GLTP - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

GLTP - Proton glutamate symport protein

UniProt:	P21345	Sequences: MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPAGDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEMLPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVTVANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYSTASSESVLPRIIEKMEAYGAPVSITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10405
Length:	437 (392)
Sequences:	6299 (3698)
Seq/√Len:	186.8

ECOLI - GLTP YDJN DCTA SSTT
BACSU - GLTT DCTA GLTP TCYP
HALSA - Q9HHN5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
153_A	157_K	4.660	1.00
292_E	298_V	3.484	1.00
183_E	187_T	3.405	1.00
104_N	340_E	3.184	1.00
102_L	240_A	3.054	1.00
83_K	412_E	2.986	1.00
179_A	183_E	2.941	1.00
18_L	212_F	2.939	1.00
146_L	165_F	2.909	1.00
61_I	167_S	2.835	1.00
42_S	46_D	2.781	1.00
65_V	189_F	2.753	1.00
284_L	305_V	2.703	1.00
47_I	147_V	2.578	1.00
198_K	201_H	2.556	1.00
184_P	191_S	2.537	1.00
22_L	212_F	2.536	1.00
297_P	414_K	2.524	1.00
11_Q	205_R	2.507	1.00
61_I	65_V	2.434	1.00
410_K	417_R	2.418	1.00
336_S	339_Q	2.416	1.00
62_S	192_I	2.409	1.00
44_A	213_A	2.395	1.00
107_Q	110_A	2.373	1.00
7_S	10_W	2.317	1.00
297_P	409_A	2.293	1.00
271_L	399_V	2.273	1.00
170_F	195_T	2.261	1.00
238_H	392_A	2.194	1.00
235_L	239_F	2.178	1.00
178_P	182_R	2.154	1.00
91_I	252_V	2.137	1.00
141_G	145_S	2.129	1.00
87_Y	404_A	2.100	1.00
254_R	257_G	2.083	1.00
270_E	290_K	2.040	1.00
13_L	17_V	2.005	1.00
102_L	243_F	1.979	1.00
185_L	188_V	1.962	1.00
83_K	411_W	1.949	1.00
21_L	25_Y	1.920	1.00
149_T	153_A	1.884	1.00
327_I	378_G	1.883	1.00
181_H	194_E	1.880	1.00
101_T	105_V	1.875	1.00
296_A	406_L	1.873	1.00
241_I	392_A	1.858	1.00
97_I	101_T	1.838	1.00
62_S	196_M	1.828	1.00
106_F	236_L	1.824	1.00
70_G	190_R	1.817	1.00
103_A	325_I	1.817	1.00
243_F	247_V	1.814	1.00
184_P	187_T	1.806	1.00
291_M	402_A	1.789	1.00
55_I	203_V	1.789	1.00
386_D	393_R	1.775	1.00
15_A	212_F	1.775	1.00
159_E	162_P	1.767	1.00
228_W	232_K	1.765	1.00
185_L	191_S	1.762	1.00
289_E	293_A	1.754	1.00
108_P	329_Q	1.754	1.00
82_A	86_I	1.741	1.00
174_L	195_T	1.715	1.00
152_V	155_M	1.695	1.00
185_L	195_T	1.675	1.00
176_S	198_K	1.667	1.00
304_V	405_V	1.634	1.00
266_I	294_Y	1.628	1.00
296_A	409_A	1.621	1.00
106_F	239_F	1.605	1.00
103_A	322_I	1.603	1.00
79_R	412_E	1.601	1.00
256_C	410_K	1.599	1.00
15_A	19_G	1.595	1.00
267_L	402_A	1.582	1.00
151_I	166_F	1.559	1.00
