GABD - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

GABD - Succinate-semialdehyde dehydrogenase [NADP(+)] GabD

UniProt:	P25526	Sequences: MKLNDSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCIGL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11329
Length:	482 (453)
Sequences:	36502 (21854)
Seq/√Len:	1026.8

ECOLI - GABD PUUC FEAB BETB ABDH ALDB ALDA ASTD SAD EUTE PUTA PAAZ PROA
BACSU - ALDH4 ROCA ROCA2 ALDH1 ALDH5 IOLA BETB ALDY GABD ALDH3 ALDH2 PROA
HALSA - Q9HMJ6 Q9HQZ2 Q9HRB5 Q9HR91
SULSO - Q97YT9 KGSDH GAPN Q97XS9 Q97XA5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
299_D	398_K	4.981	1.00
243_E	247_K	3.939	1.00
299_D	396_R	3.156	1.00
271_D	308_K	3.101	1.00
302_Y	396_R	2.924	1.00
29_D	41_S	2.810	1.00
359_K	369_Q	2.782	1.00
58_N	225_L	2.779	1.00
266_D	298_Q	2.725	1.00
377_P	380_A	2.668	1.00
334_E	338_A	2.614	1.00
346_D	381_K	2.584	1.00
275_E	312_A	2.564	1.00
191_A	194_E	2.551	1.00
345_A	349_E	2.517	1.00
306_A	394_L	2.476	1.00
266_D	300_G	2.435	1.00
86_H	89_D	2.402	1.00
84_M	117_E	2.375	1.00
29_D	38_K	2.324	1.00
420_A	426_V	2.310	1.00
344_I	368_F	2.226	1.00
58_N	227_R	2.226	1.00
197_I	203_A	2.201	1.00
46_G	49_E	2.187	1.00
341_E	345_A	2.137	1.00
87_Q	110_S	2.129	1.00
88_D	106_K	2.123	1.00
79_W	196_A	2.116	1.00
82_L	198_R	2.079	1.00
400_E	425_R	2.061	1.00
346_D	350_K	2.028	1.00
353_R	375_D	2.024	1.00
411_E	457_A	2.023	1.00
222_S	244_Q	2.022	1.00
218_N	222_S	2.005	1.00
184_Q	333_D	1.982	1.00
145_Q	476_K	1.981	1.00
341_E	360_A	1.976	1.00
310_Q	314_S	1.939	1.00
428_R	432_A	1.926	1.00
331_L	340_V	1.917	1.00
262_F	277_A	1.909	1.00
341_E	368_F	1.903	1.00
89_D	191_A	1.898	1.00
304_R	308_K	1.895	1.00
355_V	374_V	1.873	1.00
75_I	201_V	1.843	1.00
51_R	219_E	1.835	1.00
240_Q	243_E	1.822	1.00
348_L	354_V	1.800	1.00
144_K	470_E	1.798	1.00
267_D	425_R	1.794	1.00
55_D	225_L	1.793	1.00
239_R	457_A	1.788	1.00
86_H	198_R	1.758	1.00
82_L	85_E	1.749	1.00
296_Y	406_Q	1.749	1.00
434_E	456_K	1.725	1.00
383_S	395_F	1.724	1.00
144_K	473_L	1.704	1.00
373_L	382_V	1.696	1.00
400_E	428_R	1.691	1.00
82_L	199_A	1.688	1.00
51_R	55_D	1.687	1.00
378_A	406_Q	1.656	1.00
353_R	374_V	1.650	1.00
298_Q	397_F	1.647	1.00
38_K	41_S	1.645	1.00
313_V	372_I	1.625	1.00
402_D	405_A	1.624	1.00
82_L	195_L	1.621	1.00
310_Q	355_V	1.616	1.00
296_Y	403_V	1.611	1.00
193_A	208_V	1.611	1.00
77_R	117_E	1.602	1.00
93_L	191_A	1.596	1.00
