TNAB - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

TNAB - Low affinity tryptophan permease

UniProt:	P23173	Sequences: MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWLSSLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSSTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWFGNVFNVLPKFG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11006
Length:	415 (381)
Sequences:	29736 (19806)
Seq/√Len:	1014.7

ECOLI - TNAB MTR TYRP POTE AROP FRLA GABP PROY YBAT PHEP LYSP ADIC ANSP YIFK MMUP YGJI CYCA YJEM PUUP PLAP YJEH YCAM GADC CADB ARCD
BACSU - YTNA STET ROCC YDGF AAPA YBXG ASPP YBGF YECA YBEC GABP YHDG YVBW HUTM ROCE YFNA ARCD YNDE YCGH GERKB GERAB GERBB YDAO YFKT
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97U05 Q97XM0 Q7LXI7 Q97WS3 Q97X49 Q97ZB5 Q97VA6 Q97Y76 Q97Z63 Q97U33 Q97WD4 Q97VA8 Q97VR4 Q97YN3 Q97YX9 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
324_F	327_V	4.408	1.00
318_N	321_G	3.600	1.00
50_W	238_L	3.354	1.00
324_F	328_L	3.093	1.00
221_K	224_D	3.064	1.00
10_S	220_G	3.007	1.00
392_V	396_G	2.759	1.00
224_D	228_K	2.754	1.00
15_V	232_F	2.674	1.00
219_Y	225_K	2.662	1.00
78_K	86_N	2.649	1.00
11_A	232_F	2.521	1.00
282_I	286_C	2.487	1.00
370_K	374_K	2.436	1.00
325_K	328_L	2.351	1.00
361_V	367_L	2.347	1.00
218_C	308_D	2.308	1.00
272_K	275_L	2.295	1.00
367_L	371_A	2.287	1.00
318_N	322_G	2.279	1.00
90_G	313_L	2.274	1.00
14_G	219_Y	2.256	1.00
228_K	232_F	2.255	1.00
266_N	269_S	2.233	1.00
11_A	15_V	2.229	1.00
138_A	332_L	2.178	1.00
368_A	372_R	2.157	1.00
10_S	13_W	2.154	1.00
221_K	225_K	2.145	1.00
168_G	172_F	2.144	1.00
15_V	236_L	2.100	1.00
323_R	327_V	2.062	1.00
170_F	247_C	2.053	1.00
370_K	373_K	2.048	1.00
217_I	315_K	2.043	1.00
390_A	394_L	2.043	1.00
78_K	83_N	2.039	1.00
11_A	225_K	2.011	1.00
139_S	143_L	1.994	1.00
157_G	161_I	1.978	1.00
311_A	315_K	1.871	1.00
386_N	390_A	1.861	1.00
316_I	319_S	1.858	1.00
324_F	331_F	1.847	1.00
18_I	233_G	1.842	1.00
146_L	150_R	1.831	1.00
398_T	402_C	1.811	1.00
77_T	89_S	1.808	1.00
225_K	228_K	1.803	1.00
231_V	235_L	1.797	1.00
317_D	320_H	1.794	1.00
253_P	256_S	1.770	1.00
361_V	365_A	1.743	1.00
81_I	85_W	1.742	1.00
359_W	363_I	1.739	1.00
380_F	383_W	1.728	1.00
387_L	391_I	1.687	1.00
51_F	55_H	1.686	1.00
319_S	322_G	1.685	1.00
82_G	85_W	1.669	1.00
318_N	325_K	1.662	1.00
235_L	239_V	1.658	1.00
9_H	13_W	1.657	1.00
363_I	367_L	1.648	1.00
394_L	398_T	1.587	1.00
373_K	376_P	1.578	1.00
