GREMLIN Database
ACRF - Multidrug export protein AcrF
UniProt: P24181 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10267
Length: 1034 (995)
Sequences: 15789 (10064)
Seq/√Len: 319.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
62_T88_V3.9761.00
958_G961_E3.9131.00
244_E247_G3.9131.00
47_A88_V3.8381.00
309_K312_E3.8211.00
247_G263_K3.7851.00
311_A314_Q3.7711.00
914_A1008_G3.5771.00
708_H711_S3.5691.00
590_L624_G3.4641.00
729_E807_H3.4291.00
529_S1019_F3.3051.00
304_K334_Q3.1531.00
425_L433_K3.0781.00
150_T153_D3.0711.00
585_R588_K3.0231.00
248_K263_K3.0121.00
75_L92_L2.9861.00
3_N7_R2.9731.00
280_R594_T2.9291.00
426_P429_E2.9241.00
188_L203_V2.9141.00
834_T842_L2.9101.00
759_N770_L2.8981.00
730_V735_A2.8591.00
531_G964_L2.8561.00
62_T82_S2.8411.00
193_L198_L2.8121.00
58_Q822_P2.8011.00
735_A745_I2.7971.00
731_D805_T2.7911.00
169_L305_A2.7431.00
142_F158_V2.7031.00
690_G693_A2.6931.00
693_A696_Q2.6471.00
165_T309_K2.6471.00
247_G268_V2.6441.00
262_L268_V2.6171.00
76_M93_T2.5901.00
835_S838_D2.5861.00
896_I949_K2.5791.00
251_L265_V2.5531.00
307_K328_D2.5411.00
282_N607_S2.5081.00
345_F349_M2.5041.00
243_P247_G2.4541.00
154_I321_M2.4451.00
704_M707_Q2.4451.00
741_S744_D2.4391.00
697_A854_I2.4141.00
378_G480_L2.4021.00
189_D192_L2.3281.00
587_Q591_D2.3131.00
314_Q322_K2.3021.00
918_F1004_I2.2611.00
76_M95_Q2.2561.00
186_I207_L2.2531.00
731_D734_K2.2511.00
527_T968_R2.2381.00
157_Y321_M2.2371.00
600_N604_N2.2311.00
246_F262_L2.2271.00
702_L706_A2.2171.00
144_S148_G2.1931.00
632_P635_E2.1811.00
382_I476_S2.1711.00
145_D322_K2.1691.00
573_T628_V2.1561.00
696_Q700_Q2.1541.00
957_K965_M2.1461.00
834_T838_D2.1431.00
419_V425_L2.1361.00
204_I772_V2.1301.00
730_V745_I2.1241.00
188_L200_P2.1241.00
642_S645_A2.1191.00
301_D305_A2.1151.00
182_Y270_L2.1121.00
952_M1025_F2.1101.00
419_V437_Q2.0821.00
65_I90_I2.0781.00
783_E786_D2.0641.00
418_R422_E2.0311.00
65_I69_M2.0291.00
951_L955_E2.0151.00
600_N649_R2.0131.00
714_S829_E2.0061.00
728_L804_T2.0031.00
989_A1007_M2.0031.00
740_V790_V1.9911.00
342_K346_E1.9891.00
597_Y650_A1.9891.00
535_G960_V1.9761.00
712_L715_V1.9621.00
799_P802_A1.9601.00
702_L717_P1.9561.00
599_K653_E1.9511.00
187_W269_E1.9491.00
963_T1026_V1.9431.00
577_L581_A1.9431.00
252_R255_S1.9401.00
686_Q701_L1.9331.00
729_E805_T1.9321.00
415_N437_Q1.9311.00
606_E631_K1.9271.00
951_L957_K1.9121.00
145_D284_K1.9001.00
786_D801_S1.8981.00
280_R587_Q1.8901.00
10_I888_A1.8821.00
371_A484_V1.8811.00
526_Y967_V1.8771.00
