GREMLIN Database
ACRD - Probable aminoglycoside efflux pump
UniProt: P24177 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10014
Length: 1037 (997)
Sequences: 15806 (10032)
Seq/√Len: 317.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
956_D959_E4.0111.00
244_E247_R4.0041.00
62_T88_A3.9461.00
309_R312_E3.8731.00
311_D314_A3.8521.00
247_R263_G3.8421.00
47_A88_A3.8091.00
913_A1006_G3.5671.00
728_D806_R3.5311.00
590_V624_A3.4581.00
529_G1017_Y3.3721.00
304_E334_K3.1801.00
425_L433_K3.1471.00
150_D153_D3.0671.00
248_D263_G3.0621.00
3_N7_D3.0511.00
426_T429_E3.0461.00
585_Q588_K3.0251.00
531_A962_L2.9761.00
75_L92_L2.9721.00
188_L203_V2.9291.00
280_R594_E2.8801.00
758_N769_V2.8691.00
729_I734_A2.8241.00
62_T82_S2.8201.00
734_A744_I2.8061.00
730_D804_T2.7871.00
169_V305_L2.7781.00
58_E821_S2.7741.00
690_G693_A2.7731.00
193_L198_M2.7451.00
693_A696_A2.7071.00
165_P309_R2.6931.00
142_F158_V2.6861.00
247_R268_V2.6351.00
262_L268_V2.6261.00
895_V948_N2.5881.00
76_M93_S2.5851.00
307_L328_E2.5721.00
282_N607_S2.5521.00
345_L349_A2.5391.00
704_L707_E2.5061.00
740_A743_D2.5011.00
251_L265_V2.4981.00
243_P247_R2.4601.00
154_I321_L2.4571.00
378_G480_L2.4001.00
587_L591_E2.3721.00
314_A322_E2.3691.00
697_A853_F2.3671.00
189_D192_K2.3481.00
527_E966_R2.3101.00
76_M95_K2.2931.00
157_Y321_L2.2781.00
632_D635_E2.2551.00
702_L706_A2.2551.00
144_S148_S2.2481.00
730_D733_K2.2421.00
917_R1002_T2.2351.00
186_I207_I2.2311.00
955_H963_H2.2291.00
382_V476_A2.2211.00
833_V841_I2.2201.00
573_T628_I2.2161.00
246_F262_L2.2151.00
696_A700_Q2.2091.00
301_A305_L2.1541.00
204_T771_V2.1421.00
188_L200_A2.1341.00
419_I425_L2.1291.00
145_T322_E2.1221.00
729_I744_I2.1191.00
182_Y270_M2.1131.00
782_D785_N2.0991.00
950_M953_K2.0861.00
951_N1023_F2.0841.00
419_I437_Q2.0781.00
705_A842_M2.0571.00
187_W269_E2.0501.00
597_Y650_A2.0311.00
535_H958_F2.0181.00
65_I69_M2.0131.00
65_I90_V2.0121.00
987_A1005_M2.0111.00
961_T1024_V2.0051.00
702_L716_H2.0041.00
739_V789_V1.9951.00
252_R255_Q1.9921.00
342_K346_E1.9821.00
728_D804_T1.9781.00
602_K649_R1.9721.00
950_M955_H1.9681.00
727_I803_A1.9661.00
599_T653_A1.9591.00
713_R828_E1.9581.00
577_L581_S1.9561.00
685_D701_L1.9511.00
798_P801_A1.9471.00
711_L714_V1.9371.00
726_Q808_E1.9221.00
785_N800_S1.9221.00
834_S837_T1.9031.00
280_R587_L1.9011.00
708_N841_I1.8891.00
526_Y965_C1.8861.00
415_N437_Q1.8791.00
701_L846_V1.8731.00
521_R524_E1.8711.00
553_F556_L1.8701.00
57_L61_V1.8641.00
429_E433_K1.8571.00