19_A	236_L	1.574	1.00
161_I	165_I	1.571	1.00
328_L	331_F	1.571	1.00
323_R	328_L	1.546	1.00
392_V	395_F	1.545	1.00
13_W	149_S	1.538	1.00
131_I	135_I	1.528	1.00
389_P	392_V	1.528	1.00
13_W	153_S	1.524	1.00
272_K	276_G	1.504	1.00
339_L	342_P	1.489	1.00
385_G	389_P	1.487	1.00
141_L	300_F	1.486	1.00
356_A	359_W	1.482	1.00
323_R	326_T	1.471	1.00
359_W	367_L	1.462	1.00
22_V	237_A	1.437	1.00
49_A	202_C	1.436	1.00
324_F	335_A	1.432	1.00
356_A	361_V	1.425	1.00
325_K	329_L	1.421	1.00
175_D	179_L	1.417	1.00
67_Y	79_D	1.410	1.00
384_G	388_I	1.408	1.00
388_I	392_V	1.400	1.00
108_N	133_T	1.394	1.00
317_D	321_G	1.385	1.00
58_L	231_V	1.382	1.00
125_N	128_I	1.378	1.00
285_F	289_V	1.377	1.00
335_A	339_L	1.376	1.00
324_F	342_P	1.374	1.00
389_P	393_I	1.373	1.00
124_A	128_I	1.370	1.00
174_V	250_G	1.362	1.00
45_I	198_A	1.361	1.00
338_Y	342_P	1.360	1.00
266_N	272_K	1.357	1.00
327_V	331_F	1.357	1.00
108_N	292_N	1.342	1.00
54_L	231_V	1.340	1.00
14_G	229_S	1.339	1.00
11_A	228_K	1.335	1.00
356_A	363_I	1.329	1.00
345_F	349_I	1.328	1.00
112_I	129_V	1.327	1.00
372_R	376_P	1.319	1.00
51_F	391_I	1.310	1.00
238_L	242_L	1.308	1.00
105_I	299_F	1.308	1.00
166_V	170_F	1.287	1.00
167_F	243_F	1.280	1.00
335_A	338_Y	1.278	1.00
81_I	370_K	1.274	1.00
390_A	393_I	1.271	1.00
57_G	230_V	1.265	1.00
171_F	247_C	1.261	1.00
70_G	217_I	1.261	1.00
317_D	322_G	1.255	1.00
387_L	390_A	1.255	1.00
397_I	401_L	1.254	1.00
270_L	275_L	1.254	1.00
34_L	42_G	1.249	1.00
329_L	333_P	1.238	1.00
131_I	339_L	1.234	1.00
104_Y	298_S	1.230	1.00
365_A	368_A	1.229	1.00
361_V	364_P	1.229	1.00
358_I	363_I	1.229	1.00
9_H	14_G	1.218	1.00
215_L	304_L	1.217	1.00
127_R	131_I	1.216	1.00
69_V	79_D	1.210	1.00
356_A	367_L	1.209	1.00
362_I	393_I	1.207	1.00
160_I	164_V	1.207	1.00
43_A	246_Y	1.199	1.00
269_S	272_K	1.191	1.00
366_V	370_K	1.190	1.00
391_I	395_F	1.181	1.00
162_S	290_F	1.180	1.00
321_G	325_K	1.179	1.00
268_D	272_K	1.178	1.00
155_F	297_S	1.177	1.00
12_F	16_M	1.175	1.00
239_V	243_F	1.172	1.00
87_I	91_I	1.169	1.00
360_A	364_P	1.166	1.00
127_R	130_G	1.159	1.00
222_R	227_I	1.151	1.00
338_Y	341_F	1.146	1.00
270_L	273_S	1.140	1.00
336_L	340_I	1.139	1.00
41_W	195_I	1.138	1.00
188_G	191_Y	1.138	1.00
358_I	361_V	1.134	1.00
57_G	234_S	1.120	1.00
316_I	326_T	1.118	1.00
358_I	365_A	1.117	1.00
60_L	73_F	1.117	1.00
398_T	401_L	1.117	1.00
324_F	329_L	1.106	1.00
256_S	276_G	1.105	1.00
75_T	79_D	1.102	1.00
361_V	368_A	1.099	1.00