727_K809_V1.8761.00
57_V61_V1.8461.00
705_A843_M1.8431.00
532_K536_S1.8381.00
429_E433_K1.8311.00
193_L265_V1.8141.00
708_H842_L1.8141.00
242_N245_E1.8001.00
55_Q59_D1.7991.00
546_L550_G1.7851.00
162_V313_L1.7761.00
190_A778_F1.7761.00
537_T1026_V1.7741.00
69_M90_I1.7731.00
699_N702_L1.7721.00
553_V556_L1.7701.00
781_L784_D1.7611.00
62_T80_S1.7561.00
183_A771_Y1.7511.00
521_H524_N1.7511.00
604_N638_G1.7481.00
143_V324_L1.7441.00
450_S479_A1.7381.00
305_A308_A1.7321.00
149_T320_G1.7291.00
8_R892_E1.7191.00
698_R824_M1.7171.00
951_L965_M1.7131.00
702_L715_V1.7061.00
69_M92_L1.7041.00
181_Q273_E1.7001.00
198_L202_D1.6971.00
267_R775_D1.6961.00
740_V803_F1.6941.00
960_V1026_V1.6901.00
92_L107_V1.6791.00
82_S88_V1.6791.00
590_L610_T1.6791.00
521_H525_H1.6741.00
388_Y472_I1.6661.00
697_A700_Q1.6651.00
244_E248_K1.6611.00
7_R428_K1.6601.00
211_N759_N1.6541.00
204_I208_K1.6511.00
734_K737_A1.6491.00
536_S539_R1.6491.00
592_Q595_D1.6441.00
600_N653_E1.6411.00
651_K714_S1.6371.00
920_Q1004_I1.6321.00
415_N418_R1.6301.00
571_F628_V1.6241.00
597_Y605_V1.6191.00
24_A28_L1.6161.00
596_Y653_E1.6111.00
65_I114_A1.6101.00
241_K245_E1.6091.00
844_E866_R1.6071.00
532_K535_G1.6011.00
29_Q384_A1.5951.00
745_I803_F1.5831.00
527_T531_G1.5811.00
20_M377_L1.5771.00
541_L545_A1.5761.00
141_G281_I1.5741.00
884_F897_P1.5721.00
199_T202_D1.5681.00
903_V941_A1.5611.00
307_K325_Y1.5551.00
649_R653_E1.5541.00
735_A740_V1.5531.00
727_K807_H1.5471.00
207_L249_V1.5451.00
304_K308_A1.5421.00
595_D599_K1.5391.00
240_F246_F1.5381.00
775_D778_F1.5331.00
408_D939_K1.5271.00
3_N432_E1.5231.00
552_V556_L1.5231.00
188_L193_L1.5211.00
47_A62_T1.5191.00
297_A302_T1.5181.00
586_T624_G1.5161.00
301_D304_K1.5161.00
386_F476_S1.5081.00
74_N98_T1.5071.00
841_A844_E1.5051.00
679_F828_G1.5041.00
591_D595_D1.5011.00
338_H342_K1.4981.00
418_R969_M1.4971.00
575_I590_L1.4941.00
479_A483_L1.4841.00
416_V493_C1.4821.00
189_D267_R1.4821.00
248_K261_R1.4781.00
26_A381_A1.4741.00
758_V772_V1.4711.00
78_M92_L1.4671.00
842_L845_N1.4671.00
575_I593_V1.4661.00
638_G649_R1.4651.00
419_V422_E1.4631.00
202_D791_R1.4601.00
472_I476_S1.4581.00
838_D841_A1.4521.00
529_S532_K1.4511.00
577_L589_V1.4491.00
695_T699_N1.4411.00
379_T477_A1.4401.00
328_D331_P1.4351.00
142_F162_V1.4351.00
839_A842_L1.4341.00
192_L196_Y1.4321.00
14_V885_L1.4301.00
711_S842_L1.4291.00
307_K311_A1.4291.00
548_V552_V1.4201.00
43_V107_V1.4191.00
593_V654_L1.4191.00
34_Q568_Q1.4171.00
703_G707_Q1.4101.00
202_D205_N1.4031.00
