ACRE - ECOLI - GREMLIN Contacts

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ACRE - Multidrug export protein AcrE

UniProt:	P24180	Sequences: MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10266
Length:	385 (348)
Sequences:	22151 (17665)
Seq/√Len:	946.9

ECOLI - ACRE ACRA MDTE MDTA MACA CUSB EMRK EMRA YDHJ YIAV YIBH AAEA YHII MDTN YBHG
BACSU - YVRP YKNX

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
326_N	332_E	3.288	1.00
77_N	94_Q	3.091	1.00
91_S	174_K	2.968	1.00
337_V	350_E	2.798	1.00
43_I	357_Q	2.699	1.00
321_T	333_A	2.676	1.00
87_Q	180_S	2.571	1.00
334_R	356_D	2.470	1.00
122_H	126_K	2.381	1.00
324_I	334_R	2.362	1.00
60_N	214_D	2.330	1.00
309_Q	346_W	2.314	1.00
260_Q	278_V	2.268	1.00
242_N	256_K	2.262	1.00
46_T	354_S	2.241	1.00
94_Q	174_K	2.189	1.00
306_L	345_K	2.181	1.00
257_G	277_A	2.167	1.00
47_A	345_K	2.139	1.00
129_V	133_G	2.110	1.00
128_Y	137_I	2.088	1.00
108_K	167_R	2.087	1.00
79_N	94_Q	2.080	1.00
70_Q	172_Y	2.051	1.00
87_Q	90_Q	2.050	1.00
46_T	303_D	2.046	1.00
91_S	176_T	2.002	1.00
97_P	101_Q	1.962	1.00
146_I	150_R	1.957	1.00
353_K	356_D	1.926	1.00
253_Y	285_T	1.925	1.00
128_Y	145_A	1.925	1.00
244_E	256_K	1.912	1.00
47_A	306_L	1.912	1.00
339_S	347_L	1.888	1.00
85_D	182_R	1.883	1.00
139_Q	143_D	1.881	1.00
184_G	206_Q	1.876	1.00
215_V	294_A	1.872	1.00
79_N	91_S	1.854	1.00
129_V	146_I	1.848	1.00
330_Q	371_Q	1.848	1.00
332_E	368_P	1.767	1.00
244_E	254_P	1.765	1.00
21_I	24_C	1.760	1.00
132_V	142_Y	1.749	1.00
59_T	213_V	1.742	1.00
214_D	274_T	1.722	1.00
243_V	277_A	1.709	1.00
52_K	295_R	1.709	1.00
338_A	346_W	1.703	1.00
88_A	180_S	1.694	1.00
337_V	349_S	1.681	1.00
157_I	160_K	1.671	1.00
339_S	349_S	1.655	1.00
150_R	153_D	1.655	1.00
212_Y	276_R	1.652	1.00
149_A	153_D	1.634	1.00
125_V	129_V	1.628	1.00
132_V	139_Q	1.614	1.00
122_H	153_D	1.611	1.00
215_V	277_A	1.601	1.00
331_V	359_I	1.601	1.00
75_V	188_V	1.595	1.00
325_V	372_V	1.565	1.00
112_A	115_E	1.565	1.00
21_I	25_N	1.554	1.00
115_E	160_K	1.527	1.00
113_K	155_A	1.524	1.00
20_L	24_C	1.517	1.00
242_N	258_T	1.517	1.00
105_D	108_K	1.504	1.00
120_I	124_T	1.493	1.00
340_Q	347_L	1.492	1.00
75_V	93_Y	1.477	1.00
315_T	333_A	1.464	1.00
164_E	167_R	1.459	1.00
44_V	305_I	1.455	1.00
118_A	149_A	1.446	1.00
44_V	355_G	1.446	1.00
247_M	292_V	1.445	1.00
63_R	207_Q	1.442	1.00
141_E	144_Q	1.442	1.00
322_V	336_V	1.441	1.00
48_P	302_P	1.434	1.00
213_V	292_V	1.431	1.00
81_T	84_S	1.430	1.00
324_I	356_D	1.422	1.00
59_T	211_I	1.420	1.00
54_E	295_R	1.420	1.00
309_Q	344_D	1.410	1.00
122_H	149_A	1.397	1.00
216_T	274_T	1.397	1.00
115_E	119_A	1.396	1.00
