SYC - ECOLI - GREMLIN Contacts

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SYC - Cysteine--tRNA ligase

UniProt:	P21888	Sequences: MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10196
Length:	461 (412)
Sequences:	20100 (11230)
Seq/√Len:	553.3

ECOLI - SYC SYM SYI SYV SYL
BACSU - SYC SYM SYV SYI SYL
HALSA - SYC SYM SYV SYL SYI
SULSO - SYC SYM SYV SYL2 SYL1 SYI

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
54_L	59_Y	5.198	1.00
126_E	130_A	3.670	1.00
341_R	358_V	3.617	1.00
57_L	343_I	3.499	1.00
84_S	87_A	3.209	1.00
145_D	148_T	3.193	1.00
35_L	95_E	3.048	1.00
283_Y	306_E	3.018	1.00
127_Q	130_A	3.018	1.00
265_E	271_L	2.880	1.00
49_V	294_M	2.873	1.00
77_R	80_E	2.788	1.00
22_E	60_K	2.787	1.00
425_D	429_A	2.782	1.00
101_D	107_R	2.719	1.00
131_K	244_C	2.690	1.00
55_R	106_L	2.675	1.00
133_H	148_T	2.673	1.00
385_R	389_A	2.651	1.00
81_N	91_R	2.593	1.00
145_D	176_R	2.566	1.00
127_Q	131_K	2.422	1.00
340_A	344_E	2.335	1.00
188_K	192_P	2.328	1.00
86_V	90_D	2.279	1.00
95_E	98_K	2.262	1.00
94_A	98_K	2.245	1.00
139_N	175_K	2.195	1.00
123_E	127_Q	2.194	1.00
351_N	354_E	2.193	1.00
344_E	349_D	2.188	1.00
124_L	245_A	2.140	1.00
51_A	55_R	2.112	1.00
83_E	91_R	2.104	1.00
53_Y	57_L	2.093	1.00
346_M	394_L	2.040	1.00
97_H	101_D	2.012	1.00
54_L	57_L	2.009	1.00
345_A	354_E	1.997	1.00
222_D	251_V	1.994	1.00
182_V	185_K	1.987	1.00
83_E	87_A	1.964	1.00
358_V	361_D	1.952	1.00
141_D	175_K	1.894	1.00
195_P	200_A	1.893	1.00
421_Q	425_D	1.841	1.00
162_Q	165_A	1.824	1.00
279_D	282_K	1.795	1.00
47_F	225_G	1.792	1.00
102_A	282_K	1.786	1.00
104_N	397_E	1.776	1.00
51_A	61_L	1.752	1.00
98_K	102_A	1.736	1.00
83_E	88_M	1.711	1.00
120_E	215_K	1.674	1.00
418_A	422_Q	1.656	1.00
345_A	358_V	1.656	1.00
337_A	341_R	1.644	1.00
206_H	209_C	1.639	1.00
90_D	94_A	1.625	1.00
213_N	216_Q	1.624	1.00
417_E	421_Q	1.615	1.00
278_R	282_K	1.611	1.00
219_N	242_S	1.605	1.00
50_V	350_F	1.604	1.00
112_P	115_T	1.569	1.00
128_L	244_C	1.557	1.00
338_F	362_M	1.533	1.00
343_I	348_D	1.526	1.00
391_L	399_E	1.525	1.00
280_V	289_V	1.523	1.00
339_E	386_K	1.519	1.00
53_Y	343_I	1.505	1.00
206_H	213_N	1.487	1.00
306_E	310_K	1.477	1.00
208_E	211_A	1.455	1.00
111_E	114_A	1.443	1.00
75_I	79_N	1.442	1.00
252_N	350_F	1.441	1.00
323_L	384_L	1.438	1.00
201_G	206_H	1.425	1.00
44_F	100_F	1.423	1.00
209_C	213_N	1.414	1.00
418_A	421_Q	1.413	1.00
168_R	171_V	1.409	1.00
94_A	97_H	1.404	1.00
203_P	206_H	1.402	1.00
192_P	196_S	1.393	1.00
262_V	305_S	1.391	1.00
184_W	187_S	1.381	1.00
54_L	348_D	1.366	1.00
412_E	415_E	1.366	1.00
