HEMH - ECOLI - GREMLIN Contacts

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HEMH - Ferrochelatase

UniProt:	P23871	Sequences: MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLLWWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPEMPVALGMSYGSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIRDYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTRELASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLETLEEIAEQNREVFLGAGGKKYEYIPALNATPEHIEMMANLVAAYR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10431
Length:	320 (306)
Sequences:	3136 (1852)
Seq/√Len:	105.9

ECOLI - HEMH
BACSU - HEMH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
170_N	221_A	3.775	1.00
90_R	310_E	3.516	1.00
193_Y	215_T	3.388	1.00
80_S	98_L	3.131	1.00
198_Q	202_D	3.045	1.00
82_Q	304_A	3.022	1.00
97_A	113_E	2.950	1.00
188_L	230_M	2.948	1.00
241_P	244_M	2.846	1.00
46_W	50_R	2.754	1.00
285_R	289_L	2.705	1.00
86_A	306_P	2.687	1.00
17_D	104_S	2.517	1.00
161_D	210_R	2.481	1.00
198_Q	241_P	2.422	1.00
142_E	145_R	2.421	1.00
174_N	307_E	2.283	1.00
251_L	262_I	2.249	1.00
253_M	257_K	2.214	1.00
260_G	294_K	2.147	1.00
90_R	313_A	2.142	1.00
18_A	23_A	2.135	1.00
11_A	139_V	2.125	1.00
178_A	305_T	2.093	1.00
83_Q	309_I	2.044	1.00
112_D	116_A	2.042	1.00
29_K	50_R	2.037	1.00
219_A	229_V	2.015	1.00
97_A	117_E	1.982	1.00
97_A	114_L	1.962	1.00
201_A	208_P	1.917	1.00
199_R	240_E	1.914	1.00
266_C	280_I	1.889	1.00
164_D	213_T	1.877	1.00
121_H	155_G	1.793	1.00
167_D	314_N	1.791	1.00
42_R	46_W	1.791	1.00
177_R	221_A	1.790	1.00
215_T	231_M	1.758	1.00
216_R	220_S	1.752	1.00
225_A	228_K	1.721	1.00
86_A	309_I	1.711	1.00
232_T	247_T	1.708	1.00
213_T	217_E	1.698	1.00
191_L	218_L	1.689	1.00
250_T	253_M	1.666	1.00
101_S	138_A	1.663	1.00
176_V	265_M	1.658	1.00
104_S	109_S	1.625	1.00
212_R	233_F	1.623	1.00
6_T	121_H	1.617	1.00
95_P	117_E	1.610	1.00
209_Q	213_T	1.599	1.00
73_G	78_V	1.589	1.00
124_V	143_L	1.578	1.00
87_L	309_I	1.536	1.00
77_M	81_R	1.527	1.00
208_P	212_R	1.526	1.00
249_E	252_K	1.525	1.00
191_L	229_V	1.511	1.00
213_T	216_R	1.508	1.00
145_R	148_A	1.489	1.00
72_G	82_Q	1.480	1.00
162_Y	270_A	1.463	1.00
193_Y	231_M	1.435	1.00
191_L	265_M	1.434	1.00
33_S	46_W	1.433	1.00
113_E	117_E	1.429	1.00
169_I	221_A	1.424	1.00
230_M	250_T	1.418	1.00
55_P	58_S	1.417	1.00
168_Y	172_L	1.405	1.00