318_N	323_R	1.099	1.00
356_A	360_A	1.098	1.00
382_V	385_G	1.096	1.00
128_I	132_C	1.095	1.00
345_F	352_A	1.092	1.00
170_F	251_N	1.091	1.00
328_L	332_L	1.088	1.00
69_V	75_T	1.085	1.00
371_A	374_K	1.074	1.00
359_W	366_V	1.074	1.00
77_T	85_W	1.071	1.00
84_T	88_I	1.070	1.00
396_G	399_V	1.065	1.00
105_I	134_A	1.063	1.00
400_I	404_F	1.056	1.00
324_F	341_F	1.053	1.00
395_F	398_T	1.052	1.00
192_F	196_F	1.050	1.00
395_F	399_V	1.048	1.00
64_N	76_I	1.046	1.00
378_Q	381_T	1.043	1.00
191_Y	194_Y	1.041	1.00
367_L	370_K	1.036	1.00
324_F	338_Y	1.035	1.00
389_P	396_G	1.034	1.00
326_T	329_L	1.032	1.00
178_I	182_A	1.032	1.00
265_G	269_S	1.022	1.00
164_V	168_G	1.019	1.00
254_R	257_F	1.018	1.00
192_F	195_I	1.017	1.00
325_K	330_T	1.016	1.00
129_V	132_C	1.013	1.00
281_G	285_F	1.010	1.00
171_F	175_D	1.005	1.00
138_A	328_L	1.001	1.00
319_S	323_R	1.000	1.00
327_V	335_A	1.000	1.00
172_F	175_D	1.000	1.00
54_L	58_L	0.997	1.00
359_W	362_I	0.997	1.00
385_G	388_I	0.996	1.00
8_K	220_G	0.994	1.00
128_I	131_I	0.990	1.00
180_R	183_T	0.984	1.00
172_F	176_Y	0.980	1.00
221_K	228_K	0.977	1.00
325_K	335_A	0.968	1.00
18_I	212_I	0.966	1.00
33_D	42_G	0.965	1.00
23_I	26_G	0.960	1.00
11_A	229_S	0.957	1.00
355_C	358_I	0.956	1.00
336_L	339_L	0.955	1.00
142_W	325_K	0.953	1.00
52_S	395_F	0.951	1.00
165_I	169_S	0.949	1.00
386_N	389_P	0.948	1.00
327_V	330_T	0.947	1.00
151_I	155_F	0.941	1.00
220_G	225_K	0.940	1.00
137_V	299_F	0.940	1.00
392_V	398_T	0.936	1.00
143_L	321_G	0.935	1.00
393_I	397_I	0.932	1.00
152_T	300_F	0.932	1.00
325_K	332_L	0.930	1.00
47_I	242_L	0.929	1.00
279_Q	283_I	0.928	1.00
326_T	330_T	0.926	1.00
112_I	116_I	0.924	1.00
59_L	389_P	0.924	1.00
320_H	324_F	0.923	1.00
50_W	206_F	0.923	1.00
175_D	178_I	0.921	1.00
94_A	310_L	0.917	1.00
186_T	189_T	0.915	1.00
16_M	153_S	0.914	1.00
113_S	117_S	0.912	1.00
150_R	154_L	0.910	1.00
367_L	374_K	0.910	1.00
321_G	324_F	0.909	1.00
55_H	59_L	0.907	1.00
15_V	229_S	0.905	1.00
359_W	365_A	0.905	1.00
358_I	367_L	0.903	1.00
174_V	177_S	0.901	1.00
62_E	65_L	0.896	1.00
179_L	183_T	0.895	1.00
196_F	398_T	0.889	1.00
327_V	338_Y	0.887	1.00
364_P	367_L	0.887	1.00
379_M	383_W	0.886	1.00
135_I	332_L	0.881	1.00
325_K	331_F	0.881	1.00
140_V	151_I	0.878	1.00
132_C	136_F	0.876	1.00
389_P	395_F	0.876	1.00
346_I	349_I	0.876	1.00
159_K	294_A	0.871	1.00
32_V	35_A	0.870	1.00
93_V	97_L	0.862	1.00
56_S	209_H	0.860	1.00
325_K	336_L	0.857	1.00
177_S	180_R	0.856	1.00