147_P	177_N	1.364	1.00
210_S	213_N	1.364	1.00
202_R	206_H	1.354	1.00
19_H	24_G	1.349	1.00
212_M	216_Q	1.348	1.00
336_E	339_E	1.346	1.00
77_R	81_N	1.335	1.00
288_T	313_R	1.322	1.00
374_M	377_A	1.321	1.00
276_T	279_D	1.320	1.00
208_E	213_N	1.319	1.00
193_S	199_G	1.316	1.00
339_E	343_I	1.311	1.00
87_A	91_R	1.309	1.00
366_V	383_H	1.305	1.00
386_K	389_A	1.303	1.00
211_A	215_K	1.297	1.00
341_R	344_E	1.292	1.00
188_K	191_E	1.291	1.00
102_A	281_L	1.285	1.00
323_L	402_L	1.276	1.00
67_I	93_I	1.273	1.00
205_W	208_E	1.272	1.00
76_K	80_E	1.269	1.00
159_D	162_Q	1.267	1.00
26_Y	29_G	1.267	1.00
202_R	205_W	1.264	1.00
45_V	293_L	1.262	1.00
25_M	51_A	1.252	1.00
204_G	209_C	1.251	1.00
151_T	154_V	1.251	1.00
355_A	394_L	1.243	1.00
207_I	210_S	1.242	1.00
208_E	212_M	1.234	1.00
136_V	177_N	1.234	1.00
192_P	195_P	1.233	1.00
194_W	198_W	1.226	1.00
127_Q	245_A	1.225	1.00
67_I	97_H	1.218	1.00
279_D	283_Y	1.216	1.00
56_F	389_A	1.212	1.00
211_A	216_Q	1.211	1.00
382_S	386_K	1.207	1.00
339_E	390_V	1.203	1.00
88_M	92_M	1.187	1.00
318_R	363_A	1.186	1.00
209_C	212_M	1.180	1.00
424_L	428_K	1.178	1.00
193_S	200_A	1.178	1.00
206_H	212_M	1.175	1.00
212_M	217_L	1.174	1.00
206_H	210_S	1.173	1.00
190_G	193_S	1.173	1.00
381_A	385_R	1.167	1.00
43_T	257_S	1.164	1.00
19_H	22_E	1.163	1.00
409_D	412_E	1.153	1.00
197_P	200_A	1.150	1.00
219_N	248_G	1.150	1.00
316_L	395_E	1.148	1.00
346_M	355_A	1.143	1.00
202_R	210_S	1.140	1.00
98_K	101_D	1.140	1.00
97_H	107_R	1.134	1.00
126_E	129_I	1.133	1.00
201_G	205_W	1.133	1.00
406_A	409_D	1.132	1.00
204_G	207_I	1.130	1.00
44_F	105_I	1.129	1.00
342_F	355_A	1.127	1.00
91_R	95_E	1.127	1.00
41_G	103_L	1.127	1.00
212_M	215_K	1.118	1.00
413_V	417_E	1.118	1.00
206_H	215_K	1.117	1.00
117_H	216_Q	1.115	1.00
425_D	428_K	1.115	1.00
211_A	214_C	1.114	1.00
262_V	307_E	1.114	1.00
69_D	113_R	1.113	1.00
209_C	216_Q	1.113	1.00
102_A	278_R	1.108	1.00
338_F	358_V	1.096	1.00
213_N	217_L	1.093	1.00
141_D	173_D	1.090	1.00
117_H	120_E	1.090	1.00
21_G	59_Y	1.089	1.00
53_Y	346_M	1.084	1.00
201_G	204_G	1.082	1.00
193_S	196_S	1.081	1.00
423_R	427_R	1.079	1.00
133_H	186_M	1.079	1.00
206_H	216_Q	1.078	1.00
368_R	372_E	1.077	1.00
342_F	346_M	1.076	1.00
307_E	310_K	1.076	1.00
283_Y	310_K	1.075	1.00
98_K	278_R	1.075	1.00
123_E	126_E	1.074	1.00
210_S	217_L	1.071	1.00
35_L	278_R	1.070	1.00
189_E	193_S	1.066	1.00
194_W	197_P	1.066	1.00
51_A	106_L	1.066	1.00
235_H	253_Y	1.065	1.00
422_Q	426_A	1.059	1.00
202_R	207_I	1.057	1.00
97_H	111_E	1.054	1.00
207_I	213_N	1.051	1.00