10_I887_A1.8561.00
606_M631_K1.8491.00
371_A484_V1.8361.00
699_N702_L1.8331.00
55_Q59_N1.8281.00
532_K536_R1.8261.00
242_T245_Q1.8261.00
143_V324_K1.7991.00
780_L783_D1.7981.00
149_M320_G1.7981.00
193_L265_V1.7961.00
450_S479_V1.7911.00
537_S1024_V1.7851.00
546_L550_G1.7781.00
305_L308_N1.7731.00
190_P777_Y1.7671.00
841_I844_S1.7531.00
162_I313_L1.7521.00
62_T80_S1.7471.00
843_E847_K1.7461.00
183_S770_Y1.7441.00
702_L714_V1.7401.00
843_E865_R1.7391.00
950_M963_H1.7391.00
244_E248_D1.7361.00
958_F1024_V1.7341.00
698_R823_V1.7251.00
69_M92_L1.7191.00
697_A700_Q1.7171.00
8_R891_E1.7151.00
7_D428_R1.7131.00
739_V802_F1.7121.00
592_Q595_K1.7091.00
521_R525_R1.7051.00
92_L107_V1.6991.00
69_M90_V1.6951.00
267_T774_A1.6931.00
204_T208_E1.6841.00
596_Y653_A1.6801.00
419_I423_E1.6781.00
590_V610_A1.6751.00
388_Y472_I1.6731.00
679_F827_G1.6721.00
24_T28_F1.6701.00
181_Q273_E1.6641.00
211_N758_N1.6641.00
198_M202_D1.6621.00
919_L1002_T1.6601.00
536_R539_R1.6521.00
418_R423_E1.6481.00
733_K736_A1.6471.00
711_L838_A1.6351.00
29_S384_Y1.6351.00
241_Q245_Q1.6311.00
415_N418_R1.6271.00
65_I114_A1.6241.00
527_E531_A1.6231.00
145_T284_K1.6211.00
571_F628_I1.6161.00
744_I802_F1.6121.00
552_V556_L1.6081.00
82_S88_A1.6071.00
651_T713_R1.6021.00
726_Q806_R1.5971.00
532_K535_H1.5961.00
20_C377_M1.5961.00
595_K599_T1.5951.00
541_I545_V1.5931.00
304_E308_N1.5921.00
948_N952_Q1.5861.00
734_A739_V1.5821.00
199_T202_D1.5821.00
649_R653_A1.5811.00
307_L325_V1.5781.00
301_A304_E1.5781.00
597_Y605_I1.5741.00
774_A777_Y1.5671.00
602_K653_A1.5601.00
418_R967_Q1.5561.00
596_Y656_Q1.5541.00
902_V940_A1.5541.00
3_N432_R1.5541.00
141_A281_F1.5531.00
840_D843_E1.5421.00
240_L246_F1.5401.00
74_N98_T1.5371.00
386_F476_A1.5371.00
591_E595_K1.5351.00
338_E342_K1.5321.00
189_D267_T1.5321.00
207_I249_I1.5311.00
575_V590_V1.5281.00
593_I654_F1.5261.00
529_G532_K1.5251.00
188_L193_L1.5251.00
883_F896_P1.5241.00
575_V593_I1.5241.00
408_D938_K1.5151.00
479_V483_L1.5141.00
695_M699_N1.5131.00
248_D261_R1.5081.00
560_T836_G1.5041.00
47_A62_T1.5021.00
26_A381_S1.5011.00
297_A302_T1.5001.00
757_V771_V1.4961.00
416_V493_C1.4941.00
142_F162_I1.4841.00
833_V837_T1.4801.00
586_T624_A1.4781.00
78_M92_L1.4771.00
604_N638_S1.4741.00
791_N795_G1.4721.00
685_D694_L1.4691.00
841_I845_L1.4671.00
115_M124_N1.4651.00
472_I476_A1.4601.00
234_I752_W1.4561.00
710_E841_I1.4531.00
577_L589_V1.4521.00
379_T477_A1.4481.00
704_L845_L1.4451.00
703_A707_E1.4441.00
700_Q703_A1.4381.00