363_I	366_V	0.855	1.00
365_A	392_V	0.847	1.00
329_L	332_L	0.843	1.00
62_E	372_R	0.839	1.00
176_Y	179_L	0.838	1.00
399_V	402_C	0.837	1.00
361_V	371_A	0.835	1.00
282_I	285_F	0.835	1.00
98_Y	102_Y	0.833	1.00
364_P	371_A	0.833	1.00
9_H	149_S	0.831	1.00
364_P	368_A	0.829	1.00
107_A	111_I	0.829	1.00
167_F	171_F	0.828	1.00
371_A	375_F	0.826	1.00
361_V	370_K	0.821	1.00
269_S	273_S	0.820	1.00
153_S	157_G	0.818	1.00
150_R	153_S	0.818	1.00
147_A	150_R	0.816	1.00
55_H	391_I	0.809	1.00
320_H	323_R	0.803	1.00
43_A	249_M	0.802	1.00
345_F	353_G	0.802	1.00
63_A	76_I	0.800	1.00
17_V	215_L	0.796	1.00
331_F	334_P	0.794	1.00
265_G	268_D	0.791	1.00
359_W	364_P	0.789	1.00
131_I	336_L	0.787	1.00
280_H	283_I	0.786	1.00
366_V	369_I	0.786	1.00
135_I	139_S	0.780	1.00
399_V	403_W	0.780	1.00
347_Y	350_G	0.780	1.00
318_N	324_F	0.779	1.00
358_I	362_I	0.779	1.00
355_C	365_A	0.779	1.00
114_E	288_L	0.776	1.00
138_A	142_W	0.775	1.00
269_S	275_L	0.771	1.00
44_F	48_I	0.770	1.00
324_F	334_P	0.770	1.00
382_V	386_N	0.769	1.00
246_Y	250_G	0.769	1.00
145_S	304_L	0.767	1.00
106_S	110_A	0.766	1.00
126_P	130_G	0.763	1.00
286_C	290_F	0.756	1.00
366_V	371_A	0.756	1.00
210_G	214_S	0.755	1.00
357_T	365_A	0.754	1.00
19_A	237_A	0.753	1.00
335_A	342_P	0.752	1.00
324_F	332_L	0.752	1.00
332_L	335_A	0.751	1.00
74_N	312_D	0.749	1.00
179_L	182_A	0.749	1.00
368_A	371_A	0.748	1.00
325_K	341_F	0.747	1.00
323_R	338_Y	0.747	1.00
43_A	47_I	0.745	1.00
65_L	379_M	0.743	1.00
332_L	336_L	0.742	1.00
322_G	325_K	0.741	1.00
393_I	396_G	0.740	1.00
102_Y	348_G	0.738	1.00
401_L	404_F	0.736	1.00
216_I	226_L	0.736	1.00
181_D	184_S	0.734	1.00
383_W	387_L	0.733	1.00
113_S	126_P	0.733	1.00
382_V	389_P	0.732	1.00
139_S	142_W	0.730	1.00
103_A	204_A	0.728	1.00
395_F	404_F	0.724	1.00
167_F	247_C	0.724	1.00
59_L	365_A	0.722	1.00
275_L	284_E	0.722	1.00
221_K	227_I	0.722	1.00
109_G	129_V	0.721	1.00
89_S	363_I	0.720	1.00
23_I	240_I	0.715	1.00
179_L	184_S	0.714	1.00
396_G	400_I	0.712	1.00
384_G	389_P	0.711	1.00
362_I	365_A	0.709	1.00
30_L	245_L	0.709	1.00
365_A	369_I	0.707	1.00
392_V	403_W	0.705	1.00
74_N	90_G	0.702	1.00
57_G	209_H	0.699	1.00
392_V	399_V	0.698	1.00
222_R	225_K	0.698	1.00
369_I	390_A	0.697	1.00
380_F	386_N	0.697	1.00
71_S	75_T	0.697	1.00
12_F	15_V	0.697	1.00
85_W	88_I	0.695	1.00
381_T	385_G	0.694	1.00
362_I	366_V	0.694	1.00
173_Q	176_Y	0.693	1.00
134_A	335_A	0.693	1.00
49_A	203_L	0.692	1.00
101_T	303_T	0.691	1.00