327_I	374_I	1.557	1.00
102_L	236_L	1.556	1.00
262_I	265_R	1.543	1.00
334_D	338_W	1.534	1.00
241_I	396_L	1.534	1.00
287_I	402_A	1.533	1.00
390_D	394_T	1.503	1.00
231_A	235_L	1.495	1.00
47_I	144_L	1.491	1.00
152_V	156_A	1.482	1.00
292_E	301_T	1.466	1.00
253_A	403_L	1.463	1.00
240_A	318_L	1.436	1.00
113_D	332_G	1.421	1.00
69_A	186_V	1.420	1.00
22_L	26_L	1.414	1.00
331_Y	378_G	1.414	1.00
271_L	395_A	1.411	1.00
252_V	407_V	1.390	1.00
53_K	149_T	1.389	1.00
281_E	356_G	1.387	1.00
266_I	293_A	1.382	1.00
176_S	202_M	1.379	1.00
10_W	14_F	1.365	1.00
147_V	165_F	1.356	1.00
288_I	301_T	1.353	1.00
11_Q	15_A	1.350	1.00
68_I	168_V	1.344	1.00
46_D	50_H	1.342	1.00
60_V	160_M	1.339	1.00
337_I	341_I	1.332	1.00
188_V	191_S	1.332	1.00
190_R	194_E	1.326	1.00
173_G	199_V	1.325	1.00
61_I	155_M	1.325	1.00
54_M	166_F	1.305	1.00
145_S	159_E	1.299	1.00
27_H	220_A	1.294	1.00
297_P	300_I	1.286	1.00
84_T	304_V	1.284	1.00
409_A	415_F	1.273	1.00
259_S	262_I	1.272	1.00
66_V	189_F	1.266	1.00
170_F	192_I	1.259	1.00
300_I	409_A	1.245	1.00
236_L	322_I	1.244	1.00
184_P	188_V	1.240	1.00
50_H	149_T	1.240	1.00
174_L	185_L	1.239	1.00
267_L	399_V	1.233	1.00
251_I	255_L	1.232	1.00
310_S	313_L	1.230	1.00
173_G	202_M	1.227	1.00
201_H	289_E	1.226	1.00
202_M	206_Y	1.217	1.00
100_I	340_E	1.216	1.00
334_D	339_Q	1.211	1.00
229_P	232_K	1.207	1.00
261_W	265_R	1.206	1.00
16_M	215_I	1.203	1.00
324_A	343_L	1.198	1.00
246_L	250_G	1.197	1.00
234_V	385_V	1.195	1.00
287_I	305_V	1.191	1.00
409_A	413_H	1.190	1.00
55_I	200_T	1.184	1.00
253_A	258_L	1.167	1.00
138_G	141_G	1.161	1.00
254_R	259_S	1.160	1.00
168_V	172_L	1.159	1.00
101_T	104_N	1.156	1.00
196_M	200_T	1.152	1.00
217_V	221_N	1.151	1.00
274_A	394_T	1.150	1.00
362_F	383_A	1.144	1.00
113_D	116_Q	1.140	1.00
263_L	267_L	1.137	1.00
169_L	199_V	1.130	1.00
86_I	90_V	1.121	1.00
57_V	163_I	1.119	1.00
88_F	304_V	1.116	1.00
42_S	217_V	1.110	1.00
153_A	156_A	1.101	1.00
343_L	372_V	1.095	1.00
319_Y	386_D	1.094	1.00
269_D	293_A	1.092	1.00
134_S	137_H	1.079	1.00
177_L	191_S	1.074	1.00
284_L	309_Y	1.072	1.00
283_V	287_I	1.071	1.00
177_L	182_R	1.071	1.00
232_K	235_L	1.068	1.00
47_I	51_L	1.065	1.00
91_I	314_D	1.065	1.00
206_Y	209_V	1.064	1.00
257_G	410_K	1.062	1.00
76_Q	299_S	1.060	1.00
314_D	351_S	1.058	1.00
44_A	206_Y	1.057	1.00
90_V	94_V	1.054	1.00
245_A	396_L	1.053	1.00
185_L	189_F	1.050	1.00
179_A	182_R	1.047	1.00
62_S	66_V	1.045	1.00
287_I	398_V	1.044	1.00