102_L	106_K	1.576	1.00
398_K	402_D	1.576	1.00
302_Y	306_A	1.575	1.00
307_E	311_Q	1.574	1.00
116_I	168_G	1.562	1.00
84_M	113_A	1.561	1.00
277_A	305_F	1.558	1.00
68_T	71_E	1.557	1.00
282_F	313_V	1.556	1.00
212_S	215_A	1.554	1.00
61_L	65_R	1.552	1.00
51_R	223_N	1.532	1.00
381_K	385_E	1.531	1.00
342_E	381_K	1.516	1.00
308_K	311_Q	1.516	1.00
176_T	205_V	1.509	1.00
81_N	85_E	1.507	1.00
334_E	366_N	1.507	1.00
270_L	308_K	1.493	1.00
295_L	392_A	1.489	1.00
78_N	81_N	1.485	1.00
274_V	308_K	1.475	1.00
303_D	396_R	1.468	1.00
27_A	41_S	1.457	1.00
71_E	74_T	1.456	1.00
194_E	198_R	1.451	1.00
77_R	124_K	1.442	1.00
265_F	425_R	1.441	1.00
66_A	432_A	1.440	1.00
36_G	364_G	1.427	1.00
354_V	373_L	1.423	1.00
37_D	364_G	1.419	1.00
87_Q	106_K	1.415	1.00
276_G	419_Y	1.411	1.00
296_Y	397_F	1.409	1.00
92_R	96_L	1.407	1.00
302_Y	374_V	1.405	1.00
401_A	432_A	1.400	1.00
345_A	348_L	1.397	1.00
297_V	305_F	1.396	1.00
67_L	71_E	1.395	1.00
416_A	435_Y	1.394	1.00
312_A	315_K	1.394	1.00
266_D	425_R	1.390	1.00
88_D	92_R	1.388	1.00
80_F	117_E	1.384	1.00
81_N	117_E	1.382	1.00
402_D	406_Q	1.381	1.00
304_R	307_E	1.379	1.00
122_E	125_R	1.379	1.00
277_A	295_L	1.379	1.00
31_T	38_K	1.373	1.00
143_I	431_E	1.368	1.00
116_I	164_T	1.347	1.00
317_H	325_G	1.346	1.00
49_E	52_A	1.338	1.00
86_H	191_A	1.336	1.00
152_A	177_M	1.335	1.00
92_R	322_L	1.328	1.00
340_V	389_G	1.328	1.00
26_E	44_K	1.322	1.00
218_N	244_Q	1.319	1.00
242_M	460_L	1.319	1.00
399_D	402_D	1.312	1.00
343_H	387_T	1.309	1.00
350_K	381_K	1.305	1.00
397_F	406_Q	1.301	1.00
337_V	341_E	1.300	1.00
228_K	253_S	1.280	1.00
303_D	307_E	1.277	1.00
337_V	368_F	1.276	1.00
163_I	179_L	1.275	1.00
95_T	105_A	1.275	1.00
265_F	397_F	1.272	1.00
338_A	342_E	1.268	1.00
32_N	35_N	1.262	1.00
61_L	176_T	1.258	1.00
311_Q	314_S	1.253	1.00
193_A	206_F	1.252	1.00
337_V	360_A	1.251	1.00
222_S	247_K	1.249	1.00
314_S	356_C	1.241	1.00
265_F	429_V	1.238	1.00
306_A	310_Q	1.233	1.00
334_E	337_V	1.230	1.00
54_I	223_N	1.228	1.00
404_I	429_V	1.220	1.00
80_F	84_M	1.211	1.00
47_A	219_E	1.206	1.00
319_G	326_V	1.203	1.00
301_V	304_R	1.198	1.00
298_Q	399_D	1.197	1.00
263_I	403_V	1.196	1.00
467_Y	470_E	1.194	1.00
298_Q	301_V	1.192	1.00
379_N	384_K	1.192	1.00
44_K	212_S	1.192	1.00
196_A	206_F	1.190	1.00
311_Q	315_K	1.181	1.00
141_I	427_F	1.181	1.00
317_H	327_T	1.178	1.00
50_T	216_V	1.175	1.00
183_S	212_S	1.172	1.00
55_D	59_R	1.170	1.00
