TEHB - ECOLI - GREMLIN Contacts

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TEHB - Tellurite methyltransferase

UniProt:	P25397	Sequences: MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11884
Length:	197 (157)
Sequences:	24873 (19090)
Seq/√Len:	1523.5

ECOLI - TEHB UBIG YJHP SMTA TAM UBIE BIOC CMOA YAFE CMOB RLMA CFA
BACSU - YCGJ MENG YXBB YBAJ YODH YRRT YRHH YQEM YDAC YXJB
HALSA - Q9HR81 Q9HND6 Q9HRX3 Q9HR63 Q9HMT2 Q9HQ85 ARSM Q9HSK6
SULSO - Q97X57 Q97WT7 Q97YX4 Q7LXN7 Q97ZU8 Q97WH3 Q97WN4 Q97XD7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
39_C	57_A	2.965	1.00
62_A	84_V	2.806	1.00
33_K	54_D	2.712	1.00
68_V	82_T	2.600	1.00
56_D	96_Y	2.526	1.00
121_Q	163_W	2.429	1.00
58_W	85_V	2.289	1.00
124_T	128_G	2.271	1.00
56_D	83_R	2.151	1.00
97_D	125_K	2.150	1.00
38_G	104_V	2.124	1.00
35_L	96_Y	2.104	1.00
65_I	82_T	2.079	1.00
120_M	130_N	2.020	1.00
99_I	120_M	2.000	1.00
45_S	55_V	1.987	1.00
119_N	122_R	1.894	1.00
65_I	84_V	1.809	1.00
46_L	72_K	1.803	1.00
32_G	98_F	1.800	1.00
33_K	56_D	1.776	1.00
54_D	81_H	1.746	1.00
62_A	66_A	1.733	1.00
37_L	120_M	1.707	1.00
92_F	96_Y	1.695	1.00
99_I	124_T	1.688	1.00
72_K	82_T	1.680	1.00
114_P	118_A	1.639	1.00
56_D	81_H	1.637	1.00
33_K	97_D	1.630	1.00
37_L	87_L	1.621	1.00
119_N	123_C	1.609	1.00
45_S	57_A	1.590	1.00
50_A	75_E	1.577	1.00
34_T	98_F	1.574	1.00
60_K	86_D	1.572	1.00
46_L	71_I	1.568	1.00
59_D	65_I	1.542	1.00
67_N	70_R	1.526	1.00
29_V	32_G	1.513	1.00
124_T	130_N	1.471	1.00
39_C	45_S	1.465	1.00
33_K	125_K	1.451	1.00
34_T	48_L	1.426	1.00
111_K	114_P	1.421	1.00
114_P	159_Y	1.420	1.00
101_S	104_V	1.396	1.00
157_R	161_E	1.371	1.00
104_V	108_L	1.345	1.00
103_V	106_M	1.338	1.00
36_D	39_C	1.291	1.00
87_L	104_V	1.283	1.00
85_V	91_T	1.282	1.00
124_T	163_W	1.276	1.00
65_I	69_E	1.264	1.00
63_M	66_A	1.259	1.00
106_M	134_A	1.245	1.00
33_K	96_Y	1.239	1.00
47_Y	50_A	1.238	1.00
47_Y	51_N	1.236	1.00
117_I	160_Y	1.236	1.00
103_V	107_F	1.234	1.00
108_L	116_L	1.229	1.00
32_G	53_Y	1.223	1.00
33_K	95_Q	1.216	1.00
111_K	159_Y	1.203	1.00
152_K	155_E	1.164	1.00
59_D	64_S	1.159	1.00
72_K	80_L	1.148	1.00
110_A	115_G	1.144	1.00
21_E	24_E	1.128	1.00
39_C	68_V	1.128	1.00
115_G	118_A	1.121	1.00
83_R	92_F	1.112	1.00
61_N	64_S	1.107	1.00
57_A	82_T	1.101	1.00
93_D	122_R	1.090	1.00
91_T	119_N	1.079	1.00
31_P	53_Y	1.076	1.00
87_L	108_L	1.066	1.00
90_L	119_N	1.054	1.00
86_D	89_N	1.047	1.00
99_I	123_C	1.047	1.00
44_N	100_L	1.045	1.00
95_Q	125_K	1.043	1.00
46_L	75_E	1.008	1.00
46_L	50_A	1.006	1.00
107_F	134_A	0.999	1.00
116_L	120_M	0.986	1.00
41_N	64_S	0.972	1.00
92_F	123_C	0.962	1.00
158_R	161_E	0.952	1.00
102_T	133_V	0.940	1.00
103_V	133_V	0.938	1.00
66_A	69_E	0.936	1.00
67_N	71_I	0.929	1.00
72_K	77_L	0.924	1.00
35_L	99_I	0.921	1.00
48_L	100_L	0.913	1.00
115_G	119_N	0.899	1.00
105_L	108_L	0.898	1.00
28_V	32_G	0.896	1.00
13_Y	16_T	0.892	1.00
21_E	25_A	0.889	1.00
98_F	129_Y	0.889	1.00
85_V	90_L	0.876	1.00
57_A	68_V	0.875	1.00
71_I	74_I	0.866	1.00
38_G	101_S	0.859	1.00
153_E	170_E	0.854	1.00
41_N	67_N	0.847	1.00
69_E	73_S	0.846	1.00
44_N	102_T	0.832	1.00
90_L	123_C	0.832	1.00
34_T	53_Y	0.831	1.00
69_E	82_T	0.830	1.00
66_A	70_R	0.829	1.00