125_V	142_Y	1.394	1.00
104_Y	163_V	1.393	1.00
111_L	115_E	1.391	1.00
266_V	273_I	1.381	1.00
244_E	295_R	1.381	1.00
301_Q	347_L	1.380	1.00
66_E	201_E	1.377	1.00
144_Q	148_D	1.369	1.00
142_Y	146_I	1.362	1.00
54_E	293_R	1.360	1.00
40_T	361_S	1.348	1.00
125_V	149_A	1.346	1.00
41_V	374_A	1.336	1.00
119_A	122_H	1.336	1.00
92_L	203_A	1.331	1.00
307_I	358_V	1.330	1.00
207_Q	210_P	1.324	1.00
64_I	204_T	1.324	1.00
111_L	163_V	1.324	1.00
101_Q	105_D	1.320	1.00
76_L	96_D	1.308	1.00
73_G	95_I	1.295	1.00
218_S	221_D	1.293	1.00
41_V	325_V	1.292	1.00
42_H	360_V	1.281	1.00
101_Q	170_L	1.279	1.00
41_V	357_Q	1.277	1.00
48_P	303_D	1.275	1.00
258_T	278_V	1.271	1.00
246_V	295_R	1.269	1.00
304_A	347_L	1.253	1.00
160_K	164_E	1.252	1.00
244_E	297_D	1.252	1.00
38_Q	373_K	1.251	1.00
126_K	129_V	1.240	1.00
118_A	122_H	1.239	1.00
183_I	203_A	1.237	1.00
110_E	113_K	1.235	1.00
210_P	278_V	1.231	1.00
177_A	205_V	1.230	1.00
111_L	156_V	1.221	1.00
314_R	320_A	1.220	1.00
66_E	204_T	1.209	1.00
153_D	157_I	1.203	1.00
305_I	354_S	1.196	1.00
100_Y	173_T	1.195	1.00
125_V	146_I	1.188	1.00
108_K	112_A	1.185	1.00
72_S	196_N	1.178	1.00
185_K	204_T	1.178	1.00
104_Y	108_K	1.175	1.00
245_L	279_F	1.174	1.00
336_V	348_I	1.167	1.00
77_N	190_E	1.163	1.00
113_K	117_A	1.163	1.00
261_F	276_R	1.160	1.00
167_R	171_A	1.160	1.00
91_S	94_Q	1.151	1.00
165_S	169_N	1.151	1.00
93_Y	203_A	1.140	1.00
222_F	273_I	1.137	1.00
80_F	90_Q	1.134	1.00
186_S	203_A	1.127	1.00
103_N	106_S	1.126	1.00
119_A	123_L	1.119	1.00
213_V	294_A	1.115	1.00
124_T	128_Y	1.112	1.00
246_V	254_P	1.106	1.00
156_V	160_K	1.103	1.00
124_T	144_Q	1.101	1.00
214_D	276_R	1.100	1.00
130_P	134_T	1.098	1.00
309_Q	341_A	1.093	1.00
325_V	357_Q	1.087	1.00
259_L	277_A	1.078	1.00
126_K	130_P	1.077	1.00
62_Y	210_P	1.074	1.00
342_I	345_K	1.073	1.00
186_S	189_T	1.069	1.00
140_Q	144_Q	1.066	1.00
320_A	338_A	1.062	1.00
129_V	142_Y	1.055	1.00
106_S	162_T	1.053	1.00
163_V	167_R	1.053	1.00
119_A	150_R	1.050	1.00
70_Q	74_I	1.049	1.00
130_P	133_G	1.048	1.00
263_D	274_T	1.047	1.00
324_I	332_E	1.046	1.00
312_V	346_W	1.042	1.00
341_A	346_W	1.042	1.00
121_A	152_A	1.040	1.00
65_A	179_I	1.040	1.00
221_D	224_R	1.038	1.00
213_V	245_L	1.034	1.00
97_P	173_T	1.030	1.00
75_V	194_V	1.028	1.00
81_T	186_S	1.023	1.00
247_M	250_G	1.013	1.00
326_N	330_Q	1.011	1.00
258_T	280_P	1.008	1.00
76_L	94_Q	1.008	1.00
93_Y	175_V	1.002	1.00
82_E	185_K	1.000	1.00
43_I	355_G	1.000	1.00
312_V	320_A	0.999	1.00
78_R	190_E	0.995	1.00
104_Y	167_R	0.995	1.00
118_A	156_V	0.992	1.00
59_T	286_L	0.990	1.00
106_S	110_E	0.987	1.00
117_A	120_I	0.985	1.00
