SRMB - ECOLI - GREMLIN Contacts

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SRMB - ATP-dependent RNA helicase SrmB

UniProt:	P21507	Sequences: MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10975
Length:	444 (359)
Sequences:	38378 (21923)
Seq/√Len:	1157.0

ECOLI - SRMB DEAD RECQ DBPA RHLE RHLB RECG YFJK YEJH RAPA
BACSU - CSHA DBPA CSHB RECG RECQ RECS YPRA YFML COMFA YQHH YWQA
HALSA - HELS Q9HN80 Q9HNB2 RAD25 Q9HMW5 O52003 Q9HQA5 O51997
SULSO - Q981C8 HELS HELX Q97X74 Q97WT0 Q97Y93 Q97WW1 Q980C0 Q97X64 Q97ZF9 Q97YC4 Q97ZF3 Q97ZV2 Q97YQ4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
59_L	96_A	4.377	1.00
62_A	79_I	3.898	1.00
38_A	185_L	3.464	1.00
276_C	299_V	3.214	1.00
293_R	298_R	3.164	1.00
83_T	92_V	3.029	1.00
292_K	296_E	2.771	1.00
289_E	293_R	2.734	1.00
258_R	281_E	2.688	1.00
255_V	261_V	2.658	1.00
132_A	137_L	2.648	1.00
30_I	46_G	2.587	1.00
265_A	275_N	2.518	1.00
274_N	300_N	2.507	1.00
93_S	97_R	2.467	1.00
21_D	102_H	2.438	1.00
276_C	293_R	2.424	1.00
240_V	271_A	2.412	1.00
262_H	277_Y	2.318	1.00
265_A	277_Y	2.307	1.00
265_A	269_R	2.267	1.00
168_A	171_I	2.247	1.00
108_A	127_Q	2.220	1.00
140_Y	145_N	2.201	1.00
336_I	348_A	2.179	1.00
168_A	172_E	2.177	1.00
42_R	208_V	2.134	1.00
93_S	107_I	2.123	1.00
255_V	264_L	2.056	1.00
251_S	319_H	2.003	1.00
255_V	303_V	1.997	1.00
78_R	152_E	1.985	1.00
273_I	301_V	1.973	1.00
288_N	292_K	1.961	1.00
106_D	128_D	1.946	1.00
249_T	318_S	1.926	1.00
93_S	109_T	1.921	1.00
261_V	279_E	1.899	1.00
276_C	290_A	1.889	1.00
169_Q	172_E	1.882	1.00
260_R	324_D	1.881	1.00
79_I	153_T	1.873	1.00
65_H	153_T	1.858	1.00
95_H	98_E	1.855	1.00
167_F	171_I	1.819	1.00
304_A	308_A	1.803	1.00
267_W	271_A	1.797	1.00
159_A	186_L	1.795	1.00
319_H	349_I	1.794	1.00
238_L	241_H	1.781	1.00
283_V	286_K	1.775	1.00
268_L	303_V	1.769	1.00
325_M	350_S	1.733	1.00
224_Q	336_I	1.727	1.00
24_F	56_A	1.725	1.00
115_A	118_N	1.723	1.00
236_T	267_W	1.715	1.00
96_A	129_I	1.704	1.00
261_V	277_Y	1.699	1.00
64_Q	68_D	1.673	1.00
223_H	347_T	1.668	1.00
58_Y	187_F	1.651	1.00
308_A	312_I	1.638	1.00
225_W	347_T	1.636	1.00
322_N	336_I	1.628	1.00
38_A	44_V	1.614	1.00
197_Q	201_E	1.612	1.00
58_Y	155_I	1.603	1.00
39_L	64_Q	1.593	1.00
172_E	202_R	1.580	1.00
76_P	150_A	1.574	1.00