144_K	475_I	1.170	1.00
218_N	240_Q	1.169	1.00
466_K	470_E	1.163	1.00
183_S	213_A	1.160	1.00
308_K	312_A	1.158	1.00
342_E	346_D	1.155	1.00
54_I	225_L	1.153	1.00
67_L	75_I	1.149	1.00
204_G	207_N	1.147	1.00
95_T	321_G	1.137	1.00
54_I	226_V	1.133	1.00
306_A	374_V	1.132	1.00
430_G	478_M	1.132	1.00
92_R	102_L	1.131	1.00
416_A	438_V	1.130	1.00
309_L	392_A	1.129	1.00
90_L	191_A	1.126	1.00
378_A	409_D	1.124	1.00
305_F	309_L	1.118	1.00
401_A	428_R	1.114	1.00
240_Q	244_Q	1.109	1.00
237_I	240_Q	1.108	1.00
79_W	195_L	1.107	1.00
426_V	440_I	1.106	1.00
78_N	82_L	1.104	1.00
56_A	207_N	1.104	1.00
347_A	373_L	1.094	1.00
147_I	228_K	1.093	1.00
306_A	355_V	1.093	1.00
236_E	240_Q	1.090	1.00
28_I	44_K	1.088	1.00
352_A	373_L	1.083	1.00
32_N	320_D	1.082	1.00
384_K	411_E	1.079	1.00
167_A	206_F	1.078	1.00
453_G	462_R	1.074	1.00
384_K	409_D	1.069	1.00
190_L	210_T	1.069	1.00
467_Y	475_I	1.069	1.00
77_R	121_E	1.068	1.00
129_D	466_K	1.068	1.00
262_F	292_A	1.068	1.00
401_A	405_A	1.066	1.00
79_W	201_V	1.064	1.00
151_A	220_L	1.064	1.00
242_M	252_V	1.058	1.00
40_G	187_F	1.057	1.00
310_Q	356_C	1.057	1.00
79_W	116_I	1.054	1.00
361_H	369_Q	1.052	1.00
152_A	230_S	1.047	1.00
219_E	223_N	1.046	1.00
263_I	429_V	1.046	1.00
314_S	369_Q	1.045	1.00
316_L	328_I	1.042	1.00
350_K	380_A	1.041	1.00
404_I	432_A	1.040	1.00
462_R	474_E	1.038	1.00
44_K	215_A	1.033	1.00
129_D	467_Y	1.032	1.00
167_A	177_M	1.030	1.00
34_A	321_G	1.020	1.00
422_D	425_R	1.018	1.00
151_A	226_V	1.018	1.00
357_G	371_T	1.008	1.00
269_D	421_R	1.004	1.00
63_A	67_L	1.002	1.00
337_V	366_N	0.996	1.00
400_E	429_V	0.995	1.00
263_I	407_A	0.993	1.00
90_L	195_L	0.992	1.00
36_G	366_N	0.990	1.00
47_A	215_A	0.989	1.00
397_F	403_V	0.989	1.00
158_F	288_T	0.987	1.00
62_P	405_A	0.986	1.00
60_A	176_T	0.983	1.00
73_A	124_K	0.981	1.00
239_R	249_I	0.977	1.00
85_E	198_R	0.972	1.00
346_D	349_E	0.971	1.00
194_E	197_I	0.971	1.00
357_G	369_Q	0.969	1.00
86_H	195_L	0.969	1.00
259_N	293_N	0.965	1.00
123_G	172_A	0.965	1.00
269_D	272_K	0.963	1.00
62_P	434_E	0.960	1.00
190_L	208_V	0.959	1.00
58_N	62_P	0.954	1.00
143_I	478_M	0.953	1.00
340_V	391_L	0.952	1.00
320_D	323_D	0.952	1.00
112_A	164_T	0.952	1.00
149_V	176_T	0.951	1.00
455_I	474_E	0.946	1.00
271_D	304_R	0.941	1.00
86_H	194_E	0.940	1.00
91_A	106_K	0.938	1.00
278_L	312_A	0.937	1.00
343_H	346_D	0.935	1.00
272_K	276_G	0.935	1.00
261_P	416_A	0.934	1.00
89_D	92_R	0.934	1.00