21_L	24_S	1.039	1.00
258_L	415_F	1.038	1.00
244_F	318_L	1.037	1.00
409_A	414_K	1.037	1.00
341_I	345_L	1.034	1.00
151_I	156_A	1.034	1.00
244_F	248_V	1.032	1.00
296_A	301_T	1.028	1.00
97_I	341_I	1.020	1.00
64_L	164_I	1.019	1.00
278_A	387_R	1.019	1.00
187_T	191_S	1.018	1.00
109_G	329_Q	1.015	1.00
116_Q	119_T	1.010	1.00
291_M	305_V	1.009	0.99
80_I	300_I	1.008	0.99
410_K	413_H	1.005	0.99
319_Y	393_R	1.003	0.99
97_I	344_V	1.002	0.99
291_M	296_A	1.000	0.99
177_L	195_T	0.999	0.99
165_F	169_L	0.996	0.99
18_L	22_L	0.995	0.99
187_T	190_R	0.986	0.99
225_S	228_W	0.979	0.99
249_L	252_V	0.978	0.99
89_E	93_T	0.977	0.99
45_G	214_L	0.974	0.99
258_L	262_I	0.971	0.99
358_P	390_D	0.970	0.99
183_E	186_V	0.963	0.99
312_N	401_N	0.959	0.99
25_Y	29_H	0.956	0.99
232_K	329_Q	0.954	0.99
137_H	141_G	0.954	0.99
178_P	183_E	0.947	0.99
73_D	76_Q	0.946	0.99
142_T	148_P	0.945	0.99
102_L	106_F	0.942	0.99
139_I	143_I	0.942	0.99
99_G	321_S	0.939	0.99
266_I	290_K	0.935	0.99
265_R	268_K	0.934	0.99
137_H	145_S	0.932	0.99
292_E	302_S	0.931	0.99
172_L	176_S	0.930	0.99
247_V	250_G	0.928	0.99
22_L	216_A	0.927	0.99
154_S	166_F	0.925	0.99
144_L	148_P	0.923	0.99
79_R	83_K	0.921	0.99
19_G	27_H	0.917	0.99
316_S	361_S	0.916	0.99
93_T	97_I	0.915	0.99
275_Y	391_M	0.914	0.99
15_A	27_H	0.910	0.99
325_I	340_E	0.910	0.99
319_Y	389_L	0.908	0.99
290_K	293_A	0.907	0.99
182_R	191_S	0.906	0.99
270_E	283_V	0.905	0.99
283_V	286_R	0.902	0.99
17_V	21_L	0.901	0.99
337_I	340_E	0.899	0.99
26_L	29_H	0.898	0.99
75_K	78_G	0.898	0.99
234_V	388_I	0.897	0.99
239_F	243_F	0.889	0.99
50_H	53_K	0.889	0.99
248_V	252_V	0.887	0.99
234_V	389_L	0.885	0.99
100_I	104_N	0.883	0.99
251_I	254_R	0.881	0.99
95_A	244_F	0.881	0.99
169_L	202_M	0.879	0.99
350_T	368_T	0.877	0.99
239_F	242_L	0.876	0.99
313_L	401_N	0.876	0.99
238_H	242_L	0.874	0.99
237_V	389_L	0.873	0.99
320_Q	365_L	0.872	0.99
270_E	287_I	0.871	0.99
247_V	251_I	0.871	0.99
170_F	199_V	0.870	0.99
198_K	202_M	0.870	0.99
98_L	243_F	0.870	0.99
151_I	154_S	0.869	0.98
55_I	199_V	0.868	0.98
135_S	138_G	0.867	0.98
266_I	270_E	0.867	0.98
141_G	144_L	0.864	0.98
309_Y	401_N	0.857	0.98
182_R	195_T	0.857	0.98
250_G	264_I	0.856	0.98
280_S	397_N	0.852	0.98
65_V	174_L	0.851	0.98
41_L	213_A	0.851	0.98
216_A	220_A	0.843	0.98
167_S	171_G	0.843	0.98
66_V	190_R	0.841	0.98
291_M	301_T	0.838	0.98
147_V	150_N	0.837	0.98
113_D	117_L	0.837	0.98
7_S	11_Q	0.836	0.98
409_A	416_D	0.835	0.98
263_L	402_A	0.834	0.98
65_V	170_F	0.830	0.98
