GREMLIN Database
PCKA - Phosphoenolpyruvate carboxykinase [ATP]
UniProt: P22259 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10688
Length: 540 (506)
Sequences: 1517 (710)
Seq/√Len: 31.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
74_R79_R5.7541.00
497_R507_Q4.9251.00
237_V351_A4.6821.00
427_K431_A4.2521.00
294_K302_N4.1661.00
519_D522_D3.7921.00
44_Y119_F3.7251.00
371_V462_I3.7081.00
502_S505_Q3.4571.00
238_G242_D3.3461.00
190_F203_G3.2841.00
34_Q319_G3.2361.00
103_Q197_E3.1461.00
58_D328_K3.1371.00
512_T516_L3.1281.00
122_D136_R3.0951.00
291_K324_D3.0191.00
454_D490_D3.0121.00
134_S166_D2.8911.00
373_R435_Q2.8901.00
448_K451_S2.8551.00
112_Q174_K2.8391.00
308_A334_V2.8021.00
376_A430_Q2.7991.00
108_L183_Q2.7981.00
81_T225_L2.7911.00
423_E427_K2.7791.00
50_T56_A2.7611.00
473_F495_D2.7461.00
471_E484_T2.7261.00
132_R159_E2.7141.00
509_K512_T2.6781.00
262_K460_D2.6371.00
151_M335_S2.5651.00
51_N320_T2.5571.00
474_T481_A2.5041.00
387_F403_P2.5021.00
140_E174_K2.4680.99
75_D196_T2.4570.99
24_V117_R2.4550.99
139_T145_A2.4280.99
85_A93_D2.4250.99
353_H432_A2.4070.99
75_D82_F2.3900.99
130_D276_D2.3750.99
522_D525_T2.3520.99
498_N503_P2.3470.99
473_F484_T2.3250.99
33_Y49_L2.2100.99
113_L172_G2.1850.99
356_K437_Y2.1690.99
36_E55_V2.1420.98
44_Y117_R2.1390.98
371_V458_I2.1310.98
194_N197_E2.1250.98
435_Q468_D2.1020.98
30_D319_G2.0660.98
106_K197_E2.0530.98
75_D78_T2.0390.98
99_P196_T1.9870.97
124_F132_R1.9660.97
35_E38_D1.9640.97
47_G57_V1.9450.97
178_P203_G1.9240.97
380_Q426_V1.8870.96
315_V321_I1.8760.96
76_D79_R1.8750.96
62_F189_N1.8710.96
515_K519_D1.8480.96
97_L101_T1.8300.96
26_N122_D1.8150.96
156_S159_E1.7980.95
30_D306_R1.7820.95
485_E491_T1.7790.95
50_T315_V1.7720.95
125_C215_M1.7700.95
225_L416_L1.7660.95
219_M281_F1.7570.95
451_S454_D1.7480.94
243_V278_V1.7460.94
289_T332_T1.7450.94
74_R96_P1.7300.94
148_V152_F1.7290.94
475_L482_I1.7280.94
296_A452_I1.7130.94
136_R165_P1.7030.94
30_D34_Q1.7010.94
106_K199_M1.6960.94
244_A463_L1.6950.94
77_T196_T1.6880.93
362_A391_L1.6870.93
230_S281_F1.6860.93
57_V144_Q1.6850.93
151_M289_T1.6720.93
290_I326_G1.6520.93
362_A443_W1.6160.92
230_S416_L1.6130.92
444_N499_T1.6040.91
495_D498_N1.6000.91
137_F148_V1.5870.91
160_L163_F1.5700.91
97_L192_A1.5500.90
75_D81_T1.5470.90
35_E119_F1.5460.90
316_R320_T1.5440.90
109_V172_G1.5430.90
150_N335_S1.5430.90
444_N450_I1.5400.90
148_V211_M1.5340.90
68_K86_D1.5300.89
458_I462_I1.5260.89
78_T196_T1.5240.89
131_T228_I1.5220.89
62_F396_R1.5220.89
289_T334_V1.5210.89
135_V163_F1.5140.89
359_F436_A1.5060.89
467_L470_A1.5030.89
154_R339_Y1.4990.88
108_L182_E1.4930.88
56_A315_V1.4930.88