421_Q	424_L	1.044	1.00
287_E	320_Y	1.038	1.00
133_H	244_C	1.038	1.00
158_Q	163_L	1.035	1.00
183_L	186_M	1.035	1.00
90_D	113_R	1.030	1.00
153_G	156_S	1.030	1.00
322_A	363_A	1.027	1.00
307_E	311_Q	1.026	1.00
363_A	387_L	1.026	1.00
36_C	40_H	1.023	1.00
414_A	418_A	1.021	1.00
292_F	308_N	1.016	1.00
261_M	303_N	1.016	1.00
81_N	88_M	1.014	1.00
93_I	97_H	1.014	1.00
23_V	59_Y	1.011	1.00
264_R	303_N	1.008	1.00
190_G	194_W	1.006	1.00
204_G	210_S	1.005	1.00
207_I	212_M	1.005	1.00
341_R	345_A	1.005	1.00
87_A	90_D	1.003	1.00
354_E	357_S	1.002	1.00
386_K	390_V	0.996	1.00
170_D	173_D	0.988	1.00
52_R	396_Q	0.987	1.00
218_G	222_D	0.986	1.00
74_I	85_F	0.983	1.00
393_L	396_Q	0.978	1.00
390_V	393_L	0.977	1.00
160_L	163_L	0.977	1.00
315_A	360_F	0.976	1.00
34_D	40_H	0.976	1.00
205_W	212_M	0.975	1.00
182_V	186_M	0.974	1.00
313_R	317_E	0.973	1.00
322_A	366_V	0.970	1.00
60_K	218_G	0.969	1.00
56_F	392_G	0.969	1.00
172_V	175_K	0.968	1.00
169_V	172_V	0.967	1.00
202_R	209_C	0.964	1.00
209_C	217_L	0.962	1.00
152_Y	155_L	0.961	1.00
202_R	213_N	0.957	1.00
330_V	381_A	0.957	1.00
388_S	402_L	0.956	1.00
30_I	33_Y	0.954	1.00
210_S	215_K	0.953	1.00
99_D	278_R	0.952	1.00
206_H	211_A	0.951	1.00
187_S	191_E	0.950	1.00
345_A	355_A	0.946	1.00
408_A	411_S	0.944	1.00
168_R	172_V	0.942	1.00
201_G	209_C	0.931	1.00
193_S	197_P	0.929	1.00
203_P	213_N	0.929	1.00
267_M	273_N	0.927	1.00
194_W	199_G	0.925	1.00
391_L	395_E	0.920	1.00
50_V	54_L	0.920	1.00
336_E	340_A	0.913	1.00
426_A	429_A	0.910	1.00
189_E	194_W	0.909	1.00
407_Q	410_D	0.908	1.00
419_L	422_Q	0.907	1.00
161_D	164_Q	0.907	1.00
189_E	192_P	0.907	1.00
414_A	417_E	0.902	1.00
202_R	211_A	0.899	1.00
207_I	211_A	0.895	1.00
205_W	213_N	0.895	1.00
204_G	208_E	0.887	1.00
428_K	432_W	0.886	1.00
29_G	33_Y	0.885	1.00
196_S	199_G	0.885	1.00
189_E	243_T	0.884	1.00
411_S	414_A	0.884	1.00
120_E	123_E	0.883	1.00
128_L	241_Q	0.882	1.00
205_W	216_Q	0.878	1.00
392_G	399_E	0.870	1.00
92_M	95_E	0.870	1.00
357_S	361_D	0.869	1.00
147_P	169_V	0.869	1.00
49_V	346_M	0.868	1.00
108_P	111_E	0.868	1.00
206_H	214_C	0.864	1.00
356_Y	394_L	0.864	1.00
341_R	361_D	0.856	1.00
128_L	131_K	0.856	1.00
210_S	216_Q	0.851	1.00
281_L	286_A	0.849	1.00
175_K	178_P	0.848	1.00
45_V	105_I	0.847	1.00
201_G	212_M	0.846	1.00
139_N	177_N	0.845	1.00
342_F	359_L	0.843	1.00
202_R	208_E	0.842	1.00
395_E	398_P	0.840	1.00
205_W	217_L	0.838	1.00
119_A	123_E	0.833	1.00
209_C	215_K	0.831	1.00
43_T	256_H	0.829	1.00
204_G	211_A	0.828	1.00
122_I	126_E	0.827	1.00
159_D	164_Q	0.827	1.00
262_V	274_F	0.825	1.00