316_D	344_R	1.565	1.00
46_G	187_F	1.555	1.00
90_M	288_N	1.553	1.00
250_R	316_D	1.553	1.00
170_D	173_H	1.550	1.00
117_M	121_E	1.530	1.00
160_D	310_R	1.521	1.00
78_R	128_D	1.518	1.00
264_L	323_F	1.516	1.00
62_A	155_I	1.498	1.00
251_S	321_F	1.484	1.00
260_R	263_E	1.477	1.00
224_Q	332_Y	1.473	1.00
34_A	57_A	1.468	1.00
257_K	260_R	1.457	1.00
251_S	301_V	1.454	1.00
88_L	311_G	1.450	1.00
239_L	323_F	1.448	1.00
239_L	321_F	1.446	1.00
49_P	52_T	1.437	1.00
96_A	107_I	1.436	1.00
320_V	339_T	1.436	1.00
219_R	222_I	1.435	1.00
37_P	44_V	1.433	1.00
161_R	164_D	1.431	1.00
32_A	36_P	1.428	1.00
326_P	332_Y	1.425	1.00
62_A	153_T	1.422	1.00
360_L	364_G	1.410	1.00
90_M	94_D	1.406	1.00
154_L	184_T	1.399	1.00
244_K	271_A	1.385	1.00
282_M	290_A	1.374	1.00
240_V	244_K	1.373	1.00
108_A	122_V	1.372	1.00
138_L	173_H	1.371	1.00
197_Q	209_E	1.369	1.00
94_D	98_E	1.362	1.00
89_A	109_T	1.356	1.00
322_N	350_S	1.355	1.00
265_A	303_V	1.346	1.00
142_K	173_H	1.340	1.00
269_R	275_N	1.337	1.00
80_L	151_V	1.332	1.00
21_D	101_K	1.330	1.00
37_P	208_V	1.301	1.00
83_T	89_A	1.293	1.00
322_N	335_R	1.288	1.00
264_L	303_V	1.287	1.00
38_A	61_P	1.287	1.00
82_L	132_A	1.284	1.00
82_L	137_L	1.284	1.00
169_Q	173_H	1.278	1.00
19_L	24_F	1.275	1.00
127_Q	130_V	1.273	1.00
65_H	152_E	1.270	1.00
290_A	299_V	1.268	1.00
22_K	98_E	1.260	1.00
108_A	130_V	1.240	1.00
293_R	299_V	1.227	1.00
20_Q	25_T	1.225	1.00
242_L	349_I	1.220	1.00
141_I	177_E	1.211	1.00
241_H	245_Q	1.205	1.00
286_K	290_A	1.202	1.00
121_E	124_S	1.194	1.00
319_H	347_T	1.192	1.00
328_S	331_T	1.188	1.00
253_V	301_V	1.187	1.00
261_V	303_V	1.186	1.00
37_P	40_D	1.180	1.00
173_H	177_E	1.176	1.00
224_Q	227_Y	1.176	1.00
286_K	289_E	1.163	1.00
195_A	198_D	1.157	1.00
250_R	297_G	1.152	1.00
235_K	324_D	1.146	1.00
248_A	251_S	1.145	1.00
154_L	175_A	1.139	1.00
175_A	178_T	1.136	1.00
242_L	321_F	1.133	1.00
95_H	313_D	1.132	1.00
66_L	79_I	1.128	1.00
262_H	279_E	1.128	1.00
171_I	174_I	1.124	1.00
278_L	308_A	1.122	1.00
29_A	33_A	1.121	1.00
238_L	242_L	1.116	1.00
93_S	131_V	1.115	1.00
94_D	97_R	1.111	1.00
58_Y	92_V	1.100	1.00
55_T	92_V	1.097	1.00
96_A	131_V	1.093	1.00
294_L	302_L	1.089	1.00
374_R	378_E	1.069	1.00
242_L	245_Q	1.068	1.00
77_P	152_E	1.067	1.00
222_I	340_A	1.065	1.00