98_S101_T1.4870.88
304_I323_F1.4710.87
310_L334_V1.4550.87
385_S520_N1.4520.87
34_Q38_D1.4480.87
178_P190_F1.4360.86
144_Q208_G1.4350.86
475_L480_L1.4300.86
531_A534_V1.4280.86
37_L49_L1.4240.86
277_G353_H1.4230.86
266_I351_A1.4200.85
176_T188_E1.4140.85
97_L185_L1.3860.84
477_M514_A1.3830.84
124_F156_S1.3780.84
531_A535_A1.3770.84
218_M222_L1.3730.83
505_Q509_K1.3700.83
474_T479_N1.3640.83
112_Q140_E1.3560.83
36_E142_A1.3540.83
99_P103_Q1.3460.82
180_W185_L1.3400.82
373_R481_A1.3400.82
120_V138_I1.3360.82
450_I493_I1.3340.82
299_E342_D1.3340.82
264_R345_V1.3330.82
28_S31_L1.3310.81
237_V345_V1.3240.81
22_D117_R1.3230.81
75_D194_N1.3190.81
52_L323_F1.3130.81
46_R142_A1.3070.80
68_K95_K1.3050.80
152_F215_M1.3020.80
76_D196_T1.3010.80
375_T378_Q1.3000.80
121_V145_A1.2970.80
175_C178_P1.2880.79
122_D165_P1.2630.78
377_D532_A1.2620.78
361_T382_H1.2590.78
242_D355_T1.2590.78
77_T82_F1.2590.78
230_S414_L1.2430.77
77_T221_Y1.2380.76
378_Q479_N1.2290.76
111_R114_S1.2280.76
466_S487_P1.2270.76
70_K414_L1.2220.76
227_G275_D1.2130.75
475_L479_N1.2120.75
243_V351_A1.2000.74
208_G309_L1.1980.74
54_A303_A1.1980.74
101_T104_H1.1980.74
121_V149_K1.1890.73
329_T332_T1.1790.73
144_Q171_N1.1760.73
17_I20_V1.1750.73
308_A340_H1.1730.72
29_Y149_K1.1690.72
102_W197_E1.1660.72
338_I349_S1.1660.72
25_Y122_D1.1650.72
27_P31_L1.1610.72
166_D198_R1.1600.72
131_T226_K1.1350.70
24_V27_P1.1330.70
457_A489_V1.1300.70
437_Y468_D1.1300.70
171_N211_M1.1300.70
291_K296_A1.1300.70
451_S458_I1.1290.69
129_P350_K1.1240.69
475_L495_D1.1120.68
429_M436_A1.1090.68
507_Q511_E1.1060.68
128_N274_D1.1000.67
31_L35_E1.0940.67
154_R338_I1.0940.67
503_P507_Q1.0930.67
179_Q182_E1.0920.67
109_V175_C1.0910.67
375_T481_A1.0900.67
429_M434_A1.0820.66
191_V205_T1.0760.66
83_W411_A1.0740.66
178_P185_L1.0650.65
347_P350_K1.0650.65
200_Q214_G1.0650.65
243_V352_G1.0580.64
178_P183_Q1.0580.64
52_L308_A1.0580.64
116_K140_E1.0560.64
362_A365_F1.0550.64
314_T328_K1.0480.64
335_S390_K1.0450.63
237_V243_V1.0410.63
48_V315_V1.0370.63
51_N321_I1.0280.62
239_E262_K1.0280.62
240_K243_V1.0270.62
103_Q106_K1.0250.62
24_V35_E1.0190.61
299_E302_N1.0180.61
275_D431_A1.0130.61
151_M309_L1.0090.61
108_L179_Q1.0080.61
109_V201_L1.0050.60
34_Q306_R1.0010.60
139_T211_M0.9970.60
150_N153_I0.9930.59
52_L321_I0.9910.59
78_T82_F0.9840.59
423_E530_G0.9800.58
473_F498_N0.9790.58
155_P159_E0.9770.58
215_M218_M0.9670.57
74_R78_T0.9660.57
306_R319_G0.9610.57
454_D458_I0.9590.57
358_I459_I0.9570.57
534_V537_G0.9550.56
365_F516_L0.9540.56
193_F217_S0.9530.56
74_R98_S0.9520.56
471_E485_E0.9480.56
137_F211_M0.9450.56
508_E512_T0.9440.55
481_A484_T0.9430.55