119_A	122_I	0.824	1.00
171_V	175_K	0.823	1.00
337_A	340_A	0.821	1.00
202_R	215_K	0.818	1.00
34_D	77_R	0.817	1.00
378_N	382_S	0.814	1.00
27_V	225_G	0.813	1.00
342_F	390_V	0.812	1.00
49_V	352_T	0.811	1.00
181_F	185_K	0.810	1.00
310_K	313_R	0.810	1.00
365_E	368_R	0.809	1.00
169_V	173_D	0.808	1.00
42_R	302_L	0.803	1.00
267_M	274_F	0.800	1.00
388_S	403_Q	0.799	1.00
53_Y	348_D	0.797	1.00
249_Q	252_N	0.795	1.00
231_M	255_M	0.792	1.00
345_A	349_D	0.790	1.00
424_L	427_R	0.788	1.00
47_F	63_Y	0.786	1.00
410_D	413_V	0.784	1.00
285_D	288_T	0.782	1.00
201_G	213_N	0.781	1.00
201_G	207_I	0.781	1.00
206_H	217_L	0.780	1.00
213_N	221_F	0.780	1.00
182_V	187_S	0.779	1.00
183_L	187_S	0.779	1.00
345_A	351_N	0.777	1.00
205_W	210_S	0.777	1.00
57_L	348_D	0.774	1.00
248_G	251_V	0.769	1.00
81_N	84_S	0.768	1.00
180_D	183_L	0.768	1.00
271_L	274_F	0.767	1.00
139_N	174_D	0.764	1.00
319_L	388_S	0.764	1.00
196_S	200_A	0.764	1.00
202_R	216_Q	0.763	1.00
338_F	342_F	0.760	1.00
129_I	134_A	0.753	1.00
48_D	52_R	0.753	1.00
194_W	200_A	0.752	1.00
338_F	341_R	0.752	1.00
207_I	216_Q	0.752	1.00
195_P	198_W	0.750	1.00
35_L	92_M	0.749	1.00
201_G	208_E	0.747	1.00
415_E	431_D	0.747	1.00
202_R	217_L	0.746	1.00
114_A	121_I	0.745	1.00
415_E	418_A	0.745	1.00
420_I	424_L	0.744	1.00
74_I	89_V	0.744	1.00
158_Q	161_D	0.743	1.00
35_L	99_D	0.742	1.00
308_N	311_Q	0.742	1.00
204_G	216_Q	0.741	1.00
220_H	252_N	0.739	1.00
36_C	99_D	0.738	1.00
202_R	212_M	0.736	1.00
341_R	354_E	0.732	1.00
415_E	419_L	0.732	1.00
201_G	216_Q	0.732	1.00
52_R	106_L	0.732	1.00
50_V	352_T	0.732	1.00
398_P	401_F	0.731	1.00
144_F	149_D	0.731	1.00
295_S	356_Y	0.730	1.00
291_Y	312_A	0.726	1.00
51_A	63_Y	0.724	1.00
413_V	416_I	0.724	1.00
223_I	254_W	0.723	1.00
382_S	385_R	0.722	1.00
205_W	215_K	0.721	1.00
319_L	363_A	0.720	1.00
192_P	198_W	0.719	1.00
257_S	260_V	0.719	1.00
210_S	214_C	0.718	1.00
342_F	358_V	0.717	1.00
201_G	217_L	0.714	1.00
190_G	196_S	0.713	1.00
422_Q	425_D	0.712	1.00
359_L	391_L	0.711	1.00
203_P	210_S	0.710	1.00
209_C	214_C	0.710	1.00
263_D	303_N	0.708	1.00
146_V	172_V	0.708	1.00
191_E	194_W	0.707	1.00
91_R	94_A	0.707	1.00
397_E	400_A	0.704	1.00
100_F	105_I	0.704	1.00
388_S	399_E	0.697	1.00
371_A	374_M	0.696	1.00
110_M	116_H	0.696	1.00
160_L	164_Q	0.694	1.00
219_N	222_D	0.693	1.00
211_A	217_L	0.693	1.00
417_E	424_L	0.692	1.00
93_I	113_R	0.691	1.00
208_E	215_K	0.690	1.00
228_S	259_M	0.690	1.00
71_D	75_I	0.690	1.00
178_P	182_V	0.690	1.00
204_G	213_N	0.689	1.00
226_G	235_H	0.689	1.00
325_G	371_A	0.689	1.00
27_V	47_F	0.688	1.00