175_D	183_T	0.691	1.00
134_A	138_A	0.688	1.00
381_T	384_G	0.687	1.00
66_N	378_Q	0.685	1.00
130_G	339_L	0.685	1.00
21_T	301_G	0.684	1.00
323_R	331_F	0.683	1.00
363_I	370_K	0.682	1.00
367_L	372_R	0.682	1.00
180_R	184_S	0.680	1.00
273_S	276_G	0.677	1.00
14_G	215_L	0.677	1.00
331_F	335_A	0.676	1.00
41_W	188_G	0.675	1.00
361_V	366_V	0.674	1.00
81_I	366_V	0.670	1.00
143_L	147_A	0.666	1.00
369_I	373_K	0.664	1.00
177_S	181_D	0.660	1.00
337_L	340_I	0.657	1.00
392_V	404_F	0.655	1.00
64_N	213_P	0.652	1.00
365_A	371_A	0.651	1.00
331_F	342_P	0.647	1.00
380_F	384_G	0.647	1.00
358_I	364_P	0.646	1.00
44_F	47_I	0.645	1.00
382_V	388_I	0.641	1.00
15_V	18_I	0.641	1.00
167_F	170_F	0.639	1.00
357_T	360_A	0.638	1.00
109_G	130_G	0.638	1.00
374_K	377_N	0.637	1.00
396_G	403_W	0.633	1.00
13_W	150_R	0.631	1.00
42_G	245_L	0.631	1.00
147_A	151_I	0.631	1.00
245_L	249_M	0.630	1.00
323_R	341_F	0.628	1.00
219_Y	226_L	0.627	1.00
268_D	271_V	0.625	1.00
325_K	333_P	0.624	1.00
333_P	337_L	0.624	1.00
343_N	346_I	0.623	1.00
368_A	389_P	0.620	1.00
337_L	341_F	0.620	1.00
194_Y	197_M	0.620	1.00
232_F	236_L	0.618	1.00
20_G	156_L	0.618	1.00
105_I	108_N	0.616	1.00
141_L	304_L	0.613	1.00
323_R	335_A	0.613	1.00
386_N	392_V	0.612	1.00
62_E	66_N	0.611	1.00
319_S	325_K	0.611	1.00
232_F	235_L	0.608	1.00
331_F	338_Y	0.607	1.00
271_V	274_F	0.606	1.00
372_R	375_F	0.605	1.00
211_N	305_G	0.605	1.00
343_N	347_Y	0.603	1.00
8_K	12_F	0.602	1.00
378_Q	382_V	0.601	1.00
187_A	191_Y	0.601	1.00
382_V	392_V	0.601	1.00
384_G	387_L	0.600	1.00
197_M	201_V	0.600	1.00
53_M	209_H	0.599	1.00
386_N	393_I	0.597	1.00
149_S	153_S	0.597	1.00
388_I	395_F	0.597	1.00
74_N	86_N	0.597	1.00
66_N	379_M	0.595	1.00
360_A	363_I	0.594	1.00
137_V	300_F	0.592	1.00
361_V	374_K	0.591	1.00
23_I	159_K	0.591	1.00
47_I	51_F	0.589	1.00
178_I	181_D	0.588	1.00
153_S	156_L	0.588	1.00
187_A	190_S	0.588	1.00
381_T	386_N	0.587	1.00
142_W	329_L	0.587	1.00
106_S	348_G	0.586	1.00
267_V	270_L	0.586	1.00
355_C	362_I	0.585	1.00
236_L	240_I	0.584	1.00
108_N	296_A	0.584	1.00
327_V	342_P	0.582	1.00
174_V	179_L	0.580	1.00
156_L	159_K	0.580	1.00
394_L	397_I	0.580	1.00
132_C	135_I	0.578	1.00
371_A	376_P	0.578	1.00
196_F	200_P	0.578	1.00
316_I	320_H	0.577	1.00
54_L	234_S	0.576	1.00
346_I	350_G	0.576	1.00
66_N	376_P	0.576	1.00
332_L	342_P	0.574	1.00
19_A	23_I	0.568	1.00
93_V	96_V	0.568	1.00
334_P	338_Y	0.568	1.00
18_I	22_V	0.567	1.00
104_Y	107_A	0.567	1.00
357_T	361_V	0.566	1.00