575_I624_G1.4021.00
700_Q703_G1.3991.00
604_N646_V1.3981.00
47_A122_V1.3971.00
790_V803_F1.3971.00
57_V82_S1.3971.00
728_L806_S1.3951.00
757_Y769_K1.3911.00
61_V122_V1.3841.00
581_A585_R1.3841.00
98_T103_A1.3821.00
172_V291_I1.3821.00
688_G854_I1.3821.00
525_H528_N1.3811.00
339_E342_K1.3801.00
412_V435_M1.3801.00
99_D102_I1.3801.00
693_A697_A1.3791.00
612_N624_G1.3791.00
686_Q694_L1.3751.00
317_F323_V1.3751.00
791_R797_M1.3731.00
199_T791_R1.3701.00
541_L1027_V1.3691.00
205_N209_V1.3681.00
864_Q867_L1.3621.00
605_V628_V1.3601.00
571_F647_I1.3591.00
234_I753_L1.3591.00
201_V205_N1.3561.00
841_A845_N1.3561.00
844_E847_A1.3541.00
250_T259_V1.3541.00
66_E817_R1.3501.00
553_V557_R1.3501.00
600_N646_V1.3461.00
591_D594_T1.3441.00
537_T1030_R1.3441.00
740_V793_A1.3391.00
712_L839_A1.3341.00
596_Y600_N1.3341.00
648_H652_M1.3331.00
594_T598_L1.3331.00
838_D842_L1.3261.00
571_F650_A1.3241.00
960_V964_L1.3241.00
261_R264_D1.3231.00
47_A65_I1.3221.00
163_K167_S1.3221.00
45_V92_L1.3221.00
792_S796_E1.3181.00
982_I1007_M1.3181.00
352_F369_T1.3181.00
422_E425_L1.3181.00
595_D598_L1.3171.00
205_N208_K1.3171.00
542_L546_L1.3161.00
937_S1013_A1.3161.00
240_F249_V1.3161.00
950_D954_K1.3151.00
349_M353_L1.3111.00
382_I386_F1.3101.00
170_N305_A1.3101.00
700_Q704_M1.3071.00
279_A288_G1.3061.00
192_L195_K1.3051.00
698_R717_P1.3051.00
53_D56_T1.3041.00
245_E248_K1.2991.00
45_V69_M1.2981.00
631_K635_E1.2961.00
596_Y656_K1.2931.00
952_M1029_R1.2921.00
598_L608_V1.2911.00
425_L429_E1.2891.00
560_S837_G1.2871.00
604_N631_K1.2861.00
712_L828_G1.2851.00
58_Q817_R1.2801.00
4_F11_F1.2791.00
203_V265_V1.2761.00
115_T124_Q1.2751.00
69_M107_V1.2751.00
209_V736_Q1.2741.00
77_Y819_N1.2671.00
22_A381_A1.2671.00
6_I491_A1.2661.00
833_G838_D1.2651.00
202_D252_R1.2641.00
77_Y93_T1.2631.00
550_G554_L1.2621.00
278_I587_Q1.2611.00
959_V963_T1.2601.00
19_L378_G1.2591.00
305_A309_K1.2581.00
374_V488_L1.2561.00
525_H529_S1.2551.00
911_V930_L1.2541.00
143_V322_K1.2531.00
527_T965_M1.2501.00
193_L203_V1.2491.00
63_Q817_R1.2451.00
415_N947_F1.2441.00
69_M78_M1.2441.00
112_Q115_T1.2431.00
982_I1011_V1.2391.00
43_V104_Q1.2381.00
915_A926_F1.2341.00
27_I341_V1.2301.00
588_K592_Q1.2291.00
13_W894_W1.2171.00
577_L586_T1.2161.00
703_G706_A1.2131.00
948_A963_T1.2121.00
142_F323_V1.2111.00
701_L846_L1.2111.00
689_L854_I1.2081.00
961_E965_M1.2071.00
949_K954_K1.2041.00
608_V626_A1.2041.00
58_Q815_L1.2001.00
542_L549_A1.1991.00
156_D768_K1.1961.00
653_E656_K1.1961.00
309_K313_L1.1911.00