282_M	286_K	1.063	1.00
35_I	39_L	1.061	1.00
279_E	282_M	1.055	1.00
375_V	378_E	1.054	1.00
119_H	122_V	1.054	1.00
240_V	267_W	1.049	1.00
63_L	100_A	1.046	1.00
65_H	183_Q	1.044	1.00
48_A	52_T	1.039	1.00
236_T	271_A	1.038	1.00
278_L	307_V	1.030	1.00
172_E	176_G	1.024	1.00
237_A	240_V	1.023	1.00
244_K	273_I	1.021	1.00
290_A	302_L	1.017	1.00
236_T	240_V	1.011	1.00
117_M	120_A	1.009	1.00
120_A	124_S	1.002	1.00
47_S	211_S	1.001	1.00
377_D	380_R	0.996	1.00
378_E	381_P	0.996	1.00
236_T	323_F	0.989	1.00
359_L	362_K	0.984	1.00
225_W	228_R	0.984	1.00
289_E	292_K	0.983	1.00
120_A	145_N	0.971	1.00
261_V	265_A	0.970	1.00
357_H	361_G	0.969	1.00
41_G	183_Q	0.968	1.00
36_P	40_D	0.965	1.00
266_N	269_R	0.964	1.00
248_A	300_N	0.947	1.00
173_H	176_G	0.947	1.00
297_G	300_N	0.943	1.00
29_A	32_A	0.937	1.00
34_A	46_G	0.934	1.00
91_Q	313_D	0.930	1.00
138_L	170_D	0.928	1.00
66_L	128_D	0.927	1.00
259_E	263_E	0.926	1.00
57_A	61_P	0.926	1.00
273_I	300_N	0.926	1.00
26_R	32_A	0.924	1.00
44_V	185_L	0.924	1.00
266_N	270_E	0.923	1.00
224_Q	229_A	0.922	1.00
56_A	95_H	0.916	1.00
46_G	185_L	0.916	1.00
171_I	175_A	0.915	1.00
362_K	365_R	0.912	1.00
254_F	335_R	0.900	1.00
362_K	366_Y	0.899	1.00
242_L	319_H	0.890	1.00
200_A	204_L	0.889	1.00
378_E	382_K	0.888	1.00
89_A	131_V	0.888	1.00
167_F	170_D	0.887	1.00
43_D	205_E	0.883	1.00
292_K	295_T	0.882	1.00
243_L	251_S	0.880	1.00
116_Y	120_A	0.878	1.00
226_Y	229_A	0.876	1.00
167_F	172_E	0.872	1.00
139_Q	143_E	0.871	1.00
221_K	345_K	0.868	1.00
224_Q	228_R	0.866	1.00
267_W	270_E	0.865	1.00
189_A	337_G	0.865	1.00
198_D	201_E	0.864	1.00
253_V	321_F	0.862	1.00
116_Y	143_E	0.860	1.00
252_I	304_A	0.858	1.00
153_T	183_Q	0.857	1.00
230_D	234_H	0.855	1.00
377_D	381_P	0.850	1.00
214_P	217_R	0.849	1.00
79_I	155_I	0.849	1.00
66_L	105_L	0.848	1.00
361_G	364_G	0.844	1.00
364_G	368_E	0.842	1.00
62_A	96_A	0.838	1.00
88_L	91_Q	0.836	1.00
119_H	123_F	0.836	1.00
309_A	331_T	0.835	1.00
236_T	263_E	0.832	1.00
160_D	334_H	0.829	1.00
62_A	129_I	0.824	1.00
213_N	216_T	0.823	1.00
322_N	326_P	0.822	1.00
95_H	99_L	0.820	1.00
306_D	335_R	0.820	1.00
284_Q	288_N	0.817	1.00
41_G	65_H	0.815	1.00
153_T	185_L	0.814	1.00
196_I	200_A	0.814	1.00
291_I	314_I	0.808	1.00
79_I	129_I	0.806	1.00
326_P	335_R	0.804	1.00