192_K196_F1.4381.00
61_V122_V1.4371.00
99_D102_E1.4341.00
756_Y768_K1.4311.00
638_S649_R1.4271.00
172_V291_V1.4271.00
43_V107_V1.4251.00
307_L311_D1.4231.00
47_A122_V1.4211.00
548_L552_V1.4191.00
571_F647_I1.4161.00
202_D205_D1.4121.00
575_V624_A1.4111.00
205_D209_S1.4111.00
328_E331_S1.4081.00
202_D790_R1.4081.00
339_D342_K1.4071.00
789_V802_F1.4071.00
727_I805_S1.4061.00
648_E652_K1.4061.00
34_Q568_R1.4011.00
604_N646_I1.3991.00
693_A697_A1.3981.00
201_K205_D1.3941.00
14_V884_L1.3931.00
199_T790_R1.3921.00
412_V435_M1.3911.00
840_D844_S1.3901.00
863_Q866_L1.3881.00
688_G853_F1.3871.00
542_V546_L1.3821.00
205_D208_E1.3801.00
98_T103_A1.3791.00
602_K646_I1.3761.00
541_I1025_L1.3751.00
581_S585_Q1.3741.00
591_E594_E1.3741.00
653_A656_Q1.3701.00
525_R528_K1.3661.00
57_L82_S1.3611.00
537_S1028_R1.3551.00
317_F323_Y1.3531.00
47_A65_I1.3491.00
66_E816_R1.3481.00
45_V69_M1.3461.00
958_F962_L1.3461.00
790_R796_M1.3421.00
261_R264_D1.3411.00
605_I628_I1.3411.00
571_F650_A1.3391.00
951_N1027_R1.3391.00
594_E598_F1.3361.00
163_Q167_S1.3351.00
837_T840_D1.3351.00
846_V855_L1.3331.00
349_A353_L1.3331.00
240_L249_I1.3321.00
423_E433_K1.3311.00
192_K195_S1.3311.00
698_R716_H1.3301.00
352_F369_T1.3261.00
595_K598_F1.3251.00
700_Q704_L1.3171.00
596_Y602_K1.3171.00
980_I1005_M1.3161.00
612_V624_A1.3141.00
170_N305_L1.3131.00
604_N631_K1.3091.00
550_G554_L1.3061.00
631_K635_E1.3061.00
53_S56_T1.3051.00
382_V386_F1.3021.00
425_L429_E1.3021.00
209_S735_Q1.3021.00
525_R529_G1.3021.00
305_L309_R1.2941.00
936_S1011_A1.2921.00
45_V92_L1.2911.00
598_F608_V1.2901.00
527_E963_H1.2891.00
69_M107_V1.2881.00
374_V488_L1.2881.00
279_S288_G1.2871.00
143_V322_E1.2861.00
77_Y818_N1.2861.00
549_G553_F1.2851.00
250_T259_E1.2851.00
703_A706_A1.2821.00
19_L378_G1.2821.00
245_Q248_D1.2811.00
58_E816_R1.2761.00
63_Q816_R1.2761.00
22_T381_S1.2761.00
77_Y93_S1.2741.00
980_I1009_I1.2741.00
608_V626_M1.2711.00
112_Q115_M1.2701.00
278_L587_L1.2681.00
711_L827_G1.2671.00
202_D252_R1.2621.00
203_V265_V1.2601.00
145_T148_S1.2591.00
588_K592_Q1.2561.00
739_V792_K1.2551.00
553_F557_R1.2541.00
542_V549_G1.2541.00
947_A961_T1.2491.00
684_Q817_Y1.2461.00
959_E963_H1.2451.00
193_L203_V1.2431.00
13_W893_W1.2401.00
914_T925_F1.2401.00
6_I491_A1.2401.00
957_L961_T1.2391.00
4_F11_F1.2381.00
69_M78_M1.2361.00
165_P316_Y1.2331.00
27_I341_V1.2321.00
43_V104_V1.2291.00
910_A929_L1.2261.00
156_D767_K1.2221.00
415_N946_F1.2211.00
652_K655_N1.2211.00
528_K531_A1.2111.00