326_N	334_R	0.983	1.00
281_N	284_H	0.981	1.00
246_V	293_R	0.976	1.00
58_R	271_G	0.975	1.00
143_D	146_I	0.972	1.00
118_A	153_D	0.970	1.00
69_P	175_V	0.968	1.00
210_P	280_P	0.965	1.00
59_T	292_V	0.956	1.00
212_Y	278_V	0.955	1.00
115_E	156_V	0.953	1.00
50_E	297_D	0.949	1.00
148_D	152_A	0.945	1.00
135_K	139_Q	0.935	1.00
329_S	371_Q	0.930	1.00
267_D	270_T	0.928	1.00
146_I	149_A	0.925	1.00
177_A	180_S	0.924	1.00
195_T	200_T	0.924	1.00
127_R	143_D	0.922	1.00
117_A	155_A	0.922	1.00
250_G	255_L	0.920	1.00
128_Y	141_E	0.913	1.00
318_G	335_P	0.906	1.00
194_V	202_L	0.903	1.00
50_E	300_V	0.900	1.00
72_S	195_T	0.889	1.00
62_Y	212_Y	0.884	1.00
80_F	203_A	0.882	1.00
323_L	368_P	0.882	1.00
114_S	159_A	0.878	1.00
103_N	169_N	0.875	1.00
85_D	284_H	0.873	1.00
259_L	275_L	0.871	1.00
339_S	346_W	0.871	1.00
110_E	162_T	0.870	1.00
18_A	22_A	0.869	1.00
326_N	329_S	0.866	1.00
333_A	368_P	0.864	1.00
93_Y	186_S	0.864	1.00
85_D	180_S	0.862	1.00
114_S	117_A	0.862	1.00
307_I	322_V	0.860	1.00
325_V	329_S	0.858	1.00
51_V	224_R	0.858	1.00
52_K	297_D	0.857	1.00
48_P	300_V	0.854	1.00
84_S	90_Q	0.853	1.00
123_L	126_K	0.851	1.00
24_C	27_K	0.846	1.00
301_Q	304_A	0.845	1.00
246_V	252_T	0.838	1.00
114_S	152_A	0.837	1.00
187_T	204_T	0.836	1.00
107_A	159_A	0.835	1.00
93_Y	202_L	0.835	1.00
80_F	186_S	0.834	1.00
71_V	100_Y	0.829	1.00
181_G	205_V	0.825	1.00
297_D	300_V	0.825	1.00
325_V	331_V	0.821	1.00
145_A	148_D	0.821	1.00
19_A	23_G	0.821	1.00
46_T	305_I	0.818	1.00
117_A	151_Q	0.816	1.00
359_I	366_A	0.814	1.00
61_A	288_P	0.813	1.00
187_T	201_E	0.811	1.00
45_K	354_S	0.802	1.00
112_A	157_I	0.801	1.00
155_A	159_A	0.801	1.00
217_Q	275_L	0.800	1.00
94_Q	97_P	0.800	1.00
97_P	174_K	0.799	1.00
19_A	24_C	0.799	1.00
179_I	205_V	0.798	1.00
168_I	171_A	0.797	1.00
80_F	183_I	0.793	1.00
334_R	353_K	0.792	1.00
108_K	163_V	0.792	1.00
82_E	186_S	0.791	1.00
76_L	97_P	0.788	1.00
62_Y	278_V	0.788	1.00
105_D	164_E	0.787	1.00
250_G	253_Y	0.786	1.00
323_L	333_A	0.785	1.00
313_S	321_T	0.785	1.00
117_A	121_A	0.781	1.00
117_A	148_D	0.779	1.00
168_I	172_Y	0.777	1.00
315_T	321_T	0.776	1.00
42_H	308_P	0.775	1.00
226_K	241_S	0.775	1.00
85_D	208_L	0.773	1.00
211_I	288_P	0.773	1.00
227_Q	241_S	0.770	1.00
148_D	151_Q	0.766	1.00
49_L	342_I	0.766	1.00
69_P	194_V	0.766	1.00
120_I	147_A	0.763	1.00
331_V	372_V	0.763	1.00
227_Q	262_S	0.762	1.00
103_N	165_S	0.761	1.00
166_A	169_N	0.757	1.00
78_R	93_Y	0.757	1.00
326_N	356_D	0.755	1.00
331_V	366_A	0.754	1.00
245_L	257_G	0.752	1.00
124_T	140_Q	0.751	1.00
217_Q	225_L	0.750	1.00
98_A	168_I	0.747	1.00
42_H	45_K	0.747	1.00