357_H	360_L	0.797	1.00
374_R	381_P	0.794	1.00
239_L	264_L	0.793	1.00
37_P	42_R	0.793	1.00
371_I	375_V	0.791	1.00
35_I	60_L	0.790	1.00
374_R	377_D	0.789	1.00
168_A	175_A	0.787	1.00
33_A	37_P	0.786	1.00
80_L	154_L	0.784	1.00
110_I	119_H	0.783	1.00
290_A	293_R	0.780	1.00
81_I	96_A	0.778	1.00
56_A	60_L	0.778	1.00
256_R	327_R	0.778	1.00
218_E	221_K	0.776	1.00
118_N	121_E	0.771	1.00
294_L	317_V	0.770	1.00
243_L	273_I	0.770	1.00
192_E	196_I	0.769	1.00
114_V	119_H	0.766	1.00
360_L	371_I	0.762	1.00
238_L	351_L	0.760	1.00
239_L	253_V	0.759	1.00
138_L	142_K	0.759	1.00
363_V	367_I	0.759	1.00
118_N	122_V	0.757	1.00
50_T	189_A	0.754	1.00
190_T	334_H	0.754	1.00
42_R	206_D	0.753	1.00
134_T	156_L	0.752	1.00
234_H	237_A	0.750	1.00
64_Q	67_L	0.749	1.00
85_T	310_R	0.748	1.00
132_A	146_F	0.748	1.00
61_P	153_T	0.747	1.00
148_C	151_V	0.747	1.00
155_I	185_L	0.747	1.00
223_H	345_K	0.745	1.00
377_D	382_K	0.745	1.00
285_G	289_E	0.742	1.00
360_L	363_V	0.742	1.00
67_L	78_R	0.741	1.00
197_Q	200_A	0.738	1.00
317_V	339_T	0.738	1.00
364_G	370_P	0.738	1.00
120_A	140_Y	0.737	1.00
237_A	241_H	0.737	1.00
45_L	191_L	0.737	1.00
67_L	103_T	0.736	1.00
179_R	182_K	0.736	1.00
262_H	266_N	0.732	1.00
274_N	299_V	0.731	1.00
363_V	366_Y	0.731	1.00
193_G	198_D	0.729	1.00
90_M	109_T	0.721	1.00
310_R	334_H	0.718	1.00
235_K	242_L	0.718	1.00
306_D	331_T	0.714	1.00
43_D	184_T	0.707	1.00
250_R	300_N	0.707	1.00
171_I	178_T	0.706	1.00
19_L	56_A	0.706	1.00
34_A	38_A	0.705	1.00
235_K	238_L	0.703	1.00
167_F	174_I	0.702	1.00
63_L	67_L	0.700	1.00
136_R	139_Q	0.698	1.00
240_V	273_I	0.697	1.00
37_P	210_V	0.696	1.00
36_P	39_L	0.695	1.00
172_E	175_A	0.694	1.00
375_V	379_L	0.693	1.00
204_L	207_P	0.693	1.00
46_G	57_A	0.692	1.00
212_A	216_T	0.690	1.00
76_P	128_D	0.690	1.00
227_Y	238_L	0.687	1.00
368_E	371_I	0.685	1.00
295_T	316_D	0.683	1.00
111_T	114_V	0.682	1.00
364_G	367_I	0.681	1.00
161_R	310_R	0.680	1.00
291_I	294_L	0.676	1.00
250_R	294_L	0.675	1.00
250_R	318_S	0.675	1.00
241_H	244_K	0.675	1.00
90_M	111_T	0.673	1.00
86_R	113_G	0.673	1.00
105_L	128_D	0.672	1.00
50_T	337_G	0.671	1.00
92_V	131_V	0.671	1.00
278_L	282_M	0.668	1.00
141_I	148_C	0.668	1.00
253_V	323_F	0.667	1.00
62_A	81_I	0.666	1.00
252_I	302_L	0.665	1.00
364_G	371_I	0.664	1.00