15_T	77_M	1.385	1.00
172_L	218_L	1.374	1.00
281_A	298_Y	1.374	1.00
86_A	304_A	1.369	1.00
99_G	110_A	1.353	1.00
79_Y	271_A	1.347	0.99
251_L	284_N	1.346	0.99
166_H	221_A	1.339	0.99
24_V	61_V	1.334	0.99
196_I	200_Y	1.334	0.99
208_P	233_F	1.319	0.99
78_V	82_Q	1.314	0.99
215_T	229_V	1.305	0.99
114_L	122_I	1.302	0.99
175_S	305_T	1.301	0.99
110_A	113_E	1.300	0.99
17_D	26_R	1.287	0.99
140_W	158_F	1.280	0.99
30_Q	142_E	1.277	0.99
110_A	114_L	1.271	0.99
7_G	119_V	1.268	0.99
88_A	92_P	1.252	0.99
7_G	114_L	1.243	0.99
174_N	177_R	1.242	0.99
97_A	110_A	1.241	0.99
85_Q	89_Q	1.241	0.99
248_D	287_V	1.238	0.99
232_T	250_T	1.236	0.99
196_I	201_A	1.233	0.99
286_E	289_L	1.232	0.99
165_N	315_L	1.223	0.99
191_L	219_A	1.214	0.99
17_D	23_A	1.212	0.99
72_G	78_V	1.208	0.99
169_I	217_E	1.201	0.99
179_S	297_E	1.200	0.99
173_A	221_A	1.199	0.99
180_F	263_Q	1.197	0.99
35_R	42_R	1.195	0.99
263_Q	297_E	1.193	0.99
87_L	313_A	1.188	0.99
84_Q	88_A	1.185	0.99
236_R	246_Y	1.184	0.99
7_G	110_A	1.183	0.99
52_V	56_L	1.180	0.99
173_A	177_R	1.178	0.99
163_A	210_R	1.176	0.99
217_E	220_S	1.171	0.99
170_N	174_N	1.168	0.99
285_R	296_Y	1.156	0.98
125_L	312_M	1.151	0.98
188_L	259_V	1.150	0.98
185_E	228_K	1.143	0.98
179_S	182_K	1.141	0.98
172_L	302_L	1.137	0.98
270_A	308_H	1.136	0.98
313_A	317_A	1.134	0.98
252_K	287_V	1.132	0.98
311_M	315_L	1.131	0.98
114_L	119_V	1.126	0.98
272_D	303_N	1.126	0.98
79_Y	304_A	1.125	0.98
201_A	209_Q	1.125	0.98
48_L	52_V	1.121	0.98
84_Q	98_L	1.107	0.98
85_Q	88_A	1.100	0.98
63_K	66_A	1.092	0.98
21_P	24_V	1.085	0.98
277_L	281_A	1.085	0.98
175_S	300_P	1.083	0.98
56_L	60_R	1.081	0.98
22_E	26_R	1.076	0.98
121_H	157_S	1.073	0.97
224_M	228_K	1.073	0.97
40_T	44_L	1.057	0.97
215_T	219_A	1.055	0.97
81_R	85_Q	1.054	0.97
39_D	151_R	1.042	0.97
192_S	234_Q	1.039	0.97
29_K	33_S	1.039	0.97
119_V	122_I	1.035	0.97
252_K	290_G	1.032	0.97
140_W	144_A	1.026	0.97
162_Y	308_H	1.024	0.97
176_V	189_L	1.023	0.97
112_D	146_I	1.023	0.97
163_A	217_E	1.020	0.97
284_N	287_V	1.018	0.97
86_A	89_Q	1.012	0.96
33_S	50_R	1.010	0.96
87_L	312_M	1.009	0.96
165_N	314_N	1.008	0.96
59_P	63_K	1.008	0.96
286_E	290_G	1.006	0.96
77_M	98_L	1.002	0.96
188_L	257_K	1.000	0.96
261_H	294_K	0.996	0.96
264_V	296_Y	0.995	0.96
190_L	262_I	0.979	0.96
167_D	170_N	0.978	0.96
187_D	260_G	0.977	0.96
125_L	159_I	0.970	0.95
54_L	58_S	0.967	0.95