549_A553_V1.1881.00
6_I432_E1.1851.00
952_M959_V1.1811.00
725_Q811_G1.1801.00
561_S921_K1.1801.00
685_D818_Y1.1781.00
65_I111_L1.1781.00
247_G267_R1.1771.00
834_T839_A1.1761.00
310_L323_V1.1761.00
26_A384_A1.1731.00
149_T153_D1.1731.00
140_A325_Y1.1731.00
216_A236_A1.1721.00
986_L1007_M1.1711.00
906_L1016_L1.1681.00
339_E999_Q1.1651.00
957_K961_E1.1641.00
68_N114_A1.1631.00
304_K307_K1.1621.00
3_N436_S1.1601.00
57_V88_V1.1601.00
75_L78_M1.1601.00
165_T316_F1.1581.00
784_D787_K1.1581.00
74_N95_Q1.1571.00
687_A823_S1.1561.00
449_L939_K1.1531.00
975_L979_L1.1521.00
528_N531_G1.1501.00
530_V534_L1.1491.00
648_H651_K1.1481.00
533_I1023_V1.1481.00
419_V433_K1.1471.00
187_W267_R1.1451.00
218_Q231_N1.1451.00
590_L612_N1.1441.00
110_K113_L1.1431.00
839_A843_M1.1411.00
527_T964_L1.1381.00
172_V302_T1.1371.00
166_L175_V1.1361.00
157_Y161_N1.1311.00
49_Y52_A1.1301.00
433_K436_S1.1281.00
262_L266_A1.1281.00
206_Q249_V1.1281.00
379_T476_S1.1251.00
834_T843_M1.1251.00
923_D926_F1.1221.00
835_S839_A1.1211.00
859_T863_Y1.1201.00
308_A312_E1.1191.00
701_L826_I1.1181.00
250_T261_R1.1151.00
920_Q1000_N1.1131.00
303_A330_T1.1121.00
20_M24_A1.1121.00
589_V592_Q1.1111.00
370_I492_L1.1101.00
835_S842_L1.1101.00
76_M867_L1.1101.00
45_V65_I1.1091.00
705_A712_L1.1071.00
298_N301_D1.1071.00
818_Y859_T1.1061.00
949_K952_M1.1031.00
311_A315_P1.1001.00
711_S834_T1.0981.00
693_A854_I1.0961.00
16_A488_L1.0951.00
446_A482_V1.0951.00
149_T321_M1.0941.00
165_T313_L1.0931.00
688_G693_A1.0931.00
388_Y394_T1.0911.00
196_Y260_V1.0901.00
145_D148_G1.0891.00
5_F12_A1.0881.00
138_M306_I1.0871.00
140_A323_V1.0861.00
971_L975_L1.0851.00
870_N873_P1.0841.00
773_Q779_R1.0811.00
445_I482_V1.0801.00
11_F889_A1.0791.00
528_N532_K1.0781.00
947_F951_L1.0761.00
524_N528_N1.0761.00
760_D769_K1.0761.00
821_L855_G1.0761.00
533_I540_Y1.0751.00
544_Y1020_F1.0741.00
248_K733_E1.0721.00
592_Q596_Y1.0711.00
597_Y626_A1.0711.00
594_T610_T1.0711.00
415_N419_V1.0691.00
955_E965_M1.0691.00
557_R916_T1.0671.00
732_Q742_L1.0671.00
142_F154_I1.0651.00
78_M820_G1.0641.00
493_C497_L1.0641.00
66_E80_S1.0621.00
175_V289_L1.0621.00
138_M307_K1.0611.00
447_M886_C1.0601.00
708_H845_N1.0591.00
561_S923_D1.0591.00
965_M968_R1.0581.00
891_Y942_I1.0581.00
686_Q697_A1.0581.00
539_R542_L1.0541.00
533_I1019_F1.0521.00
699_N703_G1.0511.00
186_I758_V1.0491.00
155_S180_A1.0471.00
979_L983_L1.0431.00
115_T123_Q1.0431.00
834_T840_M1.0421.00
978_S1014_T1.0421.00
833_G842_L1.0411.00
371_A489_T1.0371.00