74_R80_D0.9410.55
398_I402_T0.9380.55
314_T325_D0.9350.55
156_S160_L0.9350.55
439_V459_I0.9340.55
62_F71_Y0.9330.55
416_L420_Q0.9320.55
144_Q309_L0.9310.54
169_V215_M0.9300.54
78_T81_T0.9290.54
72_I217_S0.9250.54
37_L47_G0.9230.54
484_T495_D0.9220.54
125_C281_F0.9210.54
381_Y537_G0.9170.53
458_I480_L0.9170.53
35_E117_R0.9140.53
505_Q508_E0.9130.53
309_L334_V0.9110.53
293_S296_A0.9060.52
105_L203_G0.9010.52
61_I188_E0.8990.52
315_V318_D0.8970.52
444_N448_K0.8970.52
239_E264_R0.8930.51
33_Y37_L0.8920.51
143_W384_L0.8900.51
167_F222_L0.8850.51
411_A414_L0.8780.50
303_A308_A0.8750.50
133_L222_L0.8730.50
357_V434_A0.8730.50
303_A323_F0.8710.50
462_I467_L0.8700.49
259_T461_A0.8700.49
241_G387_F0.8690.49
289_T321_I0.8660.49
216_F220_N0.8650.49
357_V428_R0.8640.49
316_R357_V0.8640.49
457_A487_P0.8610.49
163_F166_D0.8600.49
36_E344_I0.8590.49
130_D227_G0.8590.49
105_L178_P0.8560.48
54_A323_F0.8550.48
47_G55_V0.8550.48
477_M511_E0.8550.48
217_S415_S0.8540.48
310_L321_I0.8470.48
83_W418_P0.8470.48
466_S470_A0.8460.48
229_A424_V0.8460.48
183_Q190_F0.8440.47
152_F190_F0.8390.47
376_A436_A0.8390.47
133_L167_F0.8380.47
533_L536_A0.8380.47
457_A461_A0.8370.47
291_K326_G0.8330.46
138_I170_M0.8320.46
27_P121_V0.8310.46
495_D507_Q0.8310.46
133_L226_K0.8310.46
99_P194_N0.8310.46
473_F482_I0.8300.46
124_F159_E0.8280.46
105_L190_F0.8280.46
37_L45_E0.8270.46
67_P329_T0.8250.46
183_Q203_G0.8240.46
206_W396_R0.8180.45
289_T323_F0.8160.45
113_L118_L0.8160.45
143_W208_G0.8160.45
81_T221_Y0.8130.45
278_V351_A0.8130.45
385_S407_A0.8120.45
356_K435_Q0.8100.45
309_L335_S0.8100.45
428_R432_A0.8040.44
70_K217_S0.8030.44
470_A484_T0.8010.44
26_N136_R0.8010.44
364_A401_P0.7950.43
472_T481_A0.7930.43
458_I490_D0.7900.43
398_I401_P0.7860.43
167_F198_R0.7850.43
504_E508_E0.7840.43
149_K154_R0.7820.42
261_P460_D0.7820.42
293_S452_I0.7820.42
27_P145_A0.7810.42
491_T498_N0.7790.42
85_A113_L0.7790.42
67_P396_R0.7740.42
262_K299_E0.7730.42
86_D95_K0.7730.42
444_N447_G0.7720.42
81_T416_L0.7710.42
25_Y136_R0.7680.41
57_V208_G0.7660.41
193_F200_Q0.7650.41
518_I537_G0.7640.41
322_D325_D0.7630.41
106_K110_T0.7600.41
470_A487_P0.7580.40
169_V202_I0.7580.40
52_L303_A0.7560.40
48_V319_G0.7550.40
109_V203_G0.7540.40
302_N305_R0.7540.40
502_S508_E0.7540.40
293_S411_A0.7530.40
170_M480_L0.7520.40
364_A393_G0.7490.40
242_D356_K0.7480.40
148_V169_V0.7470.40
229_A427_K0.7450.39
264_R344_I0.7430.39
38_D504_E0.7420.39
423_E431_A0.7420.39
198_R222_L0.7420.39
315_V319_G0.7400.39
527_T530_G0.7400.39
159_E163_F0.7390.39
33_Y306_R0.7350.39
158_E301_Y0.7350.39
72_I82_F0.7350.39
36_E46_R0.7340.39
293_S324_D0.7330.39
446_T519_D0.7330.39
