	248_N	0.650	0.97
177_I	199_E	0.649	0.97
386_T	408_H	0.648	0.97
8_V	18_T	0.646	0.96
271_P	289_R	0.646	0.96
13_Y	338_R	0.646	0.96
33_D	71_T	0.646	0.96
293_D	296_P	0.645	0.96
326_F	392_M	0.644	0.96
87_F	272_W	0.644	0.96
188_A	192_Y	0.644	0.96
27_K	191_L	0.642	0.96
404_G	412_V	0.641	0.96
275_V	282_A	0.637	0.96
117_L	129_M	0.637	0.96
220_D	262_V	0.636	0.96
362_P	399_F	0.635	0.96
73_P	104_S	0.635	0.96
244_I	257_Q	0.635	0.96
155_A	178_G	0.634	0.96
259_G	341_P	0.634	0.96
250_H	253_V	0.634	0.96
74_V	108_V	0.632	0.96
402_I	406_N	0.631	0.96
177_I	211_C	0.631	0.96
118_E	157_C	0.630	0.96
244_I	248_N	0.630	0.96
161_V	166_V	0.629	0.96
283_R	287_T	0.628	0.96
300_I	304_K	0.627	0.96
73_P	113_A	0.627	0.96
287_T	290_E	0.624	0.96
390_L	407_V	0.622	0.96
120_T	266_C	0.621	0.96
177_I	185_S	0.621	0.96
272_W	293_D	0.620	0.96
95_M	99_E	0.620	0.96
88_K	99_E	0.620	0.96
296_P	345_I	0.620	0.96
371_L	374_L	0.620	0.96
128_K	277_Q	0.620	0.96
177_I	189_S	0.619	0.96
98_V	117_L	0.618	0.95
245_R	257_Q	0.618	0.95
176_V	211_C	0.617	0.95
25_R	171_I	0.617	0.95
304_K	308_A	0.617	0.95
81_I	117_L	0.616	0.95
360_V	380_L	0.613	0.95
189_S	200_C	0.613	0.95
104_S	108_V	0.611	0.95
153_N	187_R	0.607	0.95
328_L	342_A	0.607	0.95
364_I	368_P	0.607	0.95
359_V	365_H	0.606	0.95
282_A	286_R	0.605	0.95
163_P	330_F	0.605	0.95
11_L	42_I	0.604	0.95
137_R	150_A	0.604	0.95
106_A	152_V	0.603	0.95
180_M	205_S	0.603	0.95
47_I	55_A	0.603	0.95
216_N	270_D	0.602	0.95
226_A	229_L	0.601	0.95
120_T	270_D	0.598	0.95
231_L	234_A	0.597	0.95
295_K	298_W	0.595	0.94
53_D	57_V	0.594	0.94
57_V	61_A	0.593	0.94
275_V	279_P	0.592	0.94
271_P	285_I	0.591	0.94
9_I	73_P	0.590	0.94
24_S	57_V	0.588	0.94
300_I	318_A	0.588	0.94
346_A	374_L	0.588	0.94
302_Q	306_A	0.587	0.94
77_D	111_K	0.587	0.94
159_E	266_C	0.586	0.94
85_T	119_S	0.584	0.94
108_V	113_A	0.584	0.94
183_V	186_A	0.583	0.94
265_H	269_V	0.582	0.94
189_S	196_L	0.582	0.94
337_L	342_A	0.581	0.94
83_V	97_Y	0.580	0.94
99_E	133_L	0.578	0.94
296_P	341_P	0.577	0.94
403_N	407_V	0.577	0.94
54_L	57_V	0.577	0.94
175_R	215_E	0.575	0.93
118_E	175_R	0.574	0.93
359_V	374_L	0.574	0.93
25_R	197_E	0.573	0.93
350_A	356_E	0.573	0.93
207_T	211_C	0.573	0.93
224_A	284_L	0.572	0.93
68_R	75_E	0.571	0.93
218_F	226_A	0.571	0.93
123_V	134_A	0.568	0.93
232_I	236_Q	0.566	0.93
175_R	192_Y	0.565	0.93
210_M	229_L	0.565	0.93
214_T	217_S	0.564	0.93