792_S795_G1.0371.00
706_A715_V1.0351.00
79_S93_T1.0341.00
750_S756_T1.0341.00
251_L260_V1.0331.00
141_G286_A1.0321.00
81_T91_T1.0321.00
697_A850_L1.0311.00
371_A409_A1.0311.00
185_R773_Q1.0301.00
235_I725_Q1.0291.00
98_T106_Q1.0281.00
982_I1010_M1.0281.00
417_E421_M1.0251.00
308_A311_A1.0251.00
743_S747_Q1.0251.00
314_Q323_V1.0251.00
789_Y797_M1.0231.00
520_D524_N1.0231.00
535_G538_G1.0221.00
785_V806_S1.0221.00
606_E629_S1.0211.00
835_S843_M1.0211.00
30_L380_F1.0181.00
592_Q657_I1.0171.00
444_G886_C1.0171.00
80_S817_R1.0171.00
334_Q338_H1.0161.00
644_E648_H1.0161.00
143_V284_K1.0151.00
68_N113_L1.0151.00
428_K432_E1.0151.00
415_N438_I1.0141.00
108_Q112_Q1.0141.00
145_D320_G1.0131.00
367_I492_L1.0101.00
914_A1004_I1.0091.00
863_Y867_L1.0091.00
187_W775_D1.0081.00
312_E315_P1.0071.00
201_V744_D1.0061.00
261_R733_E1.0061.00
545_A549_A1.0041.00
830_A839_A1.0041.00
836_S839_A1.0041.00
596_Y599_K1.0031.00
711_S831_A1.0021.00
978_S982_I1.0021.00
427_P431_T1.0021.00
382_I480_L0.9991.00
246_F268_V0.9981.00
163_K175_V0.9981.00
597_Y628_V0.9981.00
444_G890_L0.9961.00
549_A552_V0.9951.00
740_V745_I0.9951.00
46_S87_S0.9931.00
216_A749_I0.9921.00
751_T756_T0.9921.00
702_L826_I0.9921.00
45_V90_I0.9911.00
833_G836_S0.9911.00
833_G843_M0.9901.00
303_A307_K0.9871.00
950_D955_E0.9861.00
370_I488_L0.9861.00
947_F969_M0.9851.00
565_E644_E0.9821.00
538_G542_L0.9811.00
787_K801_S0.9801.00
692_D695_T0.9801.00
183_A273_E0.9801.00
144_S149_T0.9801.00
20_M374_V0.9781.00
554_L913_L0.9771.00
538_G1027_V0.9761.00
214_I746_N0.9751.00
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187_W271_G0.5050.93
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169_L306_I0.5040.93
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343_T981_F0.5030.93
411_V442_L0.5030.93
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697_A856_Y0.5020.93
909_V913_L0.5010.93
597_Y604_N0.5010.93
991_S1000_N0.5010.93
868_S872_A0.5000.93
401_A404_L0.5000.93
711_S838_D0.5000.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4k0jA 3 0.9294 100 0.228 Contact Map
4mt1A 3 0.971 100 0.285 Contact Map
3w9iA 3 0.9932 100 0.294 Contact Map
3ne5A 3 0.9632 100 0.297 Contact Map
4dx5A 3 0.9913 100 0.308 Contact Map
3aqpA 1 0.6712 100 0.739 Contact Map
4r86A 1 0.2805 100 0.749 Contact Map
2ew9A 1 0.1431 88 0.98 Contact Map
4n8nA 1 0.0967 82.8 0.982 Contact Map
4u9rA 1 0.1335 65.1 0.984 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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