376_V	380_A	0.926	1.00
77_R	120_A	0.925	1.00
147_I	251_K	0.924	1.00
405_A	409_D	0.923	1.00
242_M	246_A	0.923	1.00
280_S	292_A	0.923	1.00
417_Y	443_G	0.920	1.00
32_N	96_L	0.918	1.00
47_A	51_R	0.916	1.00
96_L	322_L	0.914	1.00
140_L	450_A	0.913	1.00
342_E	345_A	0.906	1.00
82_L	86_H	0.905	1.00
281_K	293_N	0.902	1.00
303_D	306_A	0.901	1.00
145_Q	431_E	0.901	1.00
227_R	434_E	0.899	1.00
62_P	66_A	0.895	1.00
150_T	228_K	0.888	1.00
98_Q	185_T	0.883	1.00
32_N	37_D	0.883	1.00
69_A	73_A	0.881	1.00
302_Y	394_L	0.880	1.00
265_F	400_E	0.879	1.00
270_L	274_V	0.878	1.00
74_T	78_N	0.878	1.00
262_F	419_Y	0.876	1.00
239_R	243_E	0.876	1.00
73_A	77_R	0.876	1.00
100_K	108_E	0.875	1.00
352_A	380_A	0.875	1.00
149_V	226_V	0.873	1.00
338_A	341_E	0.872	1.00
145_Q	455_I	0.872	1.00
242_M	245_C	0.871	1.00
65_R	434_E	0.869	1.00
340_V	387_T	0.867	1.00
50_T	151_A	0.867	1.00
274_V	309_L	0.866	1.00
31_T	366_N	0.866	1.00
343_H	381_K	0.866	1.00
395_F	406_Q	0.864	1.00
184_Q	335_K	0.864	1.00
80_F	120_A	0.861	1.00
274_V	312_A	0.860	1.00
193_A	197_I	0.859	1.00
265_F	420_A	0.858	1.00
112_A	160_A	0.857	1.00
427_F	431_E	0.856	1.00
52_A	56_A	0.851	1.00
378_A	395_F	0.845	1.00
83_M	112_A	0.844	1.00
348_L	373_L	0.843	1.00
234_S	237_I	0.842	1.00
66_A	431_E	0.839	1.00
450_A	477_Y	0.837	1.00
73_A	120_A	0.836	1.00
416_A	433_L	0.835	1.00
403_V	406_Q	0.834	1.00
229_L	245_C	0.834	1.00
48_D	52_A	0.829	1.00
166_K	463_E	0.828	1.00
60_A	205_V	0.826	1.00
251_K	474_E	0.826	1.00
147_I	474_E	0.823	1.00
28_I	212_S	0.822	1.00
63_A	66_A	0.819	1.00
404_I	408_N	0.818	1.00
190_L	194_E	0.816	1.00
57_A	207_N	0.812	1.00
34_A	367_F	0.812	1.00
173_A	473_L	0.811	1.00
397_F	402_D	0.810	1.00
147_I	175_C	0.810	1.00
56_A	204_G	0.810	1.00
274_V	305_F	0.808	1.00
48_D	51_R	0.806	1.00
273_A	277_A	0.805	1.00
358_G	371_T	0.804	1.00
229_L	241_L	0.802	1.00
347_A	387_T	0.799	1.00
264_V	305_F	0.797	1.00
418_F	429_V	0.797	1.00
45_M	49_E	0.795	1.00
307_E	310_Q	0.794	1.00
179_L	189_A	0.794	1.00
242_M	249_I	0.793	1.00
64_W	205_V	0.791	1.00
423_L	426_V	0.791	1.00
59_R	62_P	0.790	1.00
318_I	361_H	0.789	1.00
52_A	55_D	0.789	1.00
170_A	177_M	0.785	1.00
238_G	256_L	0.785	1.00
163_I	167_A	0.783	1.00
374_V	396_R	0.779	1.00
77_R	81_N	0.775	1.00
169_P	468_G	0.774	1.00
39_L	96_L	0.773	1.00
351_G	380_A	0.767	1.00
98_Q	332_I	0.767	1.00
181_P	210_T	0.765	1.00
221_T	241_L	0.764	1.00
83_M	113_A	0.764	1.00