228_W	231_A	0.830	0.98
237_V	322_I	0.827	0.98
166_F	170_F	0.818	0.98
289_E	292_E	0.818	0.98
273_L	283_V	0.817	0.98
212_F	216_A	0.816	0.98
273_L	286_R	0.811	0.98
201_H	205_R	0.811	0.98
178_P	186_V	0.811	0.98
62_S	189_F	0.809	0.98
268_K	272_I	0.808	0.98
150_N	166_F	0.804	0.98
151_I	158_G	0.803	0.97
65_V	167_S	0.802	0.97
182_R	186_V	0.801	0.97
242_L	246_L	0.800	0.97
29_H	40_L	0.800	0.97
174_L	189_F	0.800	0.97
140_M	144_L	0.791	0.97
22_L	41_L	0.786	0.97
323_A	382_I	0.784	0.97
366_L	379_L	0.781	0.97
26_L	41_L	0.780	0.97
233_L	322_I	0.780	0.97
362_F	379_L	0.779	0.97
46_D	144_L	0.778	0.97
324_A	368_T	0.776	0.97
193_S	197_F	0.773	0.97
76_Q	79_R	0.770	0.97
233_L	389_L	0.768	0.97
51_L	147_V	0.767	0.97
102_L	105_V	0.767	0.97
41_L	216_A	0.765	0.97
45_G	210_G	0.765	0.97
273_L	277_T	0.763	0.97
50_H	145_S	0.761	0.97
80_I	408_I	0.761	0.97
234_V	238_H	0.761	0.97
99_G	322_I	0.758	0.96
320_Q	362_F	0.756	0.96
300_I	304_V	0.755	0.96
40_L	43_P	0.755	0.96
331_Y	377_E	0.752	0.96
270_E	286_R	0.749	0.96
410_K	415_F	0.748	0.96
111_G	114_M	0.745	0.96
249_L	253_A	0.744	0.96
311_F	352_K	0.744	0.96
48_F	207_A	0.744	0.96
38_V	220_A	0.740	0.96
233_L	319_Y	0.738	0.96
117_L	120_V	0.733	0.96
8_L	11_Q	0.732	0.96
278_A	390_D	0.731	0.96
287_I	401_N	0.731	0.96
207_A	210_G	0.729	0.96
63_T	193_S	0.729	0.96
102_L	239_F	0.729	0.96
366_L	370_G	0.728	0.96
145_S	148_P	0.724	0.95
196_M	203_V	0.723	0.95
274_A	398_V	0.721	0.95
262_I	266_I	0.718	0.95
114_M	117_L	0.718	0.95
48_F	206_Y	0.716	0.95
233_L	382_I	0.715	0.95
335_L	339_Q	0.714	0.95
362_F	389_L	0.713	0.95
138_G	142_T	0.713	0.95
28_Y	220_A	0.712	0.95
263_L	406_L	0.711	0.95
28_Y	39_N	0.705	0.95
107_Q	329_Q	0.704	0.95
188_V	192_I	0.704	0.95
179_A	184_P	0.704	0.95
250_G	254_R	0.701	0.95
111_G	232_K	0.698	0.94
150_N	154_S	0.697	0.94
237_V	241_I	0.697	0.94
39_N	220_A	0.696	0.94
170_F	185_L	0.696	0.94
324_A	328_A	0.694	0.94
316_S	354_I	0.692	0.94
211_V	358_P	0.692	0.94
69_A	175_S	0.692	0.94
71_V	80_I	0.692	0.94
144_L	147_V	0.691	0.94
307_T	311_F	0.690	0.94
86_I	89_E	0.688	0.94
155_M	166_F	0.686	0.94
338_W	341_I	0.684	0.94
12_I	207_A	0.680	0.94
347_L	364_V	0.680	0.94
142_T	145_S	0.674	0.93
340_E	344_V	0.673	0.93
316_S	320_Q	0.671	0.93
257_G	260_V	0.670	0.93
84_T	408_I	0.670	0.93
244_F	314_D	0.669	0.93
26_L	216_A	0.667	0.93
236_L	239_F	0.666	0.93
19_G	216_A	0.664	0.93
298_V	302_S	0.663	0.93
113_D	119_T	0.660	0.93
74_A	172_L	0.660	0.93
131_A	134_S	0.657	0.92