145_V	148_P	0.829	1.00
32_G	97_D	0.811	1.00
39_C	59_D	0.810	1.00
49_A	79_N	0.806	1.00
56_D	92_F	0.805	1.00
45_S	80_L	0.804	1.00
45_S	82_T	0.802	1.00
25_A	169_N	0.798	1.00
165_R	168_Y	0.790	1.00
155_E	158_R	0.782	1.00
71_I	75_E	0.780	1.00
50_A	77_L	0.778	1.00
39_C	65_I	0.766	1.00
105_L	117_I	0.765	1.00
89_N	115_G	0.762	1.00
106_M	135_A	0.760	1.00
96_Y	123_C	0.760	1.00
103_V	135_A	0.751	1.00
34_T	100_L	0.744	1.00
104_V	107_F	0.744	1.00
42_G	68_V	0.743	1.00
34_T	55_V	0.728	1.00
23_L	51_N	0.728	1.00
15_L	19_H	0.727	1.00
93_D	123_C	0.719	1.00
44_N	47_Y	0.713	1.00
43_R	47_Y	0.711	1.00
157_R	168_Y	0.708	1.00
137_D	152_K	0.706	1.00
35_L	123_C	0.700	1.00
153_E	157_R	0.689	1.00
46_L	49_A	0.684	1.00
70_R	73_S	0.683	1.00
43_R	71_I	0.679	1.00
63_M	67_N	0.678	1.00
23_L	26_V	0.678	1.00
20_S	47_Y	0.677	1.00
154_G	157_R	0.676	1.00
92_F	95_Q	0.673	1.00
121_Q	162_G	0.669	1.00
37_L	58_W	0.667	1.00
25_A	167_K	0.665	1.00
41_N	71_I	0.662	1.00
102_T	106_M	0.658	1.00
118_A	122_R	0.658	1.00
44_N	106_M	0.653	1.00
88_N	116_L	0.652	1.00
70_R	74_I	0.650	1.00
21_E	169_N	0.648	1.00
37_L	99_I	0.646	1.00
73_S	78_D	0.645	1.00
88_N	108_L	0.640	1.00
95_Q	123_C	0.639	1.00
58_W	90_L	0.636	1.00
105_L	116_L	0.635	1.00
46_L	82_T	0.631	1.00
31_P	52_G	0.629	1.00
60_K	87_L	0.629	1.00
64_S	103_V	0.625	1.00
33_K	94_R	0.624	1.00
17_R	20_S	0.621	1.00
101_S	132_I	0.612	1.00
34_T	52_G	0.610	1.00
35_L	58_W	0.604	1.00
154_G	158_R	0.602	1.00
15_L	18_T	0.601	1.00
33_K	53_Y	0.601	1.00
39_C	82_T	0.590	1.00
105_L	132_I	0.589	1.00
49_A	77_L	0.588	1.00
46_L	77_L	0.588	1.00
62_A	69_E	0.587	1.00
88_N	115_G	0.585	1.00
22_V	131_L	0.584	1.00
46_L	68_V	0.584	1.00
120_M	124_T	0.583	1.00
44_N	48_L	0.579	1.00
16_T	20_S	0.578	1.00
77_L	80_L	0.574	1.00
20_S	24_E	0.573	1.00
130_N	163_W	0.566	1.00
36_D	107_F	0.565	1.00
101_S	108_L	0.565	1.00
140_D	143_C	0.562	1.00
122_R	125_K	0.559	1.00
136_M	170_E	0.554	1.00
101_S	106_M	0.554	1.00
101_S	120_M	0.547	1.00
155_E	159_Y	0.547	1.00
135_A	148_P	0.545	1.00
58_W	83_R	0.545	1.00
64_S	106_M	0.541	1.00
36_D	57_A	0.539	1.00
30_K	52_G	0.538	1.00
130_N	160_Y	0.534	1.00
132_I	160_Y	0.534	1.00
25_A	28_V	0.532	1.00
156_L	160_Y	0.531	1.00
102_T	107_F	0.530	1.00
134_A	156_L	0.529	1.00
69_E	81_H	0.528	1.00
98_F	128_G	0.528	1.00
129_Y	166_V	0.526	1.00
117_I	159_Y	0.524	1.00
42_G	82_T	0.523	1.00
101_S	116_L	0.522	1.00
38_G	60_K	0.520	1.00
69_E	72_K	0.519	1.00
60_K	84_V	0.516	1.00
88_N	110_A	0.515	1.00
59_D	84_V	0.511	1.00
36_D	44_N	0.507	1.00
146_G	149_F	0.506	1.00
73_S	76_N	0.504	1.00
25_A	29_V	0.504	1.00
103_V	134_A	0.503	1.00
89_N	119_N	0.502	1.00
36_D	55_V	0.502	1.00
45_S	49_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2xvmA	1	1	100	0.329	Contact Map
3m70A	1	0.9949	100	0.346	Contact Map
2gb4A	1	0.9848	100	0.396	Contact Map
4kdcA	1	0.9442	100	0.4	Contact Map
4necA	3	0.9949	100	0.405	Contact Map
1y8cA	1	0.9645	100	0.405	Contact Map
2kw5A	1	0.9645	100	0.405	Contact Map
4kdrA	1	0.9492	100	0.415	Contact Map
3ccfA	1	0.9137	99.9	0.417	Contact Map
1wznA	4	0.9391	99.9	0.421	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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