118_E	269_V	0.563	0.93
283_R	286_R	0.563	0.93
196_L	200_C	0.562	0.93
73_P	76_A	0.562	0.93
116_I	155_A	0.560	0.93
109_L	137_R	0.560	0.93
39_V	42_I	0.558	0.92
5_T	77_D	0.557	0.92
118_E	163_P	0.556	0.92
160_R	215_E	0.556	0.92
382_E	386_T	0.555	0.92
163_P	269_V	0.554	0.92
97_Y	101_A	0.553	0.92
303_V	318_A	0.552	0.92
230_S	295_K	0.551	0.92
375_C	386_T	0.551	0.92
359_V	376_T	0.550	0.92
87_F	91_H	0.549	0.92
107_P	111_K	0.547	0.92
76_A	79_W	0.547	0.92
346_A	393_L	0.544	0.91
92_E	280_Q	0.543	0.91
170_L	195_F	0.541	0.91
56_S	59_K	0.537	0.91
150_A	153_N	0.536	0.91
300_I	391_V	0.536	0.91
266_C	269_V	0.536	0.91
306_A	389_V	0.535	0.91
149_Q	184_C	0.535	0.91
285_I	288_A	0.533	0.91
20_A	24_S	0.533	0.91
216_N	331_K	0.532	0.91
202_V	246_L	0.531	0.90
284_L	288_A	0.529	0.90
169_E	173_N	0.529	0.90
91_H	293_D	0.529	0.90
229_L	233_C	0.528	0.90
319_S	354_S	0.528	0.90
86_P	339_E	0.527	0.90
371_L	376_T	0.527	0.90
178_G	185_S	0.526	0.90
9_I	104_S	0.526	0.90
346_A	357_T	0.525	0.90
402_I	407_V	0.525	0.90
80_L	192_Y	0.524	0.90
218_F	255_I	0.523	0.90
379_Q	398_Q	0.522	0.90
86_P	336_D	0.521	0.90
230_S	234_A	0.521	0.90
384_L	387_A	0.519	0.89
149_Q	180_M	0.518	0.89
210_M	238_I	0.518	0.89
52_P	57_V	0.517	0.89
32_V	73_P	0.517	0.89
42_I	48_H	0.516	0.89
134_A	154_I	0.516	0.89
123_V	277_Q	0.516	0.89
84_P	269_V	0.515	0.89
216_N	266_C	0.514	0.89
106_A	134_A	0.514	0.89
279_P	283_R	0.513	0.89
107_P	137_R	0.512	0.89
270_D	338_R	0.511	0.89
14_I	338_R	0.510	0.89
105_I	109_L	0.509	0.89
287_T	291_V	0.509	0.89
366_Q	378_A	0.506	0.88
389_V	413_V	0.505	0.88
289_R	293_D	0.505	0.88
117_L	154_I	0.504	0.88
307_V	411_Y	0.504	0.88
8_V	22_F	0.504	0.88
43_N	46_E	0.503	0.88
159_E	338_R	0.503	0.88
324_A	379_Q	0.503	0.88
301_D	304_K	0.501	0.88
317_R	321_L	0.501	0.88
299_V	345_I	0.501	0.88
73_P	108_V	0.501	0.88
96_T	99_E	0.500	0.88

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ojoA	2	0.9381	100	0.263	Contact Map
2y0cA	4	0.9643	100	0.273	Contact Map
3gg2A	3	0.9619	100	0.282	Contact Map
2q3eA	5	0.9571	100	0.291	Contact Map
3g79A	2	0.9619	100	0.293	Contact Map
2o3jA	4	0.9524	100	0.294	Contact Map
4a7pA	2	0.9524	100	0.31	Contact Map
4xr9A	2	0.9714	100	0.312	Contact Map
3vtfA	2	0.9452	100	0.32	Contact Map
1mv8A	2	0.9452	100	0.33	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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