266_C	298_Y	0.966	0.95
190_L	230_M	0.966	0.95
173_A	218_L	0.963	0.95
187_D	263_Q	0.963	0.95
107_L	139_V	0.962	0.95
283_Q	287_V	0.960	0.95
244_M	249_E	0.959	0.95
123_V	316_V	0.957	0.95
167_D	310_E	0.952	0.95
134_S	196_I	0.950	0.95
39_D	199_R	0.947	0.95
172_L	265_M	0.936	0.94
199_R	203_E	0.935	0.94
164_D	217_E	0.929	0.94
8_I	316_V	0.924	0.94
130_Q	211_C	0.919	0.94
114_L	117_E	0.911	0.94
45_W	49_L	0.910	0.94
186_P	260_G	0.909	0.94
171_A	302_L	0.906	0.93
187_D	261_H	0.903	0.93
176_V	218_L	0.900	0.93
81_R	98_L	0.896	0.93
107_L	142_E	0.893	0.93
132_S	200_Y	0.892	0.93
67_S	282_E	0.892	0.93
189_L	265_M	0.891	0.93
288_F	293_G	0.884	0.93
123_V	159_I	0.884	0.93
7_G	97_A	0.882	0.92
252_K	256_E	0.882	0.92
251_L	291_A	0.881	0.92
112_D	115_L	0.879	0.92
186_P	261_H	0.875	0.92
281_A	285_R	0.873	0.92
43_L	47_P	0.872	0.92
91_L	313_A	0.866	0.92
180_F	185_E	0.864	0.92
83_Q	312_M	0.860	0.92
170_N	307_E	0.851	0.91
167_D	307_E	0.846	0.91
115_L	150_K	0.846	0.91
52_V	55_P	0.845	0.91
124_V	158_F	0.845	0.91
146_I	150_K	0.843	0.91
67_S	278_E	0.842	0.91
18_A	22_E	0.841	0.91
191_L	215_T	0.841	0.91
45_W	55_P	0.841	0.91
280_I	296_Y	0.837	0.90
6_T	123_V	0.837	0.90
123_V	157_S	0.826	0.90
172_L	176_V	0.824	0.90
21_P	59_P	0.824	0.90
79_Y	303_N	0.823	0.90
172_L	175_S	0.818	0.89
48_L	53_I	0.817	0.89
18_A	21_P	0.815	0.89
142_E	146_I	0.814	0.89
175_S	178_A	0.810	0.89
79_Y	82_Q	0.804	0.89
172_L	214_T	0.802	0.88
48_L	58_S	0.802	0.88
127_L	270_A	0.801	0.88
182_K	297_E	0.800	0.88
108_E	149_R	0.800	0.88
177_R	181_A	0.797	0.88
169_I	214_T	0.794	0.88
255_G	291_A	0.792	0.88
56_L	59_P	0.788	0.88
25_K	58_S	0.788	0.88
255_G	259_V	0.787	0.87
255_G	293_G	0.787	0.87
144_A	158_F	0.785	0.87
82_Q	85_Q	0.784	0.87
167_D	311_M	0.783	0.87
7_G	99_G	0.783	0.87
252_K	291_A	0.782	0.87
9_L	110_A	0.781	0.87
186_P	263_Q	0.780	0.87
214_T	218_L	0.780	0.87
29_K	46_W	0.778	0.87
193_Y	211_C	0.775	0.87
57_R	238_G	0.774	0.87
36_R	141_D	0.772	0.86
190_L	232_T	0.771	0.86
111_V	115_L	0.765	0.86
251_L	296_Y	0.764	0.86
39_D	133_C	0.761	0.86
209_Q	212_R	0.759	0.86
108_E	146_I	0.759	0.86
101_S	142_E	0.757	0.85
255_G	260_G	0.754	0.85
264_V	280_I	0.752	0.85
125_L	316_V	0.749	0.85
179_S	300_P	0.749	0.85
183_H	187_D	0.749	0.85
11_A	107_L	0.747	0.85
209_Q	216_R	0.745	0.84
255_G	258_G	0.741	0.84
21_P	62_A	0.741	0.84
212_R	231_M	0.739	0.84