299_E345_V0.7310.38
134_S163_F0.7300.38
477_M507_Q0.7280.38
76_D504_E0.7280.38
304_I334_V0.7280.38
427_K498_N0.7270.38
338_I357_V0.7260.38
356_K462_I0.7250.38
59_T272_G0.7230.38
146_H335_S0.7220.38
71_Y192_A0.7180.37
24_V44_Y0.7150.37
21_H117_R0.7130.37
143_W185_L0.7130.37
302_N306_R0.7130.37
61_I278_V0.7070.37
345_V414_L0.7070.37
71_Y186_N0.7070.37
439_V462_I0.7070.37
175_C185_L0.7060.36
492_K498_N0.7050.36
143_W223_L0.7040.36
476_P511_E0.7030.36
303_A306_R0.7030.36
82_F196_T0.7030.36
70_K191_V0.6980.36
55_V344_I0.6940.36
159_E166_D0.6930.36
278_V537_G0.6930.36
221_Y225_L0.6910.35
120_V525_T0.6910.35
108_L175_C0.6900.35
77_T81_T0.6890.35
275_D428_R0.6890.35
83_W459_I0.6890.35
72_I195_L0.6890.35
491_T495_D0.6880.35
109_V190_F0.6880.35
83_W417_H0.6880.35
261_P299_E0.6870.35
462_I465_G0.6870.35
222_L411_A0.6870.35
17_I110_T0.6860.35
390_K402_T0.6840.35
54_A304_I0.6800.35
133_L218_M0.6790.34
454_D492_K0.6790.34
310_L403_P0.6790.34
301_Y320_T0.6790.34
396_R412_A0.6780.34
310_L313_V0.6770.34
235_A278_V0.6760.34
50_T321_I0.6760.34
130_D226_K0.6750.34
376_A426_V0.6750.34
384_L407_A0.6740.34
127_A349_S0.6720.34
223_L272_G0.6710.34
317_E485_E0.6710.34
144_Q206_W0.6700.34
180_W183_Q0.6680.34
27_P35_E0.6670.34
241_G461_A0.6660.34
182_E185_L0.6660.34
452_I482_I0.6660.34
126_G167_F0.6660.34
403_P516_L0.6640.33
75_D79_R0.6630.33
501_A508_E0.6620.33
20_V25_Y0.6590.33
317_E501_A0.6580.33
109_V219_M0.6580.33
446_T499_T0.6580.33
124_F134_S0.6570.33
229_A414_L0.6570.33
518_I538_P0.6560.33
228_I272_G0.6540.33
238_G241_G0.6530.33
468_D472_T0.6520.33
495_D501_A0.6510.32
76_D82_F0.6490.32
519_D535_A0.6490.32
393_G401_P0.6480.32
354_A500_Y0.6470.32
407_A416_L0.6470.32
389_A398_I0.6460.32
129_P227_G0.6460.32
68_K179_Q0.6460.32
466_S504_E0.6450.32
303_A414_L0.6450.32
344_I380_Q0.6440.32
123_A389_A0.6430.32
381_Y521_F0.6420.32
164_K170_M0.6420.32
56_A402_T0.6420.32
448_K469_N0.6400.32
503_P511_E0.6400.32
62_F214_G0.6390.32
389_A459_I0.6390.32
139_T217_S0.6390.32
178_P205_T0.6370.31
220_N231_M0.6370.31
240_K525_T0.6360.31
77_T226_K0.6360.31
299_E343_N0.6350.31
190_F201_L0.6340.31
50_T54_A0.6340.31
48_V323_F0.6340.31
430_Q508_E0.6330.31
50_T78_T0.6320.31
111_R115_G0.6320.31
167_F221_Y0.6320.31
131_T274_D0.6300.31
377_D404_T0.6290.31
364_A390_K0.6280.31
294_K301_Y0.6280.31
126_G208_G0.6270.31
514_A538_P0.6270.31
439_V458_I0.6260.31
476_P495_D0.6250.31
372_S458_I0.6230.30
99_P197_E0.6230.30
141_V145_A0.6210.30
437_Y467_L0.6210.30
20_V115_G0.6190.30
93_D411_A0.6180.30
188_E396_R0.6180.30
313_V316_R0.6170.30
243_V353_H0.6150.30
55_V472_T0.6150.30
238_G243_V0.6150.30
28_S110_T0.6150.30
407_A418_P0.6140.30