344_I	391_L	0.760	1.00
340_V	368_F	0.759	1.00
103_A	327_T	0.757	1.00
435_Y	438_V	0.757	1.00
221_T	244_Q	0.756	1.00
76_L	172_A	0.754	1.00
302_Y	375_D	0.754	1.00
70_K	124_K	0.752	1.00
84_M	87_Q	0.752	1.00
164_T	192_L	0.751	1.00
273_A	305_F	0.751	1.00
309_L	372_I	0.751	1.00
95_T	102_L	0.750	1.00
239_R	247_K	0.747	1.00
238_G	254_L	0.746	1.00
45_M	53_A	0.745	1.00
335_K	338_A	0.745	1.00
316_L	327_T	0.743	1.00
235_T	457_A	0.742	1.00
270_L	301_V	0.740	1.00
91_A	102_L	0.739	1.00
245_C	252_V	0.738	1.00
201_V	206_F	0.735	1.00
201_V	205_V	0.733	1.00
96_L	187_F	0.733	1.00
313_V	356_C	0.732	1.00
261_P	407_A	0.731	1.00
260_A	293_N	0.731	1.00
152_A	166_K	0.730	1.00
211_G	216_V	0.728	1.00
102_L	322_L	0.728	1.00
62_P	65_R	0.727	1.00
298_Q	400_E	0.727	1.00
231_F	237_I	0.726	1.00
91_A	95_T	0.726	1.00
160_A	188_S	0.724	1.00
78_N	199_A	0.724	1.00
221_T	229_L	0.722	1.00
274_V	278_L	0.721	1.00
32_N	322_L	0.721	1.00
271_D	312_A	0.720	1.00
84_M	110_S	0.718	1.00
421_R	424_S	0.716	1.00
348_L	359_K	0.715	1.00
310_Q	313_V	0.712	1.00
151_A	229_L	0.711	1.00
106_K	324_N	0.709	1.00
343_H	385_E	0.709	1.00
323_D	326_V	0.707	1.00
278_L	309_L	0.707	1.00
26_E	215_A	0.707	1.00
50_T	219_E	0.707	1.00
219_E	222_S	0.705	1.00
184_Q	332_I	0.702	1.00
88_D	102_L	0.699	1.00
147_I	227_R	0.699	1.00
179_L	206_F	0.696	1.00
57_A	176_T	0.695	1.00
140_L	477_Y	0.694	1.00
339_K	342_E	0.692	1.00
163_I	189_A	0.689	1.00
154_T	163_I	0.687	1.00
64_W	75_I	0.686	1.00
297_V	301_V	0.685	1.00
244_Q	247_K	0.682	1.00
265_F	298_Q	0.681	1.00
31_T	36_G	0.680	1.00
296_Y	378_A	0.679	1.00
183_S	339_K	0.678	1.00
175_C	473_L	0.677	1.00
93_L	187_F	0.677	1.00
60_A	63_A	0.677	1.00
336_A	339_K	0.677	1.00
313_V	316_L	0.677	1.00
50_T	54_I	0.674	1.00
36_G	334_E	0.673	1.00
58_N	61_L	0.672	1.00
243_E	246_A	0.672	1.00
89_D	194_E	0.668	1.00
267_D	420_A	0.666	1.00
378_A	383_S	0.665	1.00
94_M	97_E	0.664	1.00
318_I	328_I	0.664	1.00
81_N	84_M	0.663	1.00
75_I	199_A	0.663	1.00
163_I	192_L	0.661	1.00
423_L	427_F	0.660	1.00
27_A	43_P	0.659	1.00
285_A	328_I	0.658	1.00
337_V	361_H	0.658	1.00
296_Y	383_S	0.657	1.00
295_L	305_F	0.657	1.00
333_D	336_A	0.656	1.00
334_E	360_A	0.656	1.00
278_L	316_L	0.655	1.00
344_I	373_L	0.653	1.00
399_D	405_A	0.653	1.00
65_R	432_A	0.652	1.00
69_A	123_G	0.650	1.00
64_W	171_L	0.650	1.00
406_Q	409_D	0.649	1.00
251_K	471_D	0.648	1.00
320_D	326_V	0.648	1.00
51_R	225_L	0.648	1.00