310_K	314_A	0.686	1.00
201_G	210_S	0.684	1.00
50_V	223_I	0.682	1.00
408_A	412_E	0.682	1.00
296_G	302_L	0.681	1.00
325_G	329_T	0.680	1.00
94_A	101_D	0.680	1.00
77_R	88_M	0.679	1.00
40_H	44_F	0.678	1.00
214_C	246_H	0.676	1.00
291_Y	356_Y	0.676	1.00
396_Q	399_E	0.675	1.00
161_D	165_A	0.674	1.00
22_E	62_K	0.672	1.00
176_R	181_F	0.672	1.00
223_I	252_N	0.671	1.00
409_D	413_V	0.669	1.00
392_G	400_A	0.668	1.00
420_I	423_R	0.667	1.00
41_G	277_V	0.667	1.00
413_V	424_L	0.667	1.00
143_M	173_D	0.661	1.00
291_Y	315_A	0.656	1.00
90_D	93_I	0.651	1.00
109_D	115_T	0.651	1.00
205_W	211_A	0.649	1.00
416_I	419_L	0.649	1.00
131_K	247_D	0.649	1.00
228_S	231_M	0.648	1.00
316_L	398_P	0.648	1.00
168_R	173_D	0.648	1.00
97_H	109_D	0.647	1.00
292_F	312_A	0.646	1.00
208_E	216_Q	0.646	1.00
167_A	196_S	0.645	1.00
188_K	193_S	0.644	1.00
45_V	294_M	0.644	1.00
104_N	286_A	0.642	1.00
201_G	211_A	0.642	1.00
354_E	358_V	0.642	1.00
166_G	171_V	0.641	1.00
38_I	267_M	0.641	1.00
393_L	398_P	0.641	1.00
383_H	386_K	0.640	1.00
193_S	198_W	0.639	1.00
157_R	161_D	0.637	1.00
338_F	390_V	0.635	1.00
24_G	62_K	0.634	1.00
158_Q	164_Q	0.634	1.00
368_R	371_A	0.633	1.00
171_V	174_D	0.633	1.00
38_I	274_F	0.630	1.00
279_D	306_E	0.628	1.00
181_F	184_W	0.627	1.00
205_W	209_C	0.627	1.00
291_Y	295_S	0.626	1.00
264_R	272_G	0.625	1.00
388_S	394_L	0.624	1.00
93_I	111_E	0.622	1.00
142_V	151_T	0.620	1.00
427_R	432_W	0.620	1.00
426_A	431_D	0.619	1.00
81_N	92_M	0.618	1.00
406_A	411_S	0.618	1.00
262_V	303_N	0.617	1.00
242_S	246_H	0.615	1.00
203_P	207_I	0.615	1.00
26_Y	33_Y	0.615	1.00
321_T	325_G	0.614	1.00
24_G	222_D	0.613	1.00
208_E	214_C	0.612	1.00
308_N	312_A	0.611	1.00
35_L	276_T	0.610	1.00
140_G	180_D	0.609	1.00
153_G	157_R	0.608	1.00
195_P	199_G	0.608	1.00
295_S	312_A	0.608	1.00
45_V	49_V	0.607	1.00
419_L	429_A	0.606	1.00
23_V	26_Y	0.605	1.00
267_M	275_F	0.605	1.00
291_Y	395_E	0.602	1.00
23_V	28_C	0.601	1.00
337_A	413_V	0.601	1.00
268_S	271_L	0.601	1.00
118_I	122_I	0.600	1.00
243_T	249_Q	0.600	1.00
181_F	186_M	0.600	1.00
188_K	198_W	0.600	1.00
224_H	238_E	0.598	1.00
411_S	415_E	0.598	1.00
178_P	181_F	0.598	1.00
159_D	163_L	0.597	1.00
152_Y	157_R	0.597	1.00
407_Q	413_V	0.597	1.00
136_V	139_N	0.596	1.00
203_P	209_C	0.596	1.00
161_D	170_D	0.596	1.00
188_K	195_P	0.593	1.00
46_A	225_G	0.593	1.00
258_G	261_M	0.593	1.00
62_K	110_M	0.590	1.00
65_R	111_E	0.589	1.00
50_V	255_M	0.586	1.00
385_R	388_S	0.586	1.00
325_G	370_K	0.585	1.00
188_K	194_W	0.583	1.00
176_R	179_M	0.583	1.00
135_Y	182_V	0.582	1.00
218_G	221_F	0.581	1.00