372_S469_N0.6140.30
305_R453_K0.6140.30
372_S382_H0.6140.30
419_T527_T0.6130.30
296_A451_S0.6120.30
25_Y165_P0.6120.30
259_T341_I0.6120.30
171_N214_G0.6120.30
86_D93_D0.6100.30
17_I25_Y0.6090.30
103_Q194_N0.6080.29
152_F192_A0.6080.29
62_F106_K0.6080.29
161_A317_E0.6080.29
436_A452_I0.6050.29
70_K153_I0.6050.29
59_T71_Y0.6050.29
196_T309_L0.6040.29
515_K535_A0.6040.29
501_A505_Q0.6040.29
316_R420_Q0.6040.29
501_A534_V0.6030.29
385_S408_C0.6020.29
315_V327_S0.6020.29
278_V372_S0.6020.29
47_G59_T0.6010.29
105_L192_A0.5980.29
70_K189_N0.5980.29
289_T414_L0.5970.29
123_A372_S0.5960.29
310_L524_Y0.5940.29
446_T502_S0.5930.28
343_N356_K0.5930.28
379_T387_F0.5920.28
135_V148_V0.5920.28
109_V171_N0.5920.28
338_I346_K0.5910.28
111_R181_K0.5910.28
371_V439_V0.5900.28
102_W194_N0.5900.28
476_P481_A0.5900.28
109_V199_M0.5890.28
108_L319_G0.5880.28
26_N301_Y0.5880.28
151_M340_H0.5870.28
187_S191_V0.5860.28
98_S191_V0.5850.28
372_S480_L0.5850.28
158_E162_G0.5840.28
150_N289_T0.5840.28
70_K384_L0.5840.28
79_R487_P0.5820.28
416_L419_T0.5820.28
124_F163_F0.5810.28
344_I347_P0.5810.28
167_F218_M0.5810.28
452_I473_F0.5800.28
423_E446_T0.5790.28
137_F169_V0.5790.28
36_E307_D0.5790.28
400_E512_T0.5780.27
76_D81_T0.5770.27
355_T435_Q0.5770.27
502_S507_Q0.5770.27
47_G227_G0.5770.27
54_A296_A0.5770.27
167_F219_M0.5740.27
172_G372_S0.5730.27
125_C152_F0.5730.27
167_F187_S0.5720.27
391_L396_R0.5720.27
393_G398_I0.5720.27
274_D536_A0.5710.27
301_Y526_D0.5700.27
419_T524_Y0.5700.27
240_K433_G0.5690.27
237_V242_D0.5690.27
78_T230_S0.5690.27
218_M235_A0.5680.27
193_F218_M0.5680.27
457_A486_L0.5670.27
71_Y185_L0.5670.27
71_Y189_N0.5670.27
382_H385_S0.5670.27
493_I498_N0.5650.27
334_V403_P0.5650.27
21_H24_V0.5630.26
23_I98_S0.5630.26
277_G432_A0.5630.26
504_E507_Q0.5620.26
33_Y54_A0.5620.26
193_F454_D0.5610.26
144_Q174_K0.5610.26
356_K459_I0.5610.26
512_T519_D0.5600.26
372_S453_K0.5560.26
141_V174_K0.5550.26
435_Q511_E0.5540.26
55_V135_V0.5540.26
110_T114_S0.5540.26
365_F509_K0.5530.26
81_T420_Q0.5520.26
79_R96_P0.5520.26
373_R498_N0.5510.26
36_E143_W0.5510.26
151_M214_G0.5500.26
49_L452_I0.5500.26
381_Y385_S0.5490.26
497_R502_S0.5490.26
426_V533_L0.5490.26
112_Q116_K0.5480.26
80_D262_K0.5480.26
139_T148_V0.5480.26
272_G281_F0.5470.25
78_T189_N0.5470.25
154_R160_L0.5470.25
378_Q478_F0.5460.25
80_D431_A0.5460.25
144_Q211_M0.5450.25
48_V58_D0.5440.25
208_G307_D0.5430.25
475_L510_A0.5430.25
485_E488_G0.5420.25
474_T484_T0.5410.25
52_L304_I0.5410.25
451_S490_D0.5410.25
227_G326_G0.5400.25
105_L183_Q0.5400.25
446_T509_K0.5400.25
108_L178_P0.5390.25
296_A382_H0.5380.25
78_T221_Y0.5380.25
187_S358_I0.5370.25