135_I	138_A	0.566	1.00
27_M	244_W	0.566	1.00
76_I	213_P	0.564	1.00
179_L	250_G	0.564	1.00
303_T	307_F	0.563	1.00
400_I	403_W	0.563	1.00
356_A	365_A	0.562	1.00
384_G	390_A	0.562	1.00
53_M	56_S	0.561	1.00
115_T	292_N	0.561	1.00
308_D	311_A	0.561	1.00
365_A	370_K	0.560	1.00
389_P	403_W	0.557	1.00
109_G	126_P	0.556	1.00
360_A	367_L	0.556	1.00
299_F	334_P	0.555	1.00
22_V	233_G	0.554	1.00
247_C	250_G	0.553	1.00
317_D	323_R	0.553	1.00
399_V	404_F	0.552	1.00
360_A	368_A	0.550	1.00
367_L	373_K	0.548	1.00
77_T	86_N	0.547	1.00
108_N	295_V	0.547	1.00
12_F	150_R	0.545	1.00
332_L	339_L	0.545	1.00
325_K	342_P	0.544	1.00
24_G	27_M	0.544	1.00
308_D	314_F	0.544	1.00
265_G	272_K	0.542	1.00
63_A	80_L	0.541	1.00
236_L	243_F	0.541	1.00
359_W	368_A	0.540	1.00
281_G	284_E	0.539	1.00
86_N	90_G	0.539	1.00
271_V	275_L	0.539	1.00
46_L	245_L	0.537	1.00
269_S	276_G	0.537	1.00
227_I	230_V	0.537	1.00
355_C	367_L	0.536	1.00
383_W	386_N	0.536	1.00
306_L	310_L	0.535	1.00
359_W	371_A	0.535	1.00
285_F	288_L	0.534	1.00
104_Y	299_F	0.534	1.00
112_I	292_N	0.532	1.00
219_Y	229_S	0.530	1.00
135_I	336_L	0.529	1.00
21_T	302_V	0.526	1.00
18_I	21_T	0.525	1.00
160_I	240_I	0.524	1.00
140_V	144_S	0.524	1.00
83_N	87_I	0.523	1.00
108_N	112_I	0.523	1.00
133_T	137_V	0.523	1.00
94_A	331_F	0.523	1.00
8_K	146_L	0.517	1.00
25_G	29_A	0.516	1.00
362_I	397_I	0.515	1.00
379_M	382_V	0.514	1.00
17_V	20_G	0.513	1.00
39_F	249_M	0.511	1.00
101_T	105_I	0.511	1.00
123_H	126_P	0.511	1.00
152_T	159_K	0.511	1.00
81_I	368_A	0.511	1.00
299_F	302_V	0.510	1.00
100_L	103_A	0.509	1.00
335_A	341_F	0.509	1.00
138_A	303_T	0.509	1.00
393_I	402_C	0.507	1.00
8_K	145_S	0.507	1.00
25_G	204_A	0.507	1.00
327_V	341_F	0.507	1.00
98_Y	333_P	0.506	1.00
356_A	369_I	0.505	1.00
12_F	153_S	0.505	1.00
366_V	393_I	0.504	1.00
244_W	248_T	0.504	1.00
52_S	55_H	0.504	1.00
105_I	109_G	0.504	1.00
74_N	78_K	0.503	1.00
360_A	365_A	0.502	1.00
324_F	333_P	0.501	1.00
388_I	391_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.9205	100	0.312	Contact Map
3giaA	1	0.9398	100	0.381	Contact Map
4djkA	2	0.9325	100	0.393	Contact Map
2jlnA	1	0.9325	98.9	0.806	Contact Map
3dh4A	3	0.9229	98.6	0.825	Contact Map
2xq2A	2	0.9229	98.4	0.833	Contact Map
4wgvA	2	0.8723	98.4	0.833	Contact Map
4us3A	1	0.9446	98.2	0.842	Contact Map
4xp4A	1	0.9639	98.2	0.843	Contact Map
2a65A	2	0.9783	98.2	0.846	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0122 seconds.