237_A	267_W	0.664	1.00
348_A	352_V	0.663	1.00
30_I	48_A	0.663	1.00
100_A	107_I	0.662	1.00
358_L	362_K	0.662	1.00
60_L	63_L	0.661	1.00
295_T	315_P	0.661	1.00
100_A	103_T	0.659	1.00
291_I	295_T	0.655	1.00
379_L	383_T	0.655	1.00
237_A	271_A	0.649	1.00
252_I	317_V	0.648	1.00
346_G	353_E	0.648	1.00
211_S	215_S	0.647	1.00
83_T	133_T	0.647	1.00
119_H	140_Y	0.645	1.00
260_R	323_F	0.643	1.00
356_D	360_L	0.643	1.00
85_T	135_G	0.641	1.00
188_S	191_L	0.640	1.00
211_S	214_P	0.639	1.00
380_R	383_T	0.638	1.00
262_H	281_E	0.637	1.00
374_R	379_L	0.636	1.00
236_T	264_L	0.636	1.00
263_E	267_W	0.635	1.00
365_R	368_E	0.635	1.00
119_H	136_R	0.629	1.00
121_E	125_E	0.627	1.00
360_L	370_P	0.627	1.00
379_L	382_K	0.626	1.00
229_A	238_L	0.626	1.00
216_T	220_K	0.625	1.00
287_R	291_I	0.620	1.00
106_D	126_N	0.620	1.00
217_R	220_K	0.619	1.00
169_Q	174_I	0.618	1.00
170_D	174_I	0.617	1.00
346_G	349_I	0.616	1.00
274_N	293_R	0.616	1.00
258_R	262_H	0.616	1.00
58_Y	83_T	0.614	1.00
174_I	178_T	0.610	1.00
208_V	211_S	0.610	1.00
80_L	132_A	0.609	1.00
43_D	186_L	0.609	1.00
77_P	151_V	0.608	1.00
369_E	372_K	0.608	1.00
65_H	68_D	0.607	1.00
353_E	356_D	0.606	1.00
253_V	303_V	0.604	1.00
277_Y	290_A	0.603	1.00
256_R	260_R	0.600	1.00
210_V	216_T	0.600	1.00
110_I	130_V	0.600	1.00
170_D	175_A	0.599	1.00
107_I	110_I	0.598	1.00
297_G	316_D	0.595	1.00
96_A	100_A	0.595	1.00
318_S	344_R	0.594	1.00
208_V	213_N	0.593	1.00
358_L	361_G	0.592	1.00
225_W	230_D	0.590	1.00
109_T	112_G	0.590	1.00
97_R	101_K	0.590	1.00
254_F	320_V	0.590	1.00
77_P	150_A	0.587	1.00
322_N	325_M	0.585	1.00
236_T	239_L	0.584	1.00
338_R	341_R	0.583	1.00
114_V	122_V	0.582	1.00
47_S	191_L	0.582	1.00
116_Y	119_H	0.581	1.00
208_V	212_A	0.581	1.00
56_A	99_L	0.578	1.00
90_M	93_S	0.576	1.00
256_R	324_D	0.576	1.00
371_I	374_R	0.575	1.00
364_G	373_A	0.575	1.00
43_D	183_Q	0.572	1.00
78_R	150_A	0.571	1.00
253_V	264_L	0.571	1.00
114_V	118_N	0.569	1.00
45_L	186_L	0.569	1.00
250_R	317_V	0.567	1.00
58_Y	61_P	0.566	1.00
213_N	217_R	0.565	1.00
277_Y	282_M	0.564	1.00
272_G	275_N	0.562	1.00
43_D	204_L	0.562	1.00
207_P	210_V	0.560	1.00
116_Y	140_Y	0.559	1.00
176_G	204_L	0.559	1.00
376_I	380_R	0.558	1.00
374_R	380_R	0.557	1.00
235_K	239_L	0.555	1.00
175_A	182_K	0.553	1.00