590_V612_V1.2101.00
984_L1005_M1.2061.00
419_I433_K1.2051.00
533_I1021_L1.2051.00
216_V236_A1.2041.00
65_I111_L1.2041.00
142_F323_Y1.2011.00
955_H959_E1.2001.00
724_Q810_G1.1981.00
310_L323_Y1.1951.00
951_N957_L1.1931.00
6_I432_R1.1921.00
247_R267_T1.1911.00
524_E528_K1.1911.00
3_N436_G1.1901.00
710_E833_V1.1861.00
26_A384_Y1.1851.00
577_L586_T1.1851.00
309_R313_L1.1841.00
783_D786_L1.1831.00
218_Q231_N1.1811.00
75_L78_M1.1801.00
187_W267_T1.1781.00
149_M153_D1.1771.00
74_N95_K1.1741.00
304_E307_L1.1711.00
140_I325_V1.1701.00
433_K436_G1.1681.00
685_D697_A1.1671.00
58_E814_L1.1661.00
308_N312_E1.1651.00
708_N845_L1.1641.00
57_L88_A1.1631.00
68_N114_A1.1631.00
157_Y161_N1.1611.00
527_E962_L1.1601.00
172_V302_T1.1571.00
973_L977_L1.1571.00
689_A853_F1.1561.00
339_D997_Q1.1551.00
166_L175_I1.1521.00
919_L998_H1.1491.00
701_L825_I1.1481.00
250_T261_R1.1461.00
858_T862_Y1.1461.00
140_I323_Y1.1451.00
648_E651_T1.1431.00
110_Q113_S1.1431.00
388_Y394_T1.1401.00
530_V534_L1.1391.00
687_A822_A1.1361.00
206_A249_I1.1351.00
705_A711_L1.1341.00
311_D315_Q1.1321.00
379_T476_A1.1321.00
138_L306_V1.1311.00
948_N951_N1.1311.00
592_Q596_Y1.1301.00
149_M321_L1.1281.00
49_Y52_A1.1251.00
589_V592_Q1.1241.00
196_F260_V1.1231.00
446_A482_V1.1221.00
262_L266_A1.1211.00
76_M866_L1.1191.00
820_Y854_G1.1191.00
370_I492_L1.1191.00
693_A853_F1.1171.00
817_Y858_T1.1171.00
449_L938_K1.1141.00
708_N844_S1.1111.00
592_Q657_I1.1111.00
561_S920_E1.1101.00
20_C24_T1.1081.00
303_A330_T1.1061.00
526_Y530_V1.1051.00
515_F519_F1.1031.00
838_A841_I1.1031.00
298_N301_A1.1031.00
869_A872_P1.1021.00
749_Q755_S1.1001.00
557_R915_W1.1001.00
165_P313_L1.0991.00
592_Q659_E1.0961.00
905_L1014_L1.0941.00
772_Q778_R1.0891.00
16_A488_L1.0871.00
528_K532_K1.0851.00
759_D768_K1.0841.00
447_M885_C1.0831.00
248_D732_R1.0821.00
11_F888_A1.0811.00
963_H966_R1.0801.00
493_C497_L1.0801.00
141_A286_A1.0801.00
922_D925_F1.0781.00
445_I482_V1.0771.00
946_F950_M1.0761.00
142_F154_I1.0741.00
5_F12_A1.0731.00
549_G552_V1.0711.00
415_N419_I1.0701.00
742_D746_D1.0701.00
699_N703_A1.0681.00
697_A849_L1.0661.00
688_G693_A1.0651.00
334_K338_E1.0651.00
596_Y599_T1.0651.00
594_E610_A1.0641.00
731_Q741_I1.0641.00
606_M629_R1.0631.00
81_Q91_T1.0621.00
155_A180_S1.0571.00
115_M123_Q1.0561.00
138_L307_L1.0541.00
561_S922_D1.0521.00
175_I289_L1.0511.00
66_E80_S1.0491.00
977_L981_F1.0481.00
596_Y657_I1.0481.00
235_N724_Q1.0481.00
953_K963_H1.0471.00
185_R772_Q1.0461.00