240_A	322_I	0.656	0.92
99_G	318_L	0.656	0.92
104_N	337_I	0.655	0.92
165_F	206_Y	0.655	0.92
98_L	248_V	0.653	0.92
93_T	348_M	0.653	0.92
309_Y	313_L	0.647	0.92
200_T	275_Y	0.646	0.92
207_A	277_T	0.646	0.92
258_L	266_I	0.645	0.92
40_L	44_A	0.645	0.92
79_R	82_A	0.644	0.92
108_P	111_G	0.643	0.92
354_I	364_V	0.643	0.92
65_V	192_I	0.641	0.91
74_A	81_G	0.641	0.91
342_I	372_V	0.641	0.91
76_Q	81_G	0.640	0.91
209_V	213_A	0.639	0.91
191_S	194_E	0.638	0.91
177_L	194_E	0.637	0.91
194_E	198_K	0.636	0.91
22_L	27_H	0.636	0.91
254_R	260_V	0.636	0.91
155_M	162_P	0.635	0.91
98_L	240_A	0.634	0.91
414_K	417_R	0.634	0.91
233_L	241_I	0.633	0.91
11_Q	209_V	0.632	0.91
27_H	38_V	0.631	0.91
73_D	81_G	0.631	0.91
174_L	186_V	0.631	0.91
12_I	15_A	0.630	0.91
91_I	95_A	0.630	0.91
88_F	244_F	0.627	0.91
88_F	401_N	0.627	0.91
352_K	401_N	0.626	0.91
190_R	193_S	0.626	0.91
253_A	256_C	0.625	0.90
51_L	169_L	0.625	0.90
89_E	352_K	0.624	0.90
88_F	404_A	0.624	0.90
115_S	119_T	0.623	0.90
346_T	371_S	0.622	0.90
181_H	187_T	0.622	0.90
344_V	347_L	0.619	0.90
246_L	251_I	0.618	0.90
320_Q	354_I	0.618	0.90
338_W	342_I	0.615	0.90
76_Q	414_K	0.614	0.90
294_Y	406_L	0.612	0.90
320_Q	324_A	0.611	0.89
313_L	354_I	0.611	0.89
230_L	233_L	0.609	0.89
356_G	359_G	0.608	0.89
263_L	294_Y	0.607	0.89
331_Y	375_P	0.606	0.89
305_V	405_V	0.604	0.89
47_I	165_F	0.603	0.89
100_I	344_V	0.601	0.89
258_L	416_D	0.600	0.89
149_T	157_K	0.600	0.89
44_A	209_V	0.600	0.89
233_L	323_A	0.599	0.89
405_V	409_A	0.597	0.88
164_I	331_Y	0.597	0.88
198_K	205_R	0.596	0.88
328_A	333_I	0.595	0.88
59_I	164_I	0.593	0.88
14_F	18_L	0.593	0.88
288_I	305_V	0.593	0.88
191_S	195_T	0.592	0.88
314_D	400_G	0.587	0.87
210_G	214_L	0.586	0.87
377_E	380_A	0.582	0.87
297_P	301_T	0.581	0.87
66_V	186_V	0.580	0.87
185_L	192_I	0.579	0.87
323_A	386_D	0.579	0.87
267_L	287_I	0.576	0.87
378_G	381_F	0.576	0.87
356_G	360_V	0.575	0.86
143_I	147_V	0.575	0.86
183_E	188_V	0.573	0.86
265_R	269_D	0.572	0.86
281_E	309_Y	0.571	0.86
321_S	347_L	0.570	0.86
413_H	417_R	0.570	0.86
245_A	250_G	0.570	0.86
54_M	199_V	0.569	0.86
342_I	346_T	0.569	0.86
51_L	206_Y	0.569	0.86
186_V	190_R	0.567	0.86
131_A	135_S	0.565	0.85
94_V	248_V	0.565	0.85
334_D	337_I	0.565	0.85
66_V	70_G	0.563	0.85
344_V	348_M	0.563	0.85
359_G	363_V	0.562	0.85
327_I	364_V	0.562	0.85
94_V	97_I	0.562	0.85
373_G	377_E	0.559	0.85
133_Q	136_S	0.559	0.85
397_N	401_N	0.559	0.85
245_A	264_I	0.558	0.85
224_F	228_W	0.558	0.85