367_I	370_P	0.552	1.00
169_Q	176_G	0.549	1.00
87_E	278_L	0.549	1.00
214_P	218_E	0.548	1.00
225_W	349_I	0.546	1.00
218_E	222_I	0.545	1.00
249_T	319_H	0.543	1.00
216_T	219_R	0.543	1.00
89_A	111_T	0.541	1.00
63_L	103_T	0.541	1.00
19_L	23_G	0.539	1.00
159_A	191_L	0.539	1.00
132_A	136_R	0.539	1.00
192_E	195_A	0.539	1.00
28_T	342_A	0.538	1.00
226_Y	230_D	0.538	1.00
94_D	295_T	0.538	1.00
280_G	287_R	0.537	1.00
278_L	304_A	0.537	1.00
48_A	57_A	0.535	1.00
156_L	171_I	0.535	1.00
160_D	163_L	0.534	1.00
221_K	340_A	0.533	1.00
258_R	279_E	0.533	1.00
359_L	364_G	0.532	1.00
366_Y	369_E	0.532	1.00
243_L	268_L	0.532	1.00
361_G	365_R	0.528	1.00
122_V	127_Q	0.527	1.00
376_I	381_P	0.527	1.00
231_D	234_H	0.526	1.00
60_L	99_L	0.526	1.00
211_S	217_R	0.526	1.00
78_R	130_V	0.525	1.00
34_A	37_P	0.525	1.00
97_R	107_I	0.524	1.00
276_C	302_L	0.523	1.00
212_A	217_R	0.521	1.00
246_P	249_T	0.521	1.00
275_N	303_V	0.521	1.00
94_D	292_K	0.519	1.00
168_A	176_G	0.518	1.00
322_N	348_A	0.518	1.00
259_E	262_H	0.518	1.00
367_I	371_I	0.517	1.00
235_K	323_F	0.517	1.00
59_L	107_I	0.517	1.00
222_I	348_A	0.517	1.00
224_Q	231_D	0.515	1.00
332_Y	336_I	0.514	1.00
352_V	360_L	0.514	1.00
337_G	340_A	0.513	1.00
171_I	176_G	0.513	1.00
163_L	198_D	0.512	1.00
366_Y	370_P	0.512	1.00
376_I	379_L	0.512	1.00
252_I	339_T	0.511	1.00
27_P	35_I	0.511	1.00
172_E	178_T	0.510	1.00
27_P	60_L	0.509	1.00
290_A	294_L	0.508	1.00
87_E	307_V	0.508	1.00
311_G	338_R	0.507	1.00
363_V	368_E	0.507	1.00
299_V	302_L	0.506	1.00
86_R	284_Q	0.506	1.00
50_T	61_P	0.506	1.00
154_L	182_K	0.505	1.00
223_H	226_Y	0.505	1.00
359_L	363_V	0.504	1.00
254_F	339_T	0.504	1.00
198_D	202_R	0.502	1.00
209_E	212_A	0.502	1.00
68_D	78_R	0.501	1.00
35_I	61_P	0.500	1.00
260_R	264_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pxaA	1	0.8581	100	0.278	Contact Map
4c9bA	1	0.8446	100	0.278	Contact Map
4nhoA	1	0.8446	100	0.28	Contact Map
4ljyA	1	0.8874	100	0.28	Contact Map
3eiqA	1	0.8018	100	0.288	Contact Map
2db3A	1	0.8468	100	0.292	Contact Map
4d25A	1	0.8491	100	0.292	Contact Map
1fuuA	2	0.8401	100	0.298	Contact Map
1s2mA	1	0.8491	100	0.3	Contact Map
3fmpB	1	0.4617	100	0.303	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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