109_I	113_A	0.647	1.00
272_K	275_E	0.646	1.00
350_K	379_N	0.645	1.00
368_F	371_T	0.644	1.00
65_R	146_P	0.644	1.00
151_A	217_G	0.644	1.00
56_A	203_A	0.644	1.00
178_V	207_N	0.643	1.00
430_G	440_I	0.642	1.00
139_R	427_F	0.641	1.00
264_V	273_A	0.638	1.00
335_K	339_K	0.638	1.00
62_P	432_A	0.638	1.00
270_L	304_R	0.637	1.00
434_E	455_I	0.637	1.00
400_E	404_I	0.635	1.00
470_E	473_L	0.634	1.00
277_A	309_L	0.634	1.00
470_E	475_I	0.633	1.00
196_A	201_V	0.632	1.00
71_E	75_I	0.632	1.00
183_S	240_Q	0.631	1.00
426_V	430_G	0.630	1.00
90_L	160_A	0.629	1.00
43_P	210_T	0.628	1.00
376_V	383_S	0.628	1.00
341_E	344_I	0.627	1.00
126_I	473_L	0.626	1.00
309_L	394_L	0.626	1.00
143_I	476_K	0.626	1.00
75_I	200_G	0.625	1.00
420_A	425_R	0.625	1.00
356_C	372_I	0.624	1.00
45_M	209_V	0.623	1.00
272_K	421_R	0.622	1.00
80_F	113_A	0.621	1.00
140_L	479_C	0.618	1.00
100_K	104_E	0.618	1.00
358_G	369_Q	0.618	1.00
95_T	322_L	0.618	1.00
87_Q	91_A	0.617	1.00
65_R	145_Q	0.617	1.00
373_L	376_V	0.616	1.00
30_V	40_G	0.615	1.00
191_A	195_L	0.612	1.00
253_S	471_D	0.608	1.00
167_A	179_L	0.607	1.00
166_K	230_S	0.607	1.00
69_A	172_A	0.606	1.00
424_S	427_F	0.605	1.00
242_M	254_L	0.605	1.00
141_I	478_M	0.605	1.00
30_V	97_E	0.601	1.00
297_V	302_Y	0.601	1.00
215_A	218_N	0.600	1.00
53_A	209_V	0.600	1.00
94_M	188_S	0.599	1.00
418_F	426_V	0.598	1.00
100_K	158_F	0.597	1.00
47_A	222_S	0.596	1.00
387_T	391_L	0.594	1.00
126_I	469_I	0.592	1.00
42_V	186_P	0.591	1.00
94_M	105_A	0.591	1.00
55_D	58_N	0.590	1.00
354_V	357_G	0.589	1.00
92_R	95_T	0.588	1.00
404_I	428_R	0.587	1.00
160_A	192_L	0.586	1.00
262_F	295_L	0.585	1.00
267_D	421_R	0.585	1.00
331_L	336_A	0.585	1.00
354_V	371_T	0.585	1.00
267_D	422_D	0.584	1.00
424_S	428_R	0.582	1.00
176_T	207_N	0.582	1.00
83_M	116_I	0.582	1.00
318_I	327_T	0.578	1.00
297_V	394_L	0.577	1.00
118_W	122_E	0.575	1.00
376_V	382_V	0.575	1.00
83_M	192_L	0.574	1.00
39_L	187_F	0.574	1.00
83_M	160_A	0.574	1.00
280_S	443_G	0.574	1.00
375_D	396_R	0.574	1.00
150_T	175_C	0.572	1.00
217_G	221_T	0.571	1.00
288_T	291_C	0.570	1.00
82_L	200_G	0.568	1.00
235_T	239_R	0.568	1.00
360_A	369_Q	0.568	1.00
94_M	108_E	0.567	1.00
310_Q	372_I	0.564	1.00
262_F	417_Y	0.562	1.00
281_K	392_A	0.562	1.00
59_R	63_A	0.562	1.00
228_K	471_D	0.561	1.00
211_G	217_G	0.561	1.00
407_A	433_L	0.561	1.00
80_F	116_I	0.560	1.00
270_L	273_A	0.560	1.00
221_T	248_D	0.557	1.00