78_M819_G1.0461.00
308_N311_D1.0451.00
788_Y796_M1.0451.00
554_L912_L1.0441.00
533_I1017_Y1.0431.00
545_V549_G1.0431.00
312_E315_Q1.0421.00
68_N113_S1.0401.00
842_M857_W1.0401.00
706_A714_V1.0381.00
79_S93_S1.0381.00
969_L973_L1.0371.00
45_V65_I1.0351.00
597_Y626_M1.0331.00
890_Y941_I1.0331.00
314_A323_Y1.0321.00
371_A489_T1.0311.00
913_A1002_T1.0261.00
261_R732_R1.0261.00
80_S816_R1.0251.00
682_E824_E1.0221.00
98_T106_Q1.0221.00
862_Y866_L1.0201.00
588_K591_E1.0191.00
980_I1008_M1.0191.00
201_K743_D1.0171.00
638_S645_A1.0171.00
108_Q112_Q1.0171.00
539_R542_V1.0161.00
786_L800_S1.0141.00
371_A409_A1.0141.00
602_K650_A1.0131.00
976_S980_I1.0121.00
187_W774_A1.0111.00
829_A838_A1.0111.00
428_R432_R1.0101.00
251_L260_V1.0091.00
444_G885_C1.0071.00
589_V657_I1.0061.00
424_G430_A1.0051.00
976_S1012_T1.0051.00
710_E830_A1.0051.00
46_T87_Q1.0041.00
593_I657_I1.0031.00
30_L380_F1.0031.00
186_I757_V1.0021.00
429_E432_R1.0011.00
367_I492_L1.0011.00
246_F268_V1.0001.00
946_F967_Q1.0001.00
912_L916_M0.9991.00
949_E953_K0.9991.00
692_D695_M0.9981.00
750_T755_S0.9961.00
638_S646_I0.9961.00
216_V748_L0.9961.00
143_V284_K0.9951.00
370_I488_L0.9951.00
784_I805_S0.9941.00
20_C374_V0.9921.00
585_Q659_E0.9921.00
546_L549_G0.9911.00
415_N438_I0.9911.00
702_L825_I0.9891.00
575_V662_V0.9881.00
427_P431_T0.9871.00
949_E952_Q0.9871.00
538_L542_V0.9861.00
102_E106_Q0.9861.00
645_A649_R0.9841.00
214_I745_N0.9831.00
791_N794_G0.9831.00
981_F984_L0.9811.00
533_I540_W0.9791.00
520_N524_E0.9781.00
544_Y1018_F0.9771.00
80_S90_V0.9771.00
444_G889_L0.9761.00
683_L705_A0.9761.00
303_A307_L0.9761.00
725_L781_P0.9731.00
382_V480_L0.9721.00
144_S320_G0.9721.00
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411_V442_L0.5030.93
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343_T979_F0.5020.93
314_A318_P0.5020.93
745_N748_L0.5010.93
913_A1010_S0.5010.93
177_A289_L0.5000.92
550_G556_L0.5000.92
691_H718_G0.5000.92
105_Q108_Q0.5000.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4k0jA 3 0.9277 100 0.21 Contact Map
4mt1A 3 0.9701 100 0.27 Contact Map
3w9iA 3 0.9884 100 0.278 Contact Map
3ne5A 3 0.9595 100 0.28 Contact Map
4dx5A 3 0.9952 100 0.294 Contact Map
3aqpA 1 0.6779 100 0.724 Contact Map
4r86A 1 0.2797 100 0.748 Contact Map
2ew9A 1 0.1427 85.8 0.981 Contact Map
4n8nA 1 0.0964 79.3 0.982 Contact Map
4q2lA 1 0.0617 74.1 0.983 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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