27_H	39_N	0.557	0.85
283_V	309_Y	0.555	0.84
177_L	198_K	0.554	0.84
286_R	289_E	0.553	0.84
274_A	390_D	0.553	0.84
16_M	211_V	0.553	0.84
115_S	118_A	0.553	0.84
102_L	235_L	0.552	0.84
361_S	368_T	0.551	0.84
19_G	212_F	0.551	0.84
148_P	152_V	0.551	0.84
335_L	343_L	0.550	0.84
283_V	398_V	0.550	0.84
80_I	412_E	0.549	0.84
230_L	241_I	0.548	0.84
133_Q	137_H	0.546	0.83
205_R	209_V	0.546	0.83
57_V	155_M	0.545	0.83
407_V	411_W	0.543	0.83
300_I	414_K	0.543	0.83
263_L	399_V	0.542	0.83
173_G	177_L	0.542	0.83
253_A	407_V	0.541	0.83
82_A	85_I	0.541	0.83
278_A	282_S	0.540	0.83
274_A	395_A	0.539	0.83
56_V	360_V	0.539	0.83
8_L	14_F	0.538	0.83
19_G	215_I	0.538	0.83
92_T	317_T	0.538	0.83
91_I	311_F	0.538	0.83
59_I	196_M	0.536	0.82
250_G	253_A	0.535	0.82
23_G	27_H	0.535	0.82
94_V	98_L	0.535	0.82
343_L	347_L	0.535	0.82
88_F	308_G	0.533	0.82
296_A	405_V	0.533	0.82
56_V	381_F	0.530	0.82
319_Y	323_A	0.529	0.82
13_L	16_M	0.529	0.82
106_F	232_K	0.528	0.81
354_I	361_S	0.528	0.81
24_S	224_F	0.528	0.81
330_L	381_F	0.527	0.81
235_L	238_H	0.526	0.81
148_P	154_S	0.525	0.81
232_K	236_L	0.525	0.81
39_N	221_N	0.525	0.81
375_P	378_G	0.524	0.81
71_V	405_V	0.524	0.81
387_R	391_M	0.524	0.81
96_I	348_M	0.523	0.81
156_A	159_E	0.522	0.81
134_S	138_G	0.522	0.81
22_L	25_Y	0.522	0.81
295_G	416_D	0.521	0.81
84_T	300_I	0.521	0.81
291_M	401_N	0.520	0.80
339_Q	342_I	0.520	0.80
230_L	234_V	0.519	0.80
316_S	390_D	0.519	0.80
154_S	157_K	0.519	0.80
327_I	331_Y	0.519	0.80
406_L	415_F	0.518	0.80
51_L	203_V	0.518	0.80
249_L	400_G	0.517	0.80
174_L	191_S	0.517	0.80
16_M	27_H	0.516	0.80
351_S	363_V	0.514	0.80
52_I	273_L	0.513	0.80
347_L	355_A	0.513	0.80
385_V	389_L	0.513	0.80
249_L	264_I	0.508	0.79
316_S	393_R	0.508	0.79
324_A	327_I	0.507	0.79
308_G	405_V	0.507	0.79
23_G	26_L	0.506	0.79
162_P	359_G	0.503	0.78
204_M	207_A	0.503	0.78
26_L	40_L	0.502	0.78
315_G	396_L	0.501	0.78
46_D	217_V	0.501	0.78
20_I	23_G	0.501	0.78
267_L	271_L	0.500	0.78

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2nwlA	3	0.8924	100	0.104	Contact Map
3zuxA	1	0.6522	70.2	0.957	Contact Map
3nd0A	2	0.8398	29.8	0.967	Contact Map
4cz8A	2	0.6224	25.1	0.968	Contact Map
4czbA	2	0.611	21.4	0.969	Contact Map
4ryoA	1	0.3432	18.1	0.97	Contact Map
4n7wA	2	0.3638	14.4	0.971	Contact Map
4bgnA	3	0.4485	10	0.973	Contact Map
3klyA	3	0.524	7.2	0.975	Contact Map
4eneA	2	0.8467	6.5	0.976	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0121 seconds.