437_I	446_S	0.557	1.00
271_D	311_Q	0.556	1.00
378_A	405_A	0.554	1.00
404_I	433_L	0.554	1.00
418_F	440_I	0.553	1.00
109_I	160_A	0.552	1.00
341_E	348_L	0.551	1.00
56_A	60_A	0.550	1.00
26_E	46_G	0.549	1.00
382_V	387_T	0.549	1.00
403_V	407_A	0.548	1.00
150_T	177_M	0.547	1.00
344_I	371_T	0.546	1.00
149_V	227_R	0.546	1.00
57_A	178_V	0.545	1.00
270_L	305_F	0.544	1.00
183_S	236_E	0.544	1.00
79_W	82_L	0.544	1.00
91_A	109_I	0.543	1.00
58_N	149_V	0.543	1.00
317_H	323_D	0.543	1.00
434_E	474_E	0.542	1.00
295_L	394_L	0.542	1.00
53_A	207_N	0.541	1.00
400_E	432_A	0.540	1.00
438_V	476_K	0.540	1.00
299_D	302_Y	0.538	1.00
266_D	397_F	0.538	1.00
268_A	273_A	0.538	1.00
359_K	362_E	0.535	1.00
75_I	79_W	0.535	1.00
69_A	127_Y	0.535	1.00
192_L	196_A	0.534	1.00
30_V	186_P	0.534	1.00
439_G	442_T	0.534	1.00
161_A	165_R	0.534	1.00
213_A	218_N	0.533	1.00
63_A	176_T	0.533	1.00
119_F	169_P	0.533	1.00
121_E	124_K	0.532	1.00
350_K	377_P	0.530	1.00
292_A	417_Y	0.530	1.00
173_A	469_I	0.529	1.00
145_Q	434_E	0.528	1.00
70_K	74_T	0.528	1.00
260_A	415_A	0.528	1.00
90_L	109_I	0.526	1.00
197_I	204_G	0.525	1.00
171_L	206_F	0.525	1.00
42_V	187_F	0.524	1.00
339_K	343_H	0.524	1.00
87_Q	113_A	0.523	1.00
274_V	301_V	0.522	1.00
57_A	149_V	0.522	1.00
110_S	113_A	0.522	1.00
236_E	335_K	0.521	1.00
429_V	433_L	0.521	1.00
111_Y	161_A	0.521	1.00
152_A	167_A	0.520	1.00
122_E	466_K	0.519	1.00
98_Q	284_N	0.518	1.00
74_T	77_R	0.518	1.00
378_A	384_K	0.518	1.00
83_M	90_L	0.514	1.00
44_K	183_S	0.514	1.00
78_N	200_G	0.514	1.00
331_L	368_F	0.513	1.00
307_E	314_S	0.512	1.00
53_A	178_V	0.512	1.00
151_A	178_V	0.510	1.00
347_A	381_K	0.509	1.00
282_F	316_L	0.508	1.00
30_V	39_L	0.508	1.00
224_P	411_E	0.507	1.00
252_V	460_L	0.507	1.00
108_E	158_F	0.507	1.00
355_V	375_D	0.507	1.00
348_L	352_A	0.505	1.00
405_A	432_A	0.502	1.00
91_A	105_A	0.502	1.00
171_L	201_V	0.501	1.00
178_V	209_V	0.501	1.00
309_L	313_V	0.500	1.00
106_K	110_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ek1A	5	0.9959	100	0.019	Contact Map
4o5hA	4	1	100	0.019	Contact Map
4pxlA	4	0.9876	100	0.02	Contact Map
4qf6A	4	0.9979	100	0.02	Contact Map
4yweA	5	0.9751	100	0.022	Contact Map
1a4sA	4	0.9959	100	0.023	Contact Map
4wj9A	4	0.9979	100	0.024	Contact Map
4pz2A	4	0.9938	100	0.025	Contact Map
4qtoA	4	0.9959	100	0.026	Contact Map
3ifgA	6	0.9979	100	0.028	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0134 seconds.