111_L	160_K	0.746	1.00
323_L	331_V	0.746	1.00
348_I	352_L	0.745	1.00
57_G	292_V	0.744	1.00
67_V	178_P	0.744	1.00
69_P	93_Y	0.742	1.00
120_I	123_L	0.739	1.00
215_V	296_I	0.736	1.00
63_R	190_E	0.736	1.00
322_V	358_V	0.735	1.00
367_R	370_E	0.734	1.00
321_T	335_P	0.734	1.00
255_L	283_Q	0.734	1.00
161_A	164_E	0.732	1.00
63_R	189_T	0.730	1.00
242_N	297_D	0.727	1.00
74_I	193_L	0.726	1.00
109_G	161_A	0.724	1.00
123_L	143_D	0.721	1.00
325_V	359_I	0.719	1.00
37_P	370_E	0.718	1.00
60_N	212_Y	0.715	1.00
248_E	293_R	0.715	1.00
53_T	221_D	0.712	1.00
245_L	294_A	0.710	1.00
182_R	208_L	0.704	1.00
339_S	351_G	0.704	1.00
152_A	155_A	0.700	1.00
147_A	151_Q	0.697	1.00
334_R	351_G	0.695	1.00
75_V	202_L	0.694	1.00
39_V	359_I	0.692	1.00
120_I	144_Q	0.692	1.00
159_A	162_T	0.691	1.00
310_Q	361_S	0.690	1.00
262_S	275_L	0.690	1.00
51_V	299_G	0.687	1.00
104_Y	170_L	0.683	1.00
124_T	148_D	0.682	1.00
151_Q	155_A	0.678	1.00
70_Q	99_T	0.678	1.00
62_Y	207_Q	0.676	1.00
323_L	366_A	0.674	1.00
55_L	215_V	0.674	1.00
166_A	170_L	0.673	1.00
115_E	118_A	0.672	1.00
22_A	26_D	0.672	1.00
357_Q	374_A	0.671	1.00
64_I	206_Q	0.670	1.00
152_A	156_V	0.667	1.00
338_A	348_I	0.664	1.00
307_I	311_G	0.663	1.00
12_S	19_A	0.662	1.00
22_A	25_N	0.661	1.00
162_T	165_S	0.660	1.00
44_V	352_L	0.658	1.00
72_S	193_L	0.655	1.00
247_M	286_L	0.655	1.00
308_P	311_G	0.654	1.00
53_T	298_E	0.650	1.00
103_N	107_A	0.650	1.00
20_L	23_G	0.649	1.00
132_V	137_I	0.644	1.00
44_V	356_D	0.644	1.00
138_S	141_E	0.643	1.00
107_A	110_E	0.643	1.00
158_A	162_T	0.641	1.00
63_R	179_I	0.639	1.00
329_S	374_A	0.633	1.00
117_A	152_A	0.630	1.00
41_V	360_V	0.629	1.00
139_Q	146_I	0.628	1.00
107_A	111_L	0.628	1.00
311_G	360_V	0.627	1.00
17_S	21_I	0.627	1.00
110_E	114_S	0.626	1.00
327_D	357_Q	0.624	1.00
253_Y	283_Q	0.624	1.00
76_L	79_N	0.623	1.00
141_E	145_A	0.623	1.00
42_H	345_K	0.622	1.00
55_L	221_D	0.621	1.00
17_S	20_L	0.620	1.00
36_E	373_K	0.620	1.00
102_A	168_I	0.618	1.00
249_N	252_T	0.618	1.00
45_K	345_K	0.617	1.00
345_K	349_S	0.617	1.00
212_Y	260_Q	0.616	1.00
61_A	64_I	0.616	1.00
13_F	16_I	0.615	1.00
188_V	192_A	0.615	1.00
60_N	64_I	0.614	1.00
132_V	135_K	0.608	1.00
80_F	84_S	0.608	1.00
155_A	158_A	0.607	1.00
86_V	92_L	0.607	1.00
42_H	307_I	0.606	1.00
249_N	253_Y	0.605	1.00
67_V	203_A	0.605	1.00
55_L	217_Q	0.603	1.00
260_Q	276_R	0.601	1.00
65_A	178_P	0.599	1.00
127_R	131_L	0.598	1.00
287_L	290_M	0.597	1.00
305_I	351_G	0.596	1.00
137_I	141_E	0.596	1.00
65_A	205_V	0.596	1.00
273_I	290_M	0.594	1.00
162_T	166_A	0.590	1.00
55_L	296_I	0.589	1.00
209_D	284_H	0.589	1.00
57_G	213_V	0.588	1.00