55_P	59_P	0.739	0.84
178_A	182_K	0.735	0.84
134_S	200_Y	0.729	0.83
255_G	294_K	0.728	0.83
42_R	50_R	0.727	0.83
82_Q	86_A	0.727	0.83
284_N	301_A	0.723	0.83
137_G	141_D	0.721	0.82
155_G	160_R	0.720	0.82
111_V	146_I	0.720	0.82
122_I	154_P	0.718	0.82
30_Q	103_G	0.717	0.82
38_V	200_Y	0.716	0.82
112_D	150_K	0.715	0.82
262_I	293_G	0.712	0.82
146_I	149_R	0.707	0.81
308_H	311_M	0.705	0.81
287_V	290_G	0.704	0.81
88_A	95_P	0.697	0.80
30_Q	106_S	0.696	0.80
250_T	254_L	0.693	0.80
80_S	84_Q	0.689	0.80
179_S	183_H	0.680	0.79
27_Y	31_F	0.680	0.79
83_Q	91_L	0.678	0.78
178_A	300_P	0.677	0.78
133_C	137_G	0.677	0.78
188_L	228_K	0.674	0.78
281_A	284_N	0.673	0.78
180_F	189_L	0.671	0.78
111_V	122_I	0.671	0.78
187_D	259_V	0.669	0.78
9_L	99_G	0.668	0.77
25_K	55_P	0.668	0.77
174_N	178_A	0.667	0.77
89_Q	116_A	0.666	0.77
313_A	316_V	0.664	0.77
169_I	173_A	0.662	0.77
95_P	99_G	0.660	0.77
64_L	278_E	0.659	0.76
50_R	55_P	0.657	0.76
106_S	109_S	0.657	0.76
21_P	26_R	0.655	0.76
284_N	296_Y	0.655	0.76
169_I	218_L	0.654	0.76
84_Q	96_V	0.653	0.76
163_A	213_T	0.652	0.76
190_L	250_T	0.651	0.76
272_D	301_A	0.649	0.75
310_E	314_N	0.647	0.75
43_L	46_W	0.647	0.75
31_F	273_C	0.645	0.75
309_I	312_M	0.645	0.75
115_L	152_S	0.644	0.75
27_Y	61_V	0.643	0.75
109_S	112_D	0.642	0.75
201_A	216_R	0.638	0.74
40_T	43_L	0.638	0.74
250_T	257_K	0.637	0.74
111_V	150_K	0.637	0.74
188_L	262_I	0.634	0.74
248_D	284_N	0.634	0.74
175_S	265_M	0.634	0.74
217_E	221_A	0.634	0.74
11_A	99_G	0.632	0.73
282_E	286_E	0.631	0.73
308_H	312_M	0.630	0.73
15_T	74_S	0.629	0.73
183_H	297_E	0.629	0.73
180_F	186_P	0.628	0.73
29_K	55_P	0.626	0.73
27_Y	30_Q	0.626	0.73
53_I	57_R	0.624	0.73
263_Q	299_I	0.623	0.72
98_L	110_A	0.623	0.72
68_V	278_E	0.622	0.72
165_N	311_M	0.621	0.72
124_V	156_I	0.619	0.72
130_Q	135_T	0.618	0.72
99_G	139_V	0.617	0.72
90_R	306_P	0.615	0.71
60_R	64_L	0.615	0.71
47_P	50_R	0.613	0.71
208_P	243_L	0.613	0.71
180_F	183_H	0.612	0.71
287_V	291_A	0.611	0.71
183_H	263_Q	0.610	0.71
83_Q	271_A	0.610	0.71
36_R	137_G	0.609	0.71
6_T	94_M	0.608	0.71
9_L	107_L	0.606	0.70
178_A	307_E	0.605	0.70
35_R	46_W	0.605	0.70
278_E	282_E	0.604	0.70
34_D	102_Y	0.604	0.70
190_L	247_T	0.603	0.70
195_G	244_M	0.602	0.70
40_T	239_R	0.601	0.70
178_A	181_A	0.601	0.70
171_A	311_M	0.599	0.69
177_R	222_L	0.599	0.69
41_S	46_W	0.598	0.69
111_V	143_L	0.596	0.69