239_E504_E0.5370.25
356_K472_T0.5370.25
66_S335_S0.5360.25
59_T127_A0.5360.25
126_G142_A0.5360.25
26_N536_A0.5360.25
402_T416_L0.5350.25
165_P277_G0.5350.25
327_S375_T0.5350.25
197_E320_T0.5350.25
158_E163_F0.5350.25
219_M223_L0.5350.25
470_A486_L0.5340.25
36_E208_G0.5340.25
155_P160_L0.5330.25
439_V450_I0.5330.25
123_A154_R0.5320.25
390_K399_T0.5320.25
68_K423_E0.5320.25
36_E47_G0.5310.25
295_E453_K0.5310.25
498_N501_A0.5300.24
36_E227_G0.5300.24
473_F491_T0.5300.24
460_D464_N0.5300.24
422_A490_D0.5300.24
85_A94_N0.5300.24
220_N230_S0.5290.24
124_F414_L0.5290.24
346_K503_P0.5290.24
144_Q398_I0.5280.24
148_V215_M0.5270.24
119_F323_F0.5260.24
118_L172_G0.5260.24
104_H179_Q0.5260.24
335_S414_L0.5250.24
132_R155_P0.5250.24
62_F389_A0.5240.24
146_H307_D0.5230.24
171_N460_D0.5230.24
306_R323_F0.5230.24
70_K221_Y0.5230.24
166_D226_K0.5230.24
323_F334_V0.5230.24
238_G263_R0.5220.24
141_V170_M0.5220.24
78_T195_L0.5200.24
216_F409_F0.5200.24
373_R468_D0.5190.24
125_C219_M0.5190.24
190_F310_L0.5180.24
433_G504_E0.5180.24
186_N434_A0.5180.24
59_T203_G0.5180.24
467_L486_L0.5170.24
325_D403_P0.5170.24
20_V118_L0.5170.24
466_S472_T0.5160.24
120_V145_A0.5160.24
66_S245_V0.5150.24
49_L278_V0.5150.24
26_N116_K0.5140.23
227_G495_D0.5140.23
46_R126_G0.5140.23
477_M497_R0.5140.23
211_M414_L0.5130.23
376_A411_A0.5130.23
373_R434_A0.5110.23
359_F407_A0.5110.23
274_D424_V0.5110.23
76_D519_D0.5110.23
461_A489_V0.5100.23
55_V451_S0.5100.23
225_L230_S0.5090.23
72_I411_A0.5090.23
120_V136_R0.5090.23
492_K503_P0.5090.23
220_N409_F0.5090.23
291_K320_T0.5080.23
107_G275_D0.5080.23
153_I358_I0.5070.23
389_A396_R0.5070.23
157_D161_A0.5070.23
466_S469_N0.5060.23
230_S345_V0.5060.23
289_T335_S0.5060.23
471_E501_A0.5050.23
324_D535_A0.5050.23
359_F379_T0.5050.23
261_P390_K0.5040.23
134_S153_I0.5040.23
477_M510_A0.5040.23
109_V113_L0.5030.23
108_L185_L0.5030.23
70_K192_A0.5030.23
113_L321_I0.5020.23
157_D160_L0.5020.23
191_V473_F0.5020.23
158_E161_A0.5010.23
80_D522_D0.5010.23
511_E534_V0.5010.23
458_I486_L0.5010.23
368_L482_I0.5010.23
185_L190_F0.5010.23
238_G356_K0.5010.23
55_V350_K0.5000.23
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2olrA 1 0.9778 100 0.239 Contact Map
1ytmA 1 0.9444 100 0.24 Contact Map
1j3bA 2 0.9407 100 0.245 Contact Map
1ii2A 2 0.9389 100 0.255 Contact Map
2zciA 2 0.9019 100 0.491 Contact Map
4r43A 1 0.9093 100 0.491 Contact Map
2fafA 1 0.9111 100 0.517 Contact Map
4gmuA 1 0.9278 100 0.559 Contact Map
2p5tB 1 0.3778 93.9 0.975 Contact Map
1xjcA 2 0.2352 92.3 0.976 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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