99_T	169_N	0.587	1.00
66_E	192_A	0.586	1.00
213_V	279_F	0.586	1.00
49_L	340_Q	0.584	1.00
51_V	340_Q	0.583	1.00
171_A	176_T	0.582	1.00
36_E	371_Q	0.580	1.00
97_P	170_L	0.580	1.00
329_S	357_Q	0.578	1.00
307_I	312_V	0.577	1.00
16_I	19_A	0.574	1.00
103_N	166_A	0.573	1.00
123_L	147_A	0.571	1.00
51_V	298_E	0.567	1.00
327_D	330_Q	0.566	1.00
118_A	125_V	0.565	1.00
13_F	17_S	0.565	1.00
209_D	282_P	0.563	1.00
49_L	347_L	0.562	1.00
322_V	351_G	0.559	1.00
55_L	294_A	0.559	1.00
61_A	206_Q	0.559	1.00
324_I	358_V	0.559	1.00
116_A	154_A	0.558	1.00
18_A	24_C	0.558	1.00
13_F	20_L	0.556	1.00
312_V	336_V	0.556	1.00
219_S	291_F	0.556	1.00
277_A	294_A	0.555	1.00
100_Y	166_A	0.555	1.00
137_I	142_Y	0.554	1.00
68_R	201_E	0.554	1.00
58_R	289_G	0.553	1.00
366_A	372_V	0.552	1.00
245_L	277_A	0.550	1.00
49_L	306_L	0.550	1.00
11_P	18_A	0.549	1.00
352_L	356_D	0.549	1.00
313_S	323_L	0.548	1.00
109_G	154_A	0.547	1.00
255_L	286_L	0.547	1.00
69_P	202_L	0.545	1.00
311_G	358_V	0.544	1.00
211_I	281_N	0.541	1.00
147_A	150_R	0.541	1.00
99_T	103_N	0.539	1.00
206_Q	288_P	0.537	1.00
89_G	176_T	0.537	1.00
128_Y	132_V	0.537	1.00
35_G	38_Q	0.536	1.00
17_S	24_C	0.531	1.00
114_S	118_A	0.530	1.00
42_H	46_T	0.530	1.00
116_A	120_I	0.530	1.00
124_T	145_A	0.529	1.00
243_V	296_I	0.527	1.00
46_T	353_K	0.527	1.00
43_I	46_T	0.527	1.00
107_A	166_A	0.524	1.00
306_L	347_L	0.523	1.00
79_N	90_Q	0.522	1.00
266_V	271_G	0.521	1.00
131_L	138_S	0.518	1.00
219_S	249_N	0.516	1.00
211_I	279_F	0.516	1.00
121_A	124_T	0.516	1.00
189_T	192_A	0.516	1.00
206_Q	264_V	0.516	1.00
201_E	204_T	0.515	1.00
215_V	275_L	0.514	1.00
225_L	259_L	0.514	1.00
19_A	22_A	0.512	1.00
45_K	306_L	0.511	1.00
23_G	27_K	0.511	1.00
188_V	194_V	0.511	1.00
312_V	338_A	0.511	1.00
156_V	159_A	0.511	1.00
121_A	148_D	0.510	1.00
110_E	158_A	0.509	1.00
88_A	178_P	0.509	1.00
188_V	202_L	0.508	1.00
227_Q	260_Q	0.507	1.00
78_R	186_S	0.506	1.00
243_V	247_M	0.505	1.00
102_A	161_A	0.504	1.00
196_N	200_T	0.504	1.00
256_K	280_P	0.503	1.00
67_V	179_I	0.503	1.00
59_T	247_M	0.500	1.00
140_Q	143_D	0.500	1.00
170_L	173_T	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vf7A	5	0.6234	100	0.241	Contact Map
3lnnA	6	0.8545	100	0.257	Contact Map
4dk0A	5	0.7896	100	0.261	Contact Map
3ne5B	3	0.8182	100	0.278	Contact Map
3fppA	3	0.6442	100	0.281	Contact Map
4l8jA	2	0.813	100	0.285	Contact Map
4kkuA	1	0.6831	100	0.333	Contact Map
2f1mA	2	0.6104	100	0.4	Contact Map
4tkoB	1	0.6052	100	0.483	Contact Map
2k32A	1	0.2987	99.8	0.707	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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