310_E	313_A	0.595	0.69
120_D	155_G	0.594	0.69
63_K	283_Q	0.593	0.69
256_E	260_G	0.592	0.69
64_L	274_L	0.590	0.68
253_M	256_E	0.590	0.68
139_V	142_E	0.588	0.68
200_Y	240_E	0.588	0.68
201_A	213_T	0.585	0.68
91_L	94_M	0.585	0.68
261_H	297_E	0.584	0.68
175_S	299_I	0.583	0.67
24_V	62_A	0.582	0.67
11_A	124_V	0.580	0.67
232_T	262_I	0.578	0.67
10_L	87_L	0.578	0.67
127_L	271_A	0.576	0.66
28_L	57_R	0.574	0.66
9_L	111_V	0.572	0.66
26_R	104_S	0.571	0.66
88_A	96_V	0.570	0.66
90_R	309_I	0.570	0.66
115_L	147_L	0.570	0.66
113_E	116_A	0.568	0.65
13_L	128_Y	0.567	0.65
87_L	316_V	0.566	0.65
224_M	229_V	0.564	0.65
195_G	246_Y	0.564	0.65
18_A	26_R	0.564	0.65
138_A	153_I	0.561	0.64
166_H	170_N	0.561	0.64
62_A	66_A	0.559	0.64
276_T	279_E	0.554	0.63
212_R	216_R	0.554	0.63
188_L	254_L	0.550	0.63
83_Q	87_L	0.549	0.63
166_H	217_E	0.547	0.63
108_E	145_R	0.545	0.62
176_V	299_I	0.544	0.62
30_Q	108_E	0.544	0.62
298_Y	301_A	0.543	0.62
61_V	64_L	0.543	0.62
51_G	55_P	0.541	0.62
174_N	305_T	0.541	0.62
108_E	112_D	0.541	0.62
210_R	213_T	0.539	0.61
249_E	287_V	0.539	0.61
307_E	310_E	0.536	0.61
106_S	110_A	0.536	0.61
280_I	283_Q	0.536	0.61
47_P	52_V	0.535	0.61
40_T	46_W	0.534	0.61
47_P	51_G	0.532	0.60
186_P	297_E	0.532	0.60
208_P	213_T	0.531	0.60
201_A	233_F	0.531	0.60
83_Q	86_A	0.530	0.60
61_V	138_A	0.529	0.60
8_I	94_M	0.521	0.59
152_S	209_Q	0.519	0.59
89_Q	310_E	0.518	0.58
314_N	317_A	0.518	0.58
95_P	119_V	0.518	0.58
171_A	307_E	0.518	0.58
189_L	222_L	0.517	0.58
289_L	294_K	0.516	0.58
131_F	137_G	0.514	0.58
59_P	62_A	0.514	0.58
207_Y	234_Q	0.514	0.58
30_Q	101_S	0.513	0.58
143_L	147_L	0.513	0.58
97_A	119_V	0.512	0.57
183_H	261_H	0.512	0.57
213_T	220_S	0.504	0.56
216_R	219_A	0.502	0.56
39_D	240_E	0.501	0.56
39_D	200_Y	0.500	0.56
13_L	37_V	0.500	0.56
219_A	223_G	0.500	0.56

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1lbqA	2	0.9656	100	0.215	Contact Map
3hcnA	2	0.9719	100	0.228	Contact Map
2h1vA	1	0.9219	100	0.286	Contact Map
2xwpA	5	0.7719	100	0.598	Contact Map
2xvyA	3	0.7406	100	0.664	Contact Map
4ccsA	1	0.6906	99.8	0.807	Contact Map
2jh3A	2	0.75	99.6	0.838	Contact Map
3lyhA	2	0.3719	99.6	0.845	Contact Map
1tjnA	4	0.3563	99.5	0.854	Contact Map
2xwsA	2	0.3625	99.4	0.859	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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