110_M	216_Q	0.581	1.00
294_M	356_Y	0.580	0.99
185_K	188_K	0.580	0.99
173_D	176_R	0.579	0.99
412_E	416_I	0.579	0.99
383_H	387_L	0.579	0.99
204_G	217_L	0.578	0.99
381_A	384_L	0.577	0.99
284_Y	310_K	0.577	0.99
167_A	171_V	0.577	0.99
340_A	343_I	0.576	0.99
24_G	221_F	0.575	0.99
32_V	44_F	0.575	0.99
223_I	350_F	0.575	0.99
404_S	407_Q	0.574	0.99
379_A	383_H	0.568	0.99
28_C	33_Y	0.567	0.99
214_C	217_L	0.567	0.99
180_D	185_K	0.566	0.99
344_E	348_D	0.565	0.99
99_D	276_T	0.564	0.99
228_S	301_Q	0.564	0.99
274_F	277_V	0.563	0.99
392_G	403_Q	0.562	0.99
78_A	85_F	0.560	0.99
412_E	420_I	0.560	0.99
110_M	114_A	0.559	0.99
24_G	28_C	0.556	0.99
145_D	167_A	0.556	0.99
203_P	211_A	0.555	0.99
43_T	47_F	0.554	0.99
407_Q	412_E	0.552	0.99
413_V	420_I	0.550	0.99
201_G	214_C	0.547	0.99
397_E	401_F	0.547	0.99
176_R	180_D	0.546	0.99
329_T	333_A	0.546	0.99
222_D	252_N	0.546	0.99
419_L	423_R	0.546	0.99
131_K	246_H	0.545	0.99
160_L	165_A	0.541	0.99
311_Q	315_A	0.540	0.99
154_V	157_R	0.539	0.99
204_G	215_K	0.538	0.99
169_V	175_K	0.538	0.99
55_R	109_D	0.538	0.99
202_R	214_C	0.537	0.99
265_E	272_G	0.537	0.99
388_S	395_E	0.537	0.99
189_E	198_W	0.536	0.99
166_G	169_V	0.534	0.99
280_V	306_E	0.533	0.99
413_V	421_Q	0.532	0.99
232_F	236_E	0.524	0.99
95_E	278_R	0.524	0.99
416_I	420_I	0.524	0.99
389_A	392_G	0.523	0.99
133_H	185_K	0.522	0.99
423_R	431_D	0.522	0.99
157_R	160_L	0.521	0.99
175_K	181_F	0.520	0.99
203_P	216_Q	0.518	0.99
305_S	308_N	0.517	0.99
428_K	431_D	0.517	0.99
152_Y	156_S	0.516	0.99
76_K	79_N	0.515	0.99
410_D	414_A	0.513	0.99
262_V	306_E	0.513	0.99
158_Q	162_Q	0.513	0.99
420_I	426_A	0.513	0.99
355_A	358_V	0.512	0.99
426_A	430_K	0.511	0.99
326_T	330_V	0.510	0.99
128_L	134_A	0.510	0.99
20_A	60_K	0.509	0.99
155_L	158_Q	0.509	0.99
180_D	184_W	0.509	0.99
373_D	376_A	0.508	0.99
152_Y	159_D	0.507	0.99
62_K	109_D	0.506	0.99
417_E	431_D	0.505	0.99
424_L	431_D	0.503	0.99
324_R	327_D	0.501	0.99
46_A	294_M	0.501	0.99
51_A	109_D	0.501	0.99
409_D	415_E	0.501	0.99
388_S	393_L	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1li5A	1	0.8373	100	0.186	Contact Map
3tqoA	1	0.8308	100	0.199	Contact Map
3sp1A	1	0.9024	100	0.242	Contact Map
1gaxA	1	0.9935	100	0.294	Contact Map
3ziuA	1	0.9588	100	0.297	Contact Map
1rqgA	2	0.9479	100	0.31	Contact Map
3kflA	1	0.9089	100	0.315	Contact Map
1ffyA	1	0.9913	100	0.315	Contact Map
4arcA	1	0.9262	100	0.334	Contact Map
2x1lA	1	0